New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5333243 =	21 (1.240)	6 (0.400)	6/248	1.1	24.6%	intergenic (+27/‑216)	gluQ/PP_5704	glutamyl‑Q tRNA(Asp) synthetase/hypothetical protein
	?	NC_002947	5333303 =	18 (1.190)					intergenic (+87/‑156)	gluQ/PP_5704	glutamyl‑Q tRNA(Asp) synthetase/hypothetical protein

AATGGCGGCCGGAAGCGATCGCGCAGCGGACCACGGTGCCAGAGGCTGATTTGCGCTGAACCTTTACCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAACCACGCCGCCTTCAAGGCCTGTGGGCTACCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGCACAGGTACCCCCCCTAAAAACAAAAGCCCAGTAAATTCAAACCCTTGGCGAACGCTGTGGATTCCCGCTAGCATCCCCCCTGCCATTTGCGCCAATAATAAGTTCAAGCC  >  NC_002947/5333158‑5333432                                                                                                                                                  |                                                                                                                                  aaTGGCGGCCGGAAGCGATCGCGCAGCGGACCACGGTGCCAGAGGCTGATTTGCGCTGAACCTTTACCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAACCACGCCGCCTTCAAGGCCTGTGGGCTACCTGTGGGAGCGGGCATGcc                                                                                                                               <  1:62627/150‑1 (MQ=255)                cGATCGCGCAGCGGACCACGGTGCCAGAGGCTGATTTGCGCTGAACCTTTACCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAACCACGCCGCCTTCAAGGCCTGTGGGCTACCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGc                                                                                                                <  1:116179/150‑1 (MQ=255)                   caagggtttgaatttactgggcttttgtttttagggggggtacctgtgccggcctcttcgcgggcgcGCCCGCTCCCACAGGAACCACGCCGCCTTCAAGGCCTGTGGGCTACCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGcaca                                                                                                             >  1:187452‑M1/68‑150 (MQ=255)                    cgcgCAGCGGACCACGGTGCCAGAGGCTGATTTGCGCTGAACCTTTACCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAACCACGCCGCCTTCAAGGCCTGTGGGCTACCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGCACAg                                                                                                            <  1:41435/150‑1 (MQ=255)                         aGCGGACCACGGTGCCAGAGGCTGATTTGCGCTGAACCTTTACCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAACCACGCCGCCTTCAAGGCCTGTGGGCTACCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGCACAGGGAcc                                                                                                       >  2:300010/1‑150 (MQ=255)                                cACGGTGCCAGAGGCTGATTTGCGCTGAACCTTTACCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAACCACGCCGCCTTCAAGGCCTGTGGGCTACCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGCACAg                                                                                                            >  1:268291/1‑138 (MQ=255)                                cACGGTGCCAGAGGCTGATTTGCGCTGAACCTTTACCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAACCACGCCGCCCTCAAGGCCTGTGGGCTACCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGCACAg                                                                                                            <  2:268291/138‑1 (MQ=255)                                                              cTTTACGGGCCTCTTCGCGGGCGCGCCCGCTACCCCAGGAACAACCACGCATTCAAGGCCTCTGGGCTACCGGTGATATCGGGCTTGCCCCCGAAATGGCCGGCCCAGGTACCCCCCCTAAAAACAAAAACCCAGTAAATTCAACCCCtc                                                                  >  2:254642/1‑149 (MQ=255)                                                               tgtgccggccctttcgcgggcatgcccgctcccacaggtagcccacaggccttgaaggcggcgtggttcctgtgggagcgggcGCGCCCGCGAAGAGGCCGGCACAGGTACCCCCCCTAAAAACAAAAGCCCAGTAAATTCAAACCCTTg                                                                 >  1:187452‑M2/84‑150 (MQ=255)                                                                      gCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAACCACGCCGCCTTCAAGGCCTGTGGGCTACCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGCACAGGTACCCCCCCTAAAAACAAAAGCCCAGTAAGTTCAAACCCTTGGCGAACg                                                          >  2:273436/1‑150 (MQ=255)                                                                       ccTCTTCGCGGGCGCGCCCGCTCCCACAGGAACCACGCCGCCTTCAAGGCCTGTGGGCTACCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGCACAGGTACCCCCCCTAAAAACAAAAGCCCAGTAAATTCa                                                                         <  1:210806/134‑1 (MQ=255)                                                                       ccTCTTCGCGGGCGCGCCCGCTCCCACAGGAACCACGCCGCCTTCAAGGCCTGTGGGCTACCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGCACAGGTACCCCCCCTAAAAACAAAAGCCCAGTAAATTCa                                                                         >  2:210806/1‑134 (MQ=255)                                                                          ctTCGCGGGCGCGCCCGCTCCCACAGGAACCACGCCGCCTTCAAGGCCTGGGGGCTACATGCGGAAGAGCTTATGCCTGAGAAAGGGCCGGCCCCGGTACCCACGCTAACCACAAAAGCCCAGTAAATTCAAACCCTTGGCGAACGCtgt                                                      <  1:300010/150‑1 (MQ=255)                                                                           ttCGCGGGCGCGCCCGCTCCCACAGGAACCACGCCGCCTTCAAGGCCTGTGGGCTACCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGCACAGGTACCCCCCCTAAAAACAAAAGCCCAGTAAATTCAAACCCTTGGCGAACGCtgtg                                                     >  1:108114/1‑150 (MQ=255)                                                                           ttCGCGGGCGCGCCCGCTCCCACAGGAACCACGCCGCCTTCAAGGCCTGTGGGCTACCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGCACAGGTACCCCCCCTAAAAACAAAAGCCCAGTAAATTCAAACCCTTGGCGAACGCtgtg                                                     <  2:108114/150‑1 (MQ=255)                                                                           ttCGCGGGCGCGCCCGCTCCCACAAGAACCCCGCCGCCTTCAAGGCCTGTGGGCTACCTGTGGGAGCGGGACTCCCCGCGAAAACGCCGGCACAGGTACCCCCCATAAAAACAAAAGCACAGTAAAGAAAAACCCTTGGCGAACACtgtg                                                     >  2:179980/1‑150 (MQ=255)                                                                                      GCCCGAGCCCACAGGAACCACGCAGCCTTAAAGGCCTGTGGGCCACCTCTGCGAGCTGGCATGCCCGCGAAAGGGCCGGCACAGGTACCCCCCCTAAAAACAAAAGCCCAGTAAATTCAAACCCTTGGCGAACGCTGTGGATTCCCGCTa                                          >  2:149270‑M1/1‑150 (MQ=255)                                                                                       cccgctcccacaggtagcccacaggccttgaaggcggcgtggttcctgtgggagcgggcATGCCCGCGAAAGGGCCGGCACAGGTACCCCCCCTAAAAACaaa                                                                                        >  1:163350‑M2/60‑103 (MQ=255)                                                                                       cccgctcccacaggtagcccacaggccttgaaggcggcgtggttcctgtgggagcgggcATGCCCGCGAAAGGGCCGGCACAGGTACCCCCCCTAAAAACaaa                                                                                        <  2:163350‑M2/44‑1 (MQ=255)                                                                                        CCGCTCCCACAGGAACCACGCCGCCTTCAAGGCCTGTGGGCTACCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGCACAGGTACCCCCCCTAAAAACAAAAGCCCAGTAAATTCAAACCCTTGGCGAACGCTGTGGATTCCCGCTAGc                                        <  1:228395‑M1/150‑1 (MQ=255)                                                                                               cacaggtagcccacaggccttgaaggcggcgtggttcctgtgggagcgggcATGCCCGCGAAAGGGCCGGCACAGGTACCCCCCCTAAAAACAAAAGCCCAGTAAATTCAAACCCTTGGCGAACGCTGTGGATTCCCGCTAGCATccccc                                 >  2:208826‑M2/52‑150 (MQ=255)                                                                                                 CAGGAACCACGCCGCCTCCAAGGCCTGTGGGCTACCTGTGGGCGCGGGTATGCACGCGAAAGGGCCCGCACAGGTACCCCCCCTAAAAACAAAAGCCCAGTAAATTCAACCCCTTGGCGAACGCTGTGGATTCCCGCTAGCATCCCCCCt                               >  2:15120‑M1/1‑150 (MQ=255)                                                                                                  aggtagcccacaggccttgaaggcggcgtggttcctgtgggagcgggcATGCCCGCGAAAGGGCCGGCACAGGTACCCCCCCTAAAAACAAAAGCCCAGTAAATTCAAACCCTTGGCGAACGCTGTGGATTCCCGCTAGCATCCCCCCTg                              >  1:338050‑M2/49‑150 (MQ=255)                                                                                                  AGGAACCACGCCGCCTTCAAGGCCTGTGGGCTACCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGCACAGGTACCCCCCCTAAAAACAAAAGCCCAGTAAATTCAAACCCTTGGCGAACGCTGTGGATTCCCGCTAGCATCCCCCCTg                              <  1:331952‑M1/150‑1 (MQ=255)                                                                                                         aCGCCGCCTTCAAGGCCTGTGGGCTACCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGCACAGGTACCCCCCCTAAAAACAAAAGCCCAGTAAATTCAAACCCTTGGCGAACGCTGTGGATTCCCGCTAGCATCCCCCCTGCCATTTg                       <  1:273436/150‑1 (MQ=255)                                                                                                                    aaGGCCTGTGGGCTACCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGCACAGGTACCCCCCCTAAAAACAAAAGCCCAGTAAATTCAAACCCTTGGCGAACGCTGTGGATTCCCGCTAGCATCCCCCCTGCCATTTGCGCCAataata            >  1:228600/1‑150 (MQ=255)                                                                                                                         cggcgtggttcctgtgggagcgggcGCGCCCGCGAAGAGGCCGGCACAGGTACCCCCCCTAAAAACAAAAGCCCAGTAAATTCAAACCCTTGGCGAACGCTGTGGATTCCCGCTAGCATCCCCCCTGCCATTTGCGCCAATAATAAGTTc       <  2:187452‑M2/125‑1 (MQ=255)                                                                                                                          tgtgGGCTACCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGCACAGGTACCCCCCCTAAAAACAAAAGCCCAGTAAATTCAAACCCTTGGCGAACGCTGTGGATTCCCGCTAGCATCCCCCCTGCCATTTGCTCCAATAATAAGTTCa      >  1:262775/1‑150 (MQ=255)                                                                                                                              ggCTACCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGCACAGGTACCCCCCCTAAAAACAAAAGCCCAGTAAATTCAAACCCTTGGCGAACGCTGTGGATTCCCGCTAGCATCCCCCCTGCCATTTGCGCCAATAATAAGTTCAAGcc  <  2:228395/150‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                  AATGGCGGCCGGAAGCGATCGCGCAGCGGACCACGGTGCCAGAGGCTGATTTGCGCTGAACCTTTACCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAACCACGCCGCCTTCAAGGCCTGTGGGCTACCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGCACAGGTACCCCCCCTAAAAACAAAAGCCCAGTAAATTCAAACCCTTGGCGAACGCTGTGGATTCCCGCTAGCATCCCCCCTGCCATTTGCGCCAATAATAAGTTCAAGCC  >  NC_002947/5333158‑5333432

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.