New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 5506609 = | 91 (1.030) | 12 (0.180) | 11/190 | NT | 19.6% | intergenic (+20/‑179) | PP_4839/cycA | iron‑regulated membrane protein/D‑alanine/beta‑alanine/D‑serine/glycine permease |
? | NC_002947 | 5506680 = | 29 (0.430) | intergenic (+91/‑108) | PP_4839/cycA | iron‑regulated membrane protein/D‑alanine/beta‑alanine/D‑serine/glycine permease |
GCTGCAGTCTTCTTGTCAGAGGTAGCCGGCTAGGCTAACACGCGCGTTCCAGATCGGGGCGCGACAGATCGACTCTGCATTTTCGGCTCAGCATTTCGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGCGGTC‑CCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5506785‑5506609 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtaggagcgggtttacccgcgaagaggccGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCACCCATAGCGACAGATGAACCGCAC > NC_002947/5506680‑5506826 GCTGCAGTCTTCTTGTCAGAGGTAGCCGGCTAGGCTAACACGCGCGTTCCAGATCGGGGCGCGACAGATCGACTCTGCATTTTCGGCTCAGCATTTCGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGCGGTC‑CCTCGT > 2:2136995/1‑150 TCTTGTCAGAGGTAGCCGGCTAGGCTAACACGCGCGTTCCAGATCGGGGCGCGACAGATCGACTCTGCATTTTCGGCTCAGCATTTCGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCCCCTACAACGCGGTC‑CCTCGTAGGAGCGGGg > 2:1640439/1‑149 TTGTCAGAGGTAGCCGGCTAGGCTAACACGCGCGTTCCAGATCGGGGCGCGACAGATCGACTCTGCATTTTCGGCTCAGCATTTCGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGCGGTC‑CCTCGTAGGAGCGG > 1:1617479/1‑146 TTGTCAGAGGTAGCCGGCTAGGCTAACACGCGCGTTCCAGATCGGGGCGCGACAGATCGACTCTGCATTTTCGGCTCAGCATTTCGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGCGGTC‑CCTCGTAGGAGCGG < 2:1617479/146‑1 GTCAGAGGTAGCCGGCTAGGCTAACACGCGCGTTCCAGATCGGGGCGCGACAGATCGACTCTGCATTTTCTGCTCAGCATTTCGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGCGGTC‑CCTCGTAGGAGCGGGTTTAC > 1:1866280/1‑150 CAGAGGTAGCCGGCTAGGCTAACACGCGCGTTCCAGATCGGGGCGCGACAGATCGACTCTGCATTTTCGGCTCAGCATTTCGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGCGGTC‑CCTCGTAGGAGCGGGTTTACCC < 1:1869588/150‑1 GAGGTAGCCGGCTAGGCTAACACGCGCGTTCCAGATCGGGGCGCGACAGATCGACTCTGCATTTTCGGCTCAGCATTTCGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGCGGTC‑CCTCGTAGGAGCGGGTTTACCCGC < 2:1187700/150‑1 AGGTAGCCGGCTAGGCTAACACGCGCGTTCCAGATCGGGGCGCGACAGATCGACTCTGCATTTTCGGCTCAGCATTTCGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGCGGTC‑CCTCGTAGGAGCGGG > 1:1030646/1‑140 AGGTAGCCGGCTAGGCTAACACGCGCGTTCCAGATCGGGGCGCGACAGATCGACTCTGCATTTTCGGCTCAGCATTTCGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGCGGTC‑CCTCGTAGGAGCGGG < 2:1030646/140‑1 TAGGCTAACACGCGCGTTCCAGATCGGGGCGCGACAGATCGACTCTGCATTTTCGGCTCAGCATTTCGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGCGGTC‑CCTCGTAGGAGCGGGTTT > 2:656482/1‑132 TAGGCTAACACGCGCGTTCCAGATCGGGGCGCGACAGATCGACTCTGCATTTTCGGCTCAGCATTTCGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGCGGTC‑CCTCGTAGGAGCGGGTTT < 1:656482/132‑1 GCGCGTTCCAGATCGGGGCGCGACAGATCGACTCTGCATTTTCGGCTCAGCATTTCGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACGA‑GGGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAAT < 1:854326/150‑1 CAGATCGGGGCGCGACAGATCGACTCTGCATTTTCGGCTCAGCATTTCGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGCGGTC‑CCTCGTAGGAGCGGGTTTACCCGCGAAGAGGC < 1:1350563/127‑1 CAGATCGGGGCGCGACAGATCGACTCTGCATTTTCGGCTCAGCATTTCGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGCGGTC‑CCTCGTAGGAGCGGGTTTACCCGCGAAGAGGC > 2:1350563/1‑127 GATCGGGGCGCGACAGATCGACTCTGCATTTTCGGCTCAGCATTTCGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGCGGTC‑CCTCGTAGGAGCGGG > 1:1056334/1‑108 GATCGGGGCGCGACAGATCGACTCTGCATTTTCGGCTCAGCATTTCGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGCGGTC‑CCTCGTAGGAGCGGG < 2:1056334/108‑1 GGTAAACCCGCTCCTACAACGCGGTC‑CCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTG < 1:1158819/116‑1 GGTAAACCCGCTCCTACAACGCGGTC‑CCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTG > 2:1158819/1‑116 ACCCGCTCCTACAACGCGGTC‑CCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAAC > 2:752418/1‑115 ACCCGCTCCTACAACGCGGTC‑CCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAAC < 1:752418/115‑1 CCCGCTCCTACAACGCGGTC‑CCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGA > 2:936981/1‑91 CCCGCTCCTACAACGCGGTC‑CCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGA < 1:936981/91‑1 CCGCTCCTACAACGCGGTC‑CCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAG > 2:428813/1‑150 CCGCTCCTACAACGCGGTC‑CCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAG > 2:203026/1‑150 CGCTCCTACAACGCGGTC‑CCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGA < 1:428813/150‑1 ACAACGCGGTC‑CCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGC > 2:1905618/1‑65 ACAACGCGGTC‑CCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGC < 1:1905618/65‑1 TCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAAC < 1:203026/150‑1 GGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCAC > 2:1528985/1‑150 GAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGTGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTA > 2:495475/1‑101 GAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGTGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTA < 1:495475/101‑1 GCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCA < 1:2031590/127‑1 GCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCA > 2:2031590/1‑127 GGGTTTACCCGCGAAGAGGCCAGCACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCATCCTATGACGCAAACCTCACCCATA < 2:854326/150‑1 CCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCACCCATAGCGACAGA > 2:1426619/1‑150 CCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGC < 1:2048118/78‑1 CCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGC > 2:2048118/1‑78 CCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACACGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCACCCATAGCGACAGA > 1:1908595/1‑150 CCGCGAAGAGGCCAGCACAGGCGAAATGATGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGC > 1:1972042/1‑119 CCGCGAAGAGGCCAGCACAGGCGAAATGATGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGC < 2:1972042/119‑1 GAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCACCCATAGCGACAGATGAA < 1:1187700/150‑1 AAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCACCCATAGCGACAGATGAAC < 1:1647635/150‑1 AAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCACCCATAGCGACAGATGAAC < 1:692334/150‑1 AGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCACCCATAGCGACAGATGAACC < 1:107607/150‑1 AGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCACCCATAGCGACAGATGAACC < 1:107934/150‑1 GAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCACCCA < 1:1025540/133‑1 GAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCACCCA > 2:1025540/1‑133 GCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTCGAGCTGTACCTCTGACAAGAAGACTGCAGCCTATGACACAAACCTCACCCATAGCGACAGATGAACCGCAC > 1:145793/1‑150 GCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCACCCATAGCGACAGATGAACCGCAC < 1:1528985/150‑1 GCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCACCCATAGCGACAGATGAACCGCAC > 2:1034522/1‑150 GCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCACCCATAGCGACAGATGAACCGCAC > 1:2173788/1‑150 GCTGCAGTCTTCTTGTCAGAGGTAGCCGGCTAGGCTAACACGCGCGTTCCAGATCGGGGCGCGACAGATCGACTCTGCATTTTCGGCTCAGCATTTCGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGCGGTC‑CCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5506785‑5506609 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtaggagcgggtttacccgcgaagaggccGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAACCTCACCCATAGCGACAGATGAACCGCAC > NC_002947/5506680‑5506826 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |