New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5079219 =	51 (0.850)	6 (0.110)	6/228	NT	10.9%	noncoding (58/77 nt)	PP_t56	tRNA‑Arg
	?	NC_002947	5079392 =	50 (0.880)					noncoding (35/77 nt)	PP_t55	tRNA‑Arg

CTCTATCCAGCTGAGCTATGAGTCCGTGATGGTAGTTTTAGACCAGGTTACCACTGGCTTACTGAAATGGCTTTTCAAGCAGAACCACTTCAAGAAAGTGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGCGATTGGCAGTTTTAAACCAGATTACCGCTGGTTGACTGAAATGGCTTTGCAAGCAGAACCACTTCAAGAAAGTGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTC  >  NC_002947/5079252‑5079541                                                                                                                                             |                                                                                                                                                      ctctATCCAGCTGAGCTATGAGTCCGTGATGGTAGTTTTAGACCAGGTTACCACTGGCTTACTGAAATGGCTTTTCAAGCAGAACCACTTCAAGAAAGTGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTa                                                                                                                                              >  1:728266/1‑150 (MQ=255)    tATCCAGCTGAGCTATGAGTCCGTGATGGTAGTTTTAGACCAGGTTACCACTGGCTTACTGAAATGGCTTTTCAAGCAGAACCACTTCAAGAAAGTGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTActc                                                                                                                                           >  1:232468/1‑150 (MQ=255)      tCCAGCTGAGCTATGAGTCCGTGATGGTAGTTTTAGACCAGGTTACCACTGGCTTACTGAAATGGCTTTTCAAGCAGAACCACTTCAAGAAAGTGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTa                                                                                                                                         >  1:1447391/1‑150 (MQ=255)      gccactttcttgaagtggttctgcttgaaaagccatttcagtaagccagtggtaacctggtctaaaactaccatcacggactcatagctcagctggatagagtactcggctacgaacctgcgaccgctcggttcgTAGCCGAGTAct                                                                                                                                            <  1:556287‑M2/12‑1 (MQ=255)      gccactttcttgaagtggttctgcttgaaaagccatttcagtaagccagtggtaacctggtctaaaactaccatcacggactcatagctcagctggatagagtactcggctacgaacctgcgaccgctcggttcgTAGCCGAGTAct                                                                                                                                            >  2:556287‑M2/136‑147 (MQ=255)                cTATGAGTCCGTGATGGTAGTTTTAGACCAGGTTACCACTGGCTTACTGAAATGGCTTTTCAAGCAGAACCACTTCAAGAAAGTGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAg                                                                                                                                                >  1:833174/1‑133 (MQ=255)                cTATGAGTCCGTGATGGTAGTTTTAGACCAGGTTACCACTGGCTTACTGAAATGGCTTTTCAAGCAGAACCACTTCAAGAAAGTGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAg                                                                                                                                                <  2:833174/133‑1 (MQ=255)                   tGAGTCCGTGATGGTAGTTTTAGACCAGGTTACCACTGGCTTACTGAAATGGCTTTTCAAGCAGAACCACTTCAAGAAAGTGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAg                                                                                                                                    <  2:1616344/142‑1 (MQ=255)                   tGAGTCCGTGATGGTAGTTTTAGACCAGGTTACCACTGGCTTACTGAAATGGCTTTTCAAGCAGAACCACTTCAAGAAAGTGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAg                                                                                                                                    >  1:1616344/1‑142 (MQ=255)                    gAGTCCGCGATGGTAGTTTCAAACCAGGTTACCACTGGCTTACTGAAATGGCTTTTCAAGCAGACTCACTGCAAGAGAGTGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTAt                                                                                                                           <  2:1082444/150‑1 (MQ=14)                         cGTGATGGTAGTTTTAGACCAGGTTACCACTGGCTTACTGAAATGGCTTTTCAAGCAGAACCACTTCAAGAAAGTGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCt                                                                                                                                  >  1:1478124/1‑138 (MQ=255)                         cGTGATGGTAGTTTTAGACCAGGTTACCACTGGCTTACTGAAATGGCTTTTCAAGCAGAACCACTTCAAGAAAGTGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCt                                                                                                                                  <  2:1478124/138‑1 (MQ=255)                                gTAGTTTTAGACCAGGTTACCACTGGCTTACTGAAATGGCTTTTCAAGCAGAACCACTTCAAGAAAGTGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGCGAtt                                                                                                               <  2:1447391/150‑1 (MQ=255)                                    ttttAGACCAGGTTACCACTGGCTTACTGAAATGGCTTTTCAAGCAGAACCACTTCAAGAAAGTGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGa                                                                                                                                                 >  2:420930/1‑112 (MQ=255)                                    ttttAGACCAGGTTACCACTGGCTTACTGAAATGGCTTTTCAAGCAGAACCACTTCAAGAAAGTGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGa                                                                                                                                                 <  1:420930/112‑1 (MQ=255)                                         gACCAGGTTACCACTGGCTTACTGAAATGGCTTTTCAAGCAGAACCACTTCAAGAAAGTGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGCGATTGGCAGtttt                                                                                                      <  1:5457/150‑1 (MQ=255)                                                       tGGCTTACTGAAATGGCTTTTCAAGCAGAACCACTTCAAGAAAGTGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGCGATTGGCAGTTTTAAACCAGATTACCg                                                                                        <  2:232468/150‑1 (MQ=255)                                                               tGAAATGGCTTTTCAAGCAGAACCACTTCAAGAAAGTGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGCGATTGGCAGTTTTAAACCAGATTACCGCTGGTTGa                                                                                >  2:1030386/1‑150 (MQ=255)                                                                 aaaTGGCTTTTCAAGCAGAACCACTTCAAGAAAGTGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGc                                                                                                                                   <  1:1339043/97‑1 (MQ=34)                                                                 aaaTGGCTTTTCAAGCAGAACCACTTCAAGAAAGTGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGc                                                                                                                                   >  2:1339043/1‑97 (MQ=34)                                                                  aaTGGCTTTTCAAGCAGAACCACTTCAAGAAAGTGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGCGAtt                                                                                                               >  2:17176/1‑116 (MQ=38)                                                                  aaTGGCTTTTCAAGCAGAACCACTTCAAGAAAGTGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGCGAtt                                                                                                               <  1:17176/116‑1 (MQ=37)                                                                    tGGCTTTTCAAGCAGAACCACTTCAAGAAAGTGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGCGATTGGCAGTTTTAAACCAGATTACCGCTGGTTGACTGaa                                                                           >  2:76247/1‑150 (MQ=255)                                                                     ggCTTTTCAAGCAGAACCACTTCAAGAAAGTGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGCGATTGGCAGTTTTAAACCAGATTACCGCTGGTTGACTGaaa                                                                          <  1:1030386/150‑1 (MQ=255)                                                                        ttttCAAGCAGAACCACTTCAAGAAAGTGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGCGATTGGCAGTTTTAAACCAGATTACCGCTGGTTGACTGAAATgg                                                                       >  1:309521/1‑150 (MQ=255)                                                                            cAAGCAGAACCACTTCAAGAAAGTGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGCGATTGGCAGTTTTAAACCAGATTACCGCTGGTTGACTGAAATGGCttt                                                                   <  2:728266/150‑1 (MQ=255)                                                                              aGCAGAACCACTTCAAGAAAGTGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGCGATTGGCAGTTTTAAACCAGATTACCGCTGGTTGACTGAAATGGCTTTGc                                                                 <  1:1005141/150‑1 (MQ=255)                                                                              aGCAGAACCACTTCAAGAAAGTGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGCGATTGGCAGTTTTAAACCAGATTACCGCTGGTTGACTGAAATGGCTTTGc                                                                 >  1:1103050/1‑150 (MQ=255)                                                                                     ccACTTCAAGAAAGTGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGCGATTGGCAGTTTTAAACCAGATTACCGCTGGTTGACTGAAATGGCTTTGCAAGCAGa                                                          >  1:1522694/1‑150 (MQ=255)                                                                                            aaGAAAGTGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGCGATTGGCAGTTTTAAACCAGATTACCGCTGGTTGACTGAAATGGCTTTGCAAGCAGAACCACtt                                                   >  1:777084/1‑150 (MQ=255)                                                                                            aaGAAAGTGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGCGATTGGCAGTTTTAAACCAGATTACCGCTGGTTGACTGAAATGGCTTTGCAAGCAGAACCACtt                                                   <  1:76247/150‑1 (MQ=255)                                                                                              gAAAGTGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGCGATTGGCAGTTTTAAACCAGATTACCGCTGGTTGa                                                                                >  2:1024177/1‑119 (MQ=255)                                                                                              gAAAGTGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGCGATTGGCAGTTTTAAACCAGATTACCGCTGGTTGa                                                                                <  1:1024177/119‑1 (MQ=255)                                                                                                 cgcggCGGACTCAGCCGGATTCGGCCCTTCGGCCCCTGGGGTAGTAGGCGAGTACTCTAGCCAGCTGAGCTATGAGTCCGCGATTGGCAGTTTTAAACCAGATTACCGCTGGTTGACTGAAATGGCTTTGCAAGCAGAACCACTTCAAGa                                              <  2:1588190/147‑1 (MQ=17)                                                                                                   tGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGCGATTGGCAGTTTTAAACCAGATTACCGCTGGTTGACTGAAATGGCTTTGCAAGCAGAACCACTTCAAGaaa                                            <  2:1522694/150‑1 (MQ=255)                                                                                                   tGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGCGATTGGCAGTTTTAAACCAGATTACCGCTGGTTGACTGAAATGGCTTTGCAAGCAGAACCACTTCAAGaaa                                            <  1:1206778/150‑1 (MQ=255)                                                                                                     gCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGCGATTGGCAGTTTTAAACCAGATTAc                                                                                          <  1:1370838/102‑1 (MQ=255)                                                                                                     gCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGCGATTGGCAGTTTTAAACCAGATTAc                                                                                          >  2:1370838/1‑102 (MQ=255)                                                                                                        gACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGCGATTGGCAGTTTTAAACCAGATTACCGCTGGTTGACTGAAATGGCTTTGCAAGCAGAACCACTTCAAGAAAGTGGc                                       <  2:777084/150‑1 (MQ=255)                                                                                                           tCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGCGATTGGCAGTTTTAAACCAGATTACCGc                                                                                       <  2:1248074/99‑1 (MQ=255)                                                                                                           tCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGCGATTGGCAGTTTTAAACCAGATTACCGc                                                                                       >  1:1248074/1‑99 (MQ=255)                                                                                                           tCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGCGATTGGCAGTTTTAAACCAGATTACCGCTGGTTGACTGAAATGGCTTTGCAAGCAGAACCACTTCAAGa                                              <  2:1548040/140‑1 (MQ=255)                                                                                                           tCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGCGATTGGCAGTTTTAAACCAGATTACCGCTGGTTGACTGAAATGGCTTTGCAAGCAGAACCACTTCAAGa                                              >  1:1548040/1‑140 (MQ=255)                                                                                                               tcggctacgaaccgagcggtcgcaggttcgTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGCGATTGGCAGTTTTAAACCa                                                                                                <  2:933586‑M2/56‑1 (MQ=255)                                                                                                               tcggctacgaaccgagcggtcgcaggttcgTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGCGATTGGCAGTTTTAAACCa                                                                                                >  1:933586‑M2/31‑86 (MQ=255)                                                                                                               cagGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGCGATTGGCAGTTTTAAACCAGATTACCGCTGGTTGACTGAAATGGCTTTGCAAGCAGAACCACTTCAAGAAAGTGGCGGACTca                                >  2:880887/1‑150 (MQ=255)                                                                                                                  gATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGCGATTGGCAGTTTTAAACCAGATTACCGCTGGTTGACTGAAATGGCTTTGCAAGCAGAACCACTTCAAGAAAGTGGCGGACTcagca                             <  1:880887/150‑1 (MQ=255)                                                                                                                      cgaaccgagcggtcgcaggttcgTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGCGATTGGCAGtt                                                                                                        <  2:1284778‑M2/48‑1 (MQ=255)                                                                                                                      cgaaccgagcggtcgcaggttcgTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGCGATTGGCAGtt                                                                                                        >  1:1284778‑M2/24‑71 (MQ=255)                                                                                                                       gAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGCGATTGGCAGTTTTAAACCAGATTACCGCTGGTTGACTGAAATGGc                                                                      <  2:299334/104‑1 (MQ=255)                                                                                                                       gAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGCGATTGGCAGTTTTAAACCAGATTACCGCTGGTTGACTGAAATGGc                                                                      >  1:299334/1‑104 (MQ=255)                                                                                                                        aaCCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGCGATTGGCAGTTTTAAACCAGATTACCGCTGGTTGACTGAAATGGCTTTGCAAGCAGAACCACTTCAAGAAAGTGGCGGACTCAGCAGGATTc                       >  2:973330/1‑150 (MQ=255)                                                                                                                               gACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGCGATTGGCAGTTTTAAACCAGATTACCGCTGGTTGACTGAAATGGCTTTGCAAGCAGAACCACTTCAAGAAAGTGGCg                                      >  2:1426622/1‑128 (MQ=255)                                                                                                                               gACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGCGATTGGCAGTTTTAAACCAGATTACCGCTGGTTGACTGAAATGGCTTTGCAAGCAGAACCACTTCAAGAAAGTGGCg                                      <  1:1426622/128‑1 (MQ=255)                                                                                                                                aCCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGCGATTGGCAGTTTTAAACCAGATTACCGCTGGTTGACTGAAATGGCTTTGCAAGCAGAACCACTTCAAGAAAGTgg                                        >  2:361079/1‑125 (MQ=255)                                                                                                                                aCCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGCGATTGGCAGTTTTAAACCAGATTACCGCTGGTTGACTGAAATGGCTTTGCAAGCAGAACCACTTCAAGAAAGTgg                                        <  1:361079/125‑1 (MQ=255)                                                                                                                                             tAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGCGATTGGCAGTTTTAAACCAGATTACCGCTGGTTGACTGAAATGGCTTTGCAAGCAGAACCACTTCAAGAAAGTGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTc  <  2:1103050/150‑1 (MQ=255)                                                                                                                                             |                                                                                                                                                      CTCTATCCAGCTGAGCTATGAGTCCGTGATGGTAGTTTTAGACCAGGTTACCACTGGCTTACTGAAATGGCTTTTCAAGCAGAACCACTTCAAGAAAGTGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGCGATTGGCAGTTTTAAACCAGATTACCGCTGGTTGACTGAAATGGCTTTGCAAGCAGAACCACTTCAAGAAAGTGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTC  >  NC_002947/5079252‑5079541

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.