mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.27.1 revision 87c22d663cc3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 38 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1096961 = | 122 (0.900) | 46 (0.520) | 3/306 | 9.8 | 37.4% | intergenic (+132/+604) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | = 1097503 | 74 (0.830) | intergenic (+674/+62) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | 4542682 = | 51 (0.380) | 7 (0.050) | 7/448 | 10.0 | 9.4% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 86 (0.660) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 315401 = | NA (NA) | 5 (0.040) | 5/440 | 11.0 | NA | noncoding (173/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | 315627 = | NA (NA) | noncoding (399/1255 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | 381681 = | NA (NA) | 4 (0.030) | 4/448 | 11.7 | NA | noncoding (422/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 381753 = | NA (NA) | noncoding (494/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 4335416 | 127 (0.930) | 4 (0.030) | 4/452 | 11.8 | 2.9% | coding (175/1644 nt) | eptA | lipid A phosphoethanolamine transferase |
| ? | NC_000913 | = 4335751 | 149 (1.130) | coding (1281/1338 nt) | adiC | arginine:agmatine antiporter | |||||
| * | ? | NC_000913 | 2566515 = | 131 (0.960) | 4 (0.030) | 4/450 | 11.8 | 3.2% | coding (370/1404 nt) | eutA | reactivating factor for ethanolamine ammonia lyase |
| ? | NC_000913 | 2566575 = | 119 (0.910) | coding (310/1404 nt) | eutA | reactivating factor for ethanolamine ammonia lyase | |||||
| * | ? | NC_000913 | = 54955 | 181 (1.330) | 4 (0.030) | 4/464 | 12.0 | 2.2% | coding (2155/2355 nt) | lptD | LPS assembly OM complex LptDE, beta‑barrel component |
| ? | NC_000913 | 54959 = | 182 (1.350) | coding (2151/2355 nt) | lptD | LPS assembly OM complex LptDE, beta‑barrel component | |||||
| * | ? | NC_000913 | = 1517054 | 151 (1.110) | 4 (0.030) | 3/440 | 12.3 | 2.7% | intergenic (+52/+45) | patD/yncL | gamma‑aminobutyraldehyde dehydrogenase/stress‑induced small inner membrane enterobacterial protein |
| ? | NC_000913 | = 1517063 | 147 (1.150) | intergenic (+61/+36) | patD/yncL | gamma‑aminobutyraldehyde dehydrogenase/stress‑induced small inner membrane enterobacterial protein | |||||
| * | ? | NC_000913 | 3448913 = | 142 (1.040) | 3 (0.020) | 3/444 | 12.4 | 2.1% | coding (257/411 nt) | rplP | 50S ribosomal subunit protein L16 |
| ? | NC_000913 | = 3448906 | 138 (1.070) | coding (264/411 nt) | rplP | 50S ribosomal subunit protein L16 | |||||
| * | ? | NC_000913 | = 364090 | 146 (1.100) | 6 (0.040) +GGAT |
3/446 | 12.4 | 3.9% | coding (2216/3075 nt) | lacZ | beta‑D‑galactosidase |
| ? | NC_000913 | 364091 = | 149 (1.100) | coding (2215/3075 nt) | lacZ | beta‑D‑galactosidase | |||||