| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1976257 = | 82 (1.370) | 7 (0.130) | 7/212 | NT | 8.9% | intergenic (+42/‑123) | pheA/PP_1770 | bifunctional chorismate mutase/prephenate dehydratase/3‑phosphoshikimate 1‑carboxyvinyltransferase |
| ? | NC_002947 | 1976305 = | 70 (1.320) | intergenic (+90/‑75) | pheA/PP_1770 | bifunctional chorismate mutase/prephenate dehydratase/3‑phosphoshikimate 1‑carboxyvinyltransferase | |||||
GATGATGGGCGCGGGTTTGGTTTTTGCTGCATTTACCACTGGTGCGAACCCTGTTCAGAAATCTAGGTAGCCTGTGAGGGCCATTGGGGCCGCGGCGCGGCCCTTCGCGGGCTAGCCCGCTCCCACAGAGATCGGCATCACATGCTCACTGTGGGAGCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1976418‑1976257‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgtgggagcgggcTAGCCCGCGAAGGGCCGCGCCGCGGCCCCAATGGCCCTCACAGGCTACCTAGATTTCTGAACAGGGTTCGCACCAGTGGTAAATGCAGCAAAAACCAAACCCGCGCCCATCATCGACCGCCTGGTCGTGGTCGGTCTAGGCCT > NC_002947/1976305‑1976447 GATGATGGGCGCGGGTTTGGTTTTTGCTGCATTTACCACTGGTGCGAACCCTGTTCAGAAATCTAGGTAGCCTGTGAGGGCCATTGGGGCCGCGGCGCGGCCCTTCGCGGGCTAGCCCGCTCCCACAGAGATCGGCATCACATGCTCACT > 2:923212/1‑150GATGATGGGCGCGGGTTTGGTTTTTGCTGCATTTACCACTGGTGCGAACCCTGTTCAGAAATCTAGGTAGCCTGTGAGGGCCATTGGGGCCGCGGCGCGGCCCTTCGCGGGCTAGCCCGCTCCCACAGAGATCGGCATCACATGCTCACT > 1:1300735/1‑150 TGATGGGCGCGGGTTTGGTTTTTGCTGCATTTACCACTGGTGCGAACCCTGTTCAGAAATCTAGGTAGCCTGTGAGGGCCATTGGGGCCGCGGCGCGGCCCTTCGCGGGCTAGCCCGCTCCCACAGAGATCGGCATCACATGCTCACTGT < 1:220130/150‑1 TGATGGGCGCGGGTTTGGTTTTTGCTGCATTTACCACTGGTGCGAACCCTGTTCAGAAATCTAGGTAGCCTGTGAGGGCCATTGGGGCCGCGGCGCGGCCCTTCGCGGGCTAACCCGCTCCCACAGAGATCGGCATCACATGCTCACTGT > 2:265249/1‑150 ATGGGCGCGTGTTTGGTTTTTGCTGCATTTACCACTGGTGCGAACCCTGTTCAGCAATCTAGGTAGCCTGTGAGGGCCATTGGGGCCGCGGCGCGGCCCTTCGCGGGCTAGCCCGCTCACACAGAGATCGGTATCACATGCTCACTGTGG < 2:147110/150‑1 ATGGGCGCGGGTTTGGTTTTTGCTGCATTTACCACTGGTGCGAACCCTGTTCAGAAATCTAGGTAGCCTGTGAGGGCCATTGGGGCCGCGGCGCGGCCCTTCGCGGGCTAGCCCGCTCCCACAGAGATCGGCATCACCTGCTCACTGTGG < 2:1594325/150‑1 ATGGGCGCGGGTTTGGTTTTTGCTGCATTTACCACTGGTGCGAACCCTGTTCAGAAATCTAGGTAGCCTGTGAGGGCCATTGGGGCCGCGGCGCGGCCCTTCGCGGGCTAGCCCGCTCCCACAGAGATCGGCATCACATGCTCACTGTGG < 2:1128802/150‑1 ATGGGCGCGGGTTTGGTTTTTGCTGCATTTACCACTGGTGCGAACCCTGTTCAGAAATCTAGGTAGCCTGTGAGGGCCATTGGGGCCGCGGCGCGGCCCTTCGCGGGCTAGCCCGCTCCCACAGAGATCGGCATCACATGCTCACTGTGG < 1:795798/150‑1 CGGGTTTGGTTTTTGCTGCATTTACCACTGGTGCGAACCCTGTTCAGAAATCTAGGTAGCCTGTGAGGGCCATTGGGGCCGCGGCGCGGCCCTTCGCGGGCTAGCCCGCTCCCACAGAGATCGGCATCACATGCTCACTGTGGGAGCGGG > 1:776403/1‑150 GGGTTTGGTTTTTGCTGCATTTACCACTGGTGCGAACCCTGTTCAGAAATCTAGGTAGCCTGTGAGGGCCATTGGGGCCGCGGCGCGGCCCTTCGCGGGCTAGCCCGCTCCCACAGAGATCGGCATCACATGCTCACTGTGGGAGCGGGC < 1:886792/150‑1 TGGTGCGAACCCTGTTCAGAAATCTAGGTAGCCTGTGAGGGCCATTGGGGCCGCGGCGCGGCCCTTCGCGGGCTAGCCCGCTCCCACAGAGATCGGCATCACATGCTCACTGTGG < 1:452351/115‑1 TGGTGCGAACCCTGTTCAGAAATCTAGGTAGCCTGTGAGGGCCATTGGGGCCGCGGCGCGGCCCTTCGCGGGCTAGCCCGCTCCCACAGAGATCGGCATCACATGCTCACTGTGG > 2:452351/1‑115 GTGCGAACCCTGTTCAGAAATCTAGGTAGCCTGTGAGGGCCATTGGGGCCGCGGCGCGGCCCTTCGCGGGCTAGCCCGCTCCCACAGAGATCGGCATCACATGCTCACTGTGGGAGCGG < 2:1480188/119‑1 GTGCGAACCCTGTTCAGAAATCTAGGTAGCCTGTGAGGGCCATTGGGGCCGCGGCGCGGCCCTTCGCGGGCTAGCCCGCTCCCACAGAGATCGGCATCACATGCTCACTGTGGGAGCGG > 1:1480188/1‑119 ATCTAGGTAGCCTGTGAGGGCCATTGGGGCCGCGGCGCGGCCCTTCGCGGGCTAGCCCGCTCCCACAGAGATCGGCATCACATGCTCACTGT < 1:1527346/92‑1 ATCTAGGTAGCCTGTGAGGGCCATTGGGGCCGCGGCGCGGCCCTTCGCGGGCTAGCCCGCTCCCACAGAGATCGGCATCACATGCTCACTGT > 2:1527346/1‑92 TGTGAGGGCCATTGGGGCCGCGGCGCGGCCCTTCGCGGGCTAGCCCGCTCCCACAGAGATCGGCATCACATGCTCACTGTGGGAGCGGGC > 2:1194908/1‑90 TGTGAGGGCCATTGGGGCCGCGGCGCGGCCCTTCGCGGGCTAGCCCGCTCCCACAGAGATCGGCATCACATGCTCACTGTGGGAGCGGGC < 1:1194908/90‑1 CCTTCGCGGGCTAGCCCGCTCCCACAGAGATCGGCATCACATGCTCACTGTGGGAGCGGGCATGCCCGCGAAGGGCCGCGCCGCGGCCCCAATGGCCCTCACAGGCTACCTAGATTTCTGAACAG > 2:923268/1‑125 CCTTCGCGGGCTAGCCCGCTCCCACAGAGATCGGCATCACATGCTCACTGTGGGAGCGGGCATGCCCGCGAAGGGCCGCGCCGCGGCCCCAATGGCCCTCACAGGCTACCTAGATTTCTGAACAG < 1:923268/125‑1 TTCGCGGGCTAGCCCGCTCCCACAGAGATCGGCATCACATGCTCACTGTGGGAGCGGGCATGCCCGCGAAGGGCTGCGCCGCGGCCCCAATGGCCCTCACAGGCTACCTAGATTTCTGAACAGGGTTCGCACCAGTGGTAAATGCAGCAA > 2:75121/1‑150 GCGGGCTAGCCCGCTCCCACAGAGATCGGCATCACATGCTCACTGTGGGAGCGGGCATGCCCGCGAAGGGCTGCGCCGCGGCCCCAATGGCCCTCACAGGCTACCTAGATTTCTGAACAGGGTTCGCACCAGTGGTAAATGCAGCAAAAA < 1:75121/150‑1 TAGCCCGCTCCCACAGAGATCGGCATCACATGCTCACTGTGGGAGCGGGCTAGCCCGCGAAGGGCCGCGCCGCGGCCCCAATGGCCCTCACAGGCTACCTA < 2:627666/101‑1 TAGCCCGCTCCCACAGAGATCGGCATCACATGCTCACTGTGGGAGCGGGCTAGCCCGCGAAGGGCCGCGCCGCGGCCCCAATGGCCCTCACAGGCTACCTA > 1:627666/1‑101 CGCTCCCACAGAGATCGGCATCACATGCTCACTGTGGGAGCGGGCTAGCCCGCGAAGGGCCGCGCCGCGGCCCCAATGGCCCTCACAGGCTACCTAGATTTCTGAACAGGGTTCGCACCAGTGGTAAATGCAGCAAAAACCAAACCCGCG > 1:1470377/1‑150 CTGTGGGAGCGGGCTAGCCCGCGAAGGGCCGCGCCGCGGCCCCAATGGCCCTCACAGGCTACCTAGATTTCTGAACAGGGTTCGCACCAGTGGTAAATGCAGCAAAAACCAAACCCGCGCCCATCATCGACCGCCTGGTCGTGGTCGGTC < 2:1259911/150‑1 cccttcGCGGGCTAGCCCGCGAAGGGCCGCGCCGCGGCCCCAATGGCCCTCACAGGCTACCTAGATTTCTGAACAGGGTTCGCACCAGTGGTAAATGCAGCAAAAACCAAACCCGCGCCCATCATCGACCGCCTGGTCGTGGTCGGTCTA > 1:389236/7‑150 GTGGGAGCGGGCTAGCCCGCGAAGGGCCGCGCCGCGGCCCCAATGGCCCTCACAGGCTACCTAGATTTCTGAACAGGGTTCGCACCAGTGGTAAATGCAGCAAAAACCAAACCCGCGCCCATCATCGACCGCCTGGTCGTGGTCGGTCTA < 1:1128802/150‑1 ccttcGCGGGCTAGCCCGCGAAGGGCCGCGCCGCGGCCCCAATGGCCCTCACAGGCTACCTAGATTTCTGAACAGGGTTCGCACCAGTGGTAAATGCAGCAAAAACCAAACCCGCGCCCATCATCGACCGCCTGGTCGTGGTCGGTCTAG > 2:1184051/6‑150 TGGGAGCGGGCTAGCCCGCGAAGGGCCGCGCCGCGGCCCCAATGGCCCTCACAGGCTACCTAGATTTCTGAACA < 1:40306/74‑1 TGGGAGCGGGCTAGCCCGCGAAGGGCCGCGCCGCGGCCCCAATGGCCCTCACAGGCTACCTAGATTTCTGAACA > 2:40306/1‑74 GGAGCGGGCTAGCCCGCGAAGGGCCGCGCCGCGGCCCCAATGGCCCTCACAGGCTACCTAGATTTCTGAACAGGGTTCGCACCAGAGGTAAATGCAGCAAAAACCAAACCCGCGCCCATCATCGACCGCCTGGTCGTGGTCGGTCTAGGC > 2:463622/1‑150 AGCGGGCTAGCCCGCGAAGGGCCGCGCCGCGGCCCCAATGGCCCTCACAGGCTACCTAGATTTCTGAACAGGGTTCGCACCAGTGGTAAATGCAGCAAAAACCAAACCCGCGCCCATCATCGACCGCCTGGTCGTGGTCGGTCTAGGCCT < 2:795798/150‑1 GCTAGCCCGCGAAGGGCCGCGCCGCGGCCCCAATGGCCCTCACAGGCTACCTAGATTTCTGAACAGGGTTCGCACCAGTGGTAAATGCAGCAAAAACCAAAC > 1:349559/1‑102 GCTAGCCCGCGAAGGGCCGCGCCGCGGCCCCAATGGCCCTCACAGGCTACCTAGATTTCTGAACAGGGTTCGCACCAGTGGTAAATGCAGCAAAAACCAAAC < 2:349559/102‑1 CTAGCCCGCGAAGGGCCGCGCCGCGGCCCCAATGGCCCTCACAGGCTACCTAGATTTCTGAACAGGGTTCGCACCAGTGGTAAATGCA > 1:1416235/1‑88 CTAGCCCGCGAAGGGCCGCGCCGCGGCCCCAATGGCCCTCACAGGCTACCTAGATTTCTGAACAGGGTTCGCACCAGTGGTAAATGCA < 2:1416235/88‑1 GATGATGGGCGCGGGTTTGGTTTTTGCTGCATTTACCACTGGTGCGAACCCTGTTCAGAAATCTAGGTAGCCTGTGAGGGCCATTGGGGCCGCGGCGCGGCCCTTCGCGGGCTAGCCCGCTCCCACAGAGATCGGCATCACATGCTCACTGTGGGAGCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1976418‑1976257‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgtgggagcgggcTAGCCCGCGAAGGGCCGCGCCGCGGCCCCAATGGCCCTCACAGGCTACCTAGATTTCTGAACAGGGTTCGCACCAGTGGTAAATGCAGCAAAAACCAAACCCGCGCCCATCATCGACCGCCTGGTCGTGGTCGGTCTAGGCCT > NC_002947/1976305‑1976447 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |