| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3941442 = | 153 (1.020) | 24 (0.280) +ATTCTTTATGCTTATTTCAGCGTCGGTTTGTCGGTTAAATG |
6/114 | 13.9 | 21.3% | intergenic (‑115/‑366) | yieP/rrsC | putative transcriptional regulator/16S ribosomal RNA of rrnC operon |
| ? | NC_000913 | 4035099 = | 152 (1.020) | coding (492/546 nt) | hemG | protoporphyrin oxidase, flavoprotein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
TGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCATTATAGGGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3941539‑3941442‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGCGAATTTCGCCCGAGAAATCGCCCATTTAACC > NC_000913/4035099‑4035132 ||||||||||||||||||||||||||||||||||||||||| TGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCATTATAGGGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTA < 2:3312550/99‑1 TTTGCCGTTGTTCCGTGTCAGTGGTGGCGCATTATAGGGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATT > 1:3444919/1‑99 TGCCGTTGTTCCGTGTCAGTGGTGGCGCATTATAGGGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCT < 1:2230342/99‑1 GCCGTTGTTCCGTGTCAGTGGTGGCGCATTATAGGGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTT < 1:3326740/99‑1 GCCGTTGTTCCGTGTCAGTGGTGGCGCATTATAGGGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTT < 1:543723/99‑1 GCCGTTGTTCCGTGTCAGTGGTGGCGCATTATAGGGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTT > 1:3570687/1‑99 CCGTTGTTCCGTGTCAGTGGTGGCGCATTATAGGGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTT < 2:723593/99‑1 CCGTTGTTCCGTGTCAGTGGTGGCGCATTATAGGGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTT > 1:1849739/1‑99 CGTTGTTCCGTGTCAGTGGTGGCGCATTATAGGGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTA > 1:2997579/1‑99 CGTTGTTCCGTGTCAGCGGTGGCGCATTATAGGGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTA < 2:2680313/99‑1 GTTGTTCCGTGTCAGTGGTGGCGCATTATAGGGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATATTTTTCTGACCGCGCATTTTTTATTCTTTAT < 1:3174064/99‑1 TGTTCCGTGTCAGTGGTGGCGCATTATAGGGAGTTATTGCGGCCTGGCAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGC < 2:3022511/99‑1 TGTTCCGTGTCAGTGGTGGCGCATTATAGGGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGC < 1:1570356/99‑1 TTCCGTGTCAGTGGTGGCGCATTATAGGGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTT > 1:712499/1‑99 TTCCGTGTCAGTGGTGGCGCATTATAGGGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTT < 1:3294046/99‑1 CCGTGTCAGTGGTGGCGCATTATAGGGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTAT < 2:2963891/99‑1 CGTGTCAGTGGTGGCGCATTATAGGGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATT < 2:2572723/99‑1 GTGTCAGTGGTGGCGCATTATAGGGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTT > 1:2584252/1‑99 TGTCAGTGGTGGCGCATTATAGGGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTTC > 1:2104074/1‑99 GTCAGTGGTGGCGCATTATAGGGAGTTATTCCGGCCTGACAATAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTTCA > 1:1253622/1‑99 GTCAGTGGTGGCGCATTATAGGGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTTCA < 1:3030761/99‑1 GTCAGTGGTGGCGCATTATAGGGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTTCA < 2:367947/99‑1 GTCAGTGGTGGCGCATTATAGGGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTTCA < 2:3242286/99‑1 TCAGTGGTGGCGCATTATAGGGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTTCAG > 1:2527114/1‑99 CAGTGGTGGCGCATTATAGGGAGTTAGCCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTTCAGC > 1:3484109/1‑99 AGTGGTGGCGCATTATAGGGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTTCAGCG > 2:1111487/1‑99 TGGTGGCGCATTATAGGGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTTCAGCGTC > 2:2098879/1‑99 TGGTGGCGCATTATAGGGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTTCAGCGTC > 2:2831178/1‑99 TGGCGCATTATAGGGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTTCAGCGTCGGT < 2:3094733/99‑1 TGGCGCATTATAGGGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTTCAGCGTCGGT > 2:1647750/1‑99 TGGCGCATTATAGGGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTTCAGCGTCGGT > 1:50823/1‑99 GCGCATTATAGGGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTTCAGCGTCGGTTT < 2:1310513/99‑1 GCGCATTATAGGGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTTCAGCGTCGGTTT > 2:822521/1‑99 CGCATTATAGGGAGTTATTCCGGCCTGACAATATTAAATTTAAAATAAGTTTCTGACCGCGCGTTTTTTATTCTTTATGCTTATTTCAGCGTCGGTTTG < 2:1466177/99‑1 GCATTATAGGGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTTCAGCGTCGGTTTGT > 2:2577499/1‑99 ATTATAGGGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTTCAGCGTCGGTTTGTCG < 1:1633126/99‑1 ATTATAGGGAGTTATTACGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTTCAGCGTCGGTTTGTCG < 1:3259855/99‑1 TTATAGGGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTTCAGCGTCGGTTTGTCGG > 2:1756997/1‑99 TTATAGGGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTTCAGCGGCGGTTTGTCGG < 2:1099275/99‑1 TATAGGGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTTCAGCGTCGGTTTGTCGGT < 2:3734505/99‑1 TATAGGGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTTCAGCGTCGGTTTGTCGGT < 2:1060279/99‑1 TATAGGGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTTCAGCGTCGGTTTGTCGGT < 1:3591960/99‑1 ATAGGGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTTCAGCGTCGGTTTGTCGGTT < 1:2295909/99‑1 TAGGGTGTTATTCCGGCCTGACAAGAGGAA‑‑‑‑AAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTTCAGCGTCGGTTTGTCGGTTACATG < 2:3338378/99‑1 TAGGGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTCTGCTTATTTCAGCGTCGGTTTGTCGGTTA > 1:2240323/1‑99 TAGGGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTTCAGCGTCGGTTTGTCGGTTA > 1:2596368/1‑99 TAGGGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTTCAGCGTCGGTTTGTCGGTTA > 1:2660098/1‑99 AGGGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTTCAGCGTCGGTTTGTCGGTTAA > 1:613039/1‑99 GGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTTCTGCGTCGGTTTGTCGGTTAAAT > 2:3186636/1‑99 GGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTTCAGCGTCGGTTTGTCGGTTAAct > 2:3149125/1‑97 GGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTTCAGCGTCGGTTTGTCGGTTAAAT > 1:930590/1‑99 GGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTTCAGCGTCGGTTTGTCGGTTAAAT < 2:3792211/99‑1 GGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTTCAGCGTCGGTTTGTCGGTTAAAT > 2:3140567/1‑99 GGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTTCAGCGTCGGTTTGTCGGTTAAAT > 2:2768310/1‑99 GGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTTCAGCGTCGGTTTGTCGGTTAAAT < 1:3174100/99‑1 GGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTTCAGCGTCGGTTGTTCGGTTAAAT > 2:656608/1‑99 GGAGTTATTCCGGCCTCACAAGCGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTTCAGCGTCGGTTTGTCGGTTAAAT < 2:134384/99‑1 GAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTTCAGCGTCGGTTTGTCGGTTAAATG > 2:269717/1‑99 AGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTTCAGCGTCGGTTTGTCGGTTAAATGG > 1:763884/1‑99 AGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTTCAGCGTCGGTTTGTCGGTTAAATGG < 1:559242/99‑1 GTTATTCCTGCTTGACAAGATGAAATTTAAAATTATTTTCTGACCGCGCATTTTTTATTCTTTACGCTTATTTCAGCGTCGGTTTGTCGGTTAAATGGG < 2:2351409/99‑1 GTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTTCAGCGTCGGTTTGTCGGTTAAATGGG < 2:378829/99‑1 GTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTTCAGCGTCGGTTTGTCGGTTAAATGGG > 1:2466014/1‑99 TTATTCCGGCCTGACAAGGGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTTCAGCGTCGGTTTGTCGGTTAAATGGGC < 2:2283301/99‑1 TTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTTCAGCGTCGGTTTGTCGGTTAAATGGGC < 1:264807/99‑1 TTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTTCAGCGTCGGTTTGTCGGTTAAATGGGC < 1:1535257/99‑1 TTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTTCAGCGTCGGTTTGTCGGTTAAATGGGC > 2:3711766/1‑99 TTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTTCAGCGTCGGTTTGTCGGTTAAATGGGC < 2:1790161/99‑1 TTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTTCAGCGTCGGTTTGTCGGTTAAATGGGC > 2:1156759/1‑99 TTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTTCAGCGTCGGTTTGTCGGTTAAATGGGC > 1:2704881/1‑99 TTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTTCAGCGTCGGTTTGTCGGTTAAATGGGC < 2:3000385/99‑1 TTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTAGGCTTATTTCAGCGTCGGTTTGTCGGTTAAATGGGC < 2:772305/99‑1 ATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTTCAGCGTCGGTTTGTCGGTTAAATGGGCGA < 1:2265944/99‑1 ATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTTCAGCGTCGGTTTGTCGGTTAAATGGGCGA < 2:1513323/99‑1 AATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTTCAGCGTCGGTTTGTCGGTTAAATGGGCGAATTTCGCCCGAGAAATCGCC < 1:414400/99‑1 ATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTTCAGCGTCGGTTTGTCGGTTAAATGGGCGAATTTCGCCCGAGAAATCGCCC < 1:1859463/99‑1 ATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTTCAGCGTCGGTTTGTCGGTTAAATGGGCGAATTTCGCCCGAGAAATCGCCC < 1:978361/99‑1 ATTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTTCAGCGTCGGTTTGGCGGTTAAATGGTCTAATTTCGCCCGAGAAATCGCCC < 1:1871356/99‑1 TTTAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTTCAGCGTCGGTTTGTCGGTTAAATGGGCGAATTTCGCCCGAGAAATCGCCCA < 1:440770/99‑1 TAAAATAATTTTCTGACCGCGCATTTTTTATTCTTTATGCTTATTTCAGCGTCGGTTTGTCGGTTAAATGGGCGAATTTCGCCCGAGAAATCGCCCATT < 1:1448810/99‑1 atgATTTTCTGGCCGCGGATTTTTTATTCTTTATGCTTATTTCAGCGTCGGTTTGTCGGTTAAATGGGCGAATTTCGCCCGAGAAATCGCCCATTTAAC < 2:1735875/96‑1 TAATTTTCTGACCGCGCATTTTTTATTCTTTATTCTTATTTCAGCGTCGGTTTGTCGGTTAAATGGGCGAATTTCGCCCGAGAAATCGCCCATTTAACC < 2:1637556/99‑1 ||||||||||||||||||||||||||||||||||||||||| TGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCATTATAGGGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCGCATTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3941539‑3941442‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGCGAATTTCGCCCGAGAAATCGCCCATTTAACC > NC_000913/4035099‑4035132 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |