| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 127978 | 302 (1.050) | 16 (0.060) | 10/144 | NT | 5.3% | intergenic (+198/+131) | lctP_1/spa | L‑lactate permease/Immunoglobulin G‑binding protein A |
| ? | USA300TCH1516_ALE | = 128000 | 301 (1.170) | intergenic (+220/+109) | lctP_1/spa | L‑lactate permease/Immunoglobulin G‑binding protein A | |||||
TTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCA‑C‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/127881‑127978‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaatgca‑cGAGCAACATCTTTTGTTGCTCAGTGCATTTTTTATTTTACTTACTTTTCTAAACAACTTCTGAAACGCCTCAACACTTTCTACTCTGATT < USA300TCH1516_ALE/128000‑127911 TTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAA > 2:295806/1‑91TTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAA > 2:296020/1‑91TTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAA > 1:5035477/1‑91TTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAA > 1:3558262/1‑91TTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAAAAAAAAAAAA < 2:5291699/91‑1 TTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAA > 2:24859/1‑91 TTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAA < 1:1484118/91‑1 TTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAA > 2:1734877/1‑91 TTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAA < 1:1073372/91‑1 TTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAA > 2:2122885/1‑91 TTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAA < 2:4800788/91‑1 TTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAA < 1:5551129/91‑1 TTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAA < 1:3944070/91‑1 TTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAA < 2:5122121/91‑1 TTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAA < 1:3409232/91‑1 TTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAA < 1:3408571/91‑1 TTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAA < 2:674891/91‑1 TTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGCTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAA < 2:5460471/91‑1 TTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAAT > 2:4905427/1‑91 TTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAAT < 2:5060815/91‑1 TTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATG > 2:4166163/1‑91 TTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATG > 1:581102/1‑91 TTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATG > 2:5111084/1‑91 TTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATG > 1:2848498/1‑91 TTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATG < 1:4542821/91‑1 TAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGC < 2:4327067/91‑1 TAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGC < 2:4900490/91‑1 TAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGC < 1:3093150/91‑1 TAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGC < 2:1183418/91‑1 TAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGC < 1:3092806/91‑1 AATGCCTCAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCA < 1:4477097/91‑1 AATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCA < 2:2368957/91‑1 AATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCA > 2:4041300/1‑91 AATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCA < 1:3554352/91‑1 AATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTCTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTCAAATAAAAAATGCA > 1:4701233/1‑91 ATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCA‑C > 2:2100719/1‑91 AAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCA‑CGAGCAA < 1:3139711/91‑1 AAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCA‑CGAGCAA < 1:3140067/91‑1 TCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCA‑CGAGCAACATCTTT < 1:3837300/91‑1 ATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCA‑CGAGCAACATCTTTTG < 2:55387/91‑1 TATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTTGAAAAGTAAGTAAAATAAAAAATGCA‑CGAGCAACATCTTTTGT < 1:4411583/91‑1 TATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACCGAGCAACATCTTTTG < 2:3787586/91‑1 TATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCA‑CGAGCAACATCTTTTGT < 1:4025157/91‑1 ATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCA‑CGAGCAACATCTTTTGTTGC < 2:5558834/91‑1 AATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCA‑CGAGCAACATCTTTTGTTGCTCAG < 2:3015356/91‑1 AATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCA‑CGAGCAACATCTTTTGTTGCTCAG < 2:3015340/91‑1 AATCAGAGTAGAAAGTGATGAGGCGTTTAAAAAGTTGTTTAGAAAAGAAAGTAAAATAAAAAATGCA‑CGAGCAACATCTTTTGTTGCTCAG < 2:611555/91‑1 AGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCA‑CGAGCAACATCTTTTGTTGCTCAGTGCATT < 1:4533501/91‑1 AGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCA‑CGAGCAACATCTTTTGTTGCTCAGTGCATT < 2:3915840/91‑1 GTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCA‑CGAGCAACATCTTTTGTTGCTCAGTGCATTT < 2:703639/91‑1 GAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCA‑CGAGCAACATCTTTTGTTGCTCAGTGCATTTTTT < 2:542898/91‑1 TTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCA‑CGAGCAACATCTTTTGTTGCTCAGTGCATTTTTTATTTTAC < 1:3848914/91‑1 AAATGCA‑CGAGCAACATCTTTTGTTGCTCAGTGCATTTTTTATTTTACTTACTTTTCTAAACAACTTCTGAAACGCCTCAACACTTTCTAC < 2:1351585/91‑1 AAATGCA‑CGAGCAACATCTTTTGTTGCTCAGTGCATTTTTTATTTTACTTACTTTTCTAAACAACTTCTGAAACGCCTCAACACTTTCTAC > 2:1609420/1‑91 AAATGCA‑CGAGCAACATCTTTTGTTGCTCAGTGCATTTTTTATTTTACTTACTTTTCTAAACAACTTCTGAAACGCCTCAACACTTTCTAC > 1:1967949/1‑91 AAATGCA‑CGAGCAACATCTTTTGTTGCTCAGTGCATTTTTTATTTTACTTACTTTTCTAAACAACTTCTGAAACGCCTCAACACTTTCTAC > 1:713052/1‑91 AATGCA‑CGAGCAACATCTTTTGTTGCTCAGTGCATTTTTTATTTTACTTACTTTTCTAAACAACTTCTGAAACGCCTCAACACTTTCTACT < 2:1008203/91‑1 AATGCA‑CGAGCAACATCTTTTGTTGCTCAGTGCATTTTTTATTTTACTTACTTTTCTAAACAACTTCTGAAACGCCTCAACACTTTCTACT < 2:5429160/91‑1 AATGCA‑CGAGCAACATCTTTTGTTGCTCAGTGCATTTTTTATTTTACTTACTTTTCTAAACAACTTCTGAAACGCCTCAACACTTTCTACT < 1:3629866/91‑1 AATGCA‑CGAGCAACATCTTTTGTTGCTCAGTGCATTTTTTATTTTACTTACTTTTCTAAACAACTTCTGAAACGCCTCAACACTTTCTACT < 1:3646327/91‑1 AATGCA‑CGAGCAACATCTTTTGTTGCTCAGTGCATTTTTTATTTTACTTACTTTTCTAAACAACTTCTGAAACGCCTCAACACTTTCTACT > 2:674188/1‑91 AATGCA‑CGAGCAACATCTTTTGTTGCTCAGTGCATTTTTTATTTTACTTACTTTTCTAAACAACTTCTGAAACGCCTCAACACTTTCTACT < 2:2501744/91‑1 AATGCA‑CGAGCAACATCTTTTGTTGCTCAGTGCATTTTTTATTTTACTTACTTTTCTAAACAACTTCTGAAACGCCTCAACACTTTCTACT > 2:784953/1‑91 AATGCA‑CGAGCAACATCTTTTGTTGCTCAGTGCATTTTTTATTTTACTTACTTTTCTAAACAACTTCTGAAACGCCTCAACACTTTCTACT < 2:1008248/91‑1 AATGCA‑CGAGCAACATCTTTTGTTGCTCAGTGCATTTTTTATTTTACTTACTTTTCTAAACAACTTCTGAAACGCCTCAACACTTTCTACT < 2:31581/91‑1 AATGCA‑CGAGCAACATCTTTTGTTGCTCAGTGCATTTTTTATTTTACTTACTTTTCTAAACAACTTCTGAAACGCCTCAACACTTTCTACT > 1:1050779/1‑91 ATGCA‑CGAGCAACATCTTTTGTTGCTCAGTGCATTTTTTATTTTACTTACTTTTCTAAACAACTTCTGAAACGCCTCAACACTTTCTACTC < 2:1337304/91‑1 ATGCA‑CGAGCAACATCTTTTGTTGCTCAGTGCATTTTTTATTTTACTTACTTTTCTAAACAACTTCTGAAACGCCTCAACACTTTCTACTC < 1:702980/91‑1 ATGCA‑CGAGCAACATCTTTTGTTGCTCAGTGCATTTTTTATTTTACTTACTTTTCTAAACAACTTCTGAAACGCCTCAACACTTTCTACTC < 2:3552941/91‑1 ATGCA‑CGAGCAACATCTTTTGTTGCTCAGTGCATTTTTTATTTTACTTACTTTTCTAAACAACTTCTGAAACGCCTCAACACTTTCTACTC < 2:91789/91‑1 ATGCA‑CGAGCAACATCTTTTGTTGCTCAGTGCATTTTTTATTTTACTTACTTTTCTAAACAACTTCTGAAACGCCTCAACACTTTCTACTC < 2:3416301/91‑1 TGCA‑CGAGCAACATCTTTTGTTGCTCAGTGCATTTTTTATTTTACTTACTTTTCTAAACAACTTCTGAAACGCCTCAACACTTTCTACTCT > 2:1966499/1‑91 GCA‑CGAGTAACATCTTTTGTTGCTCAGTGCATTTTTTATTTTACTTACTTTTCTAAACAACTTCTGAAACGCCTCAACACTTTCTACTCTG < 2:4372787/91‑1 GCA‑CGAGCAACATCTTTTGTTGCTCAGTGCATTTTTTTTTTTTTTTTCTTTTCTAAACAACTTCTGAAACGCCTCAACACTTTCTACTCTG > 2:3695668/1‑91 GCA‑CGAGCAACATCTTTTGTTGCTCAGTGCATTTTTTATTTTACTTACTTTTCTAAACAACTTCTGAAACGCCTCAACACTTTCTACTCTG < 1:1524304/91‑1 GCA‑CGAGCAACATCTTTTGTTGCTCAGTGCATTTTTTATTTTACTTACTTTTCTAAACAACTTCTGAAACGCCTCAACACTTTCTACTCTG < 1:303249/91‑1 GCA‑CGAGCAACATCTTTTGTTGCTCAGTGCATTTTTTATTTTACTTACTTTTCTAAACAACTTCTGAAACGCCTCAACACTTTCTACTCTG < 2:2279883/91‑1 CA‑CGAGCAACATCTTTTGTTGCTCAGTGCATTTTTTATTTTACTTACTTTTCTAAACAACTTCTGAAACGCCTCAACACTTTCTACTCTGA > 2:1271598/1‑91 A‑CGAGCAACATCTTTTGTTGCTCAGTGCATTTTTTATTTTACTTACTTTTCTAAACAAGTTCTGAAACGCCTCAACACTTTCTACTCTGAT > 1:5536507/1‑91 A‑CGAGCAACATCTTTTGTTGCTCAGTGCATTTTTTATTTTACTTACTTTTCTAAACAACTTCTGAAACGCCTCAACACTTTCTACTCTGAT > 1:3111909/1‑91 A‑CGAGCAACATCTTTTGTTGCTCAGTGCATTTTTTATTTTACTTACTTTTCTAAACAACTTCTGAAACGCCTCAACACTTTCTACTCTGAT > 1:2929766/1‑91 A‑CGAGCAACATCTTTTGTTGCTCAGTGCATTTTTTATTTTACTTACTTTTCTAAACAACTTCTGAAACGCCTCAACACTTTCTACTCTGAT > 1:3896919/1‑91 A‑CGAGCAACATCTTTTGTTGCTCAGTGCATTTTTTATTTTACTTACTTTTCTAAACAACTTCTGAAACGCCTCAACACTTTCTACTCTGAT < 1:42137/91‑1 A‑CGAGCAACATCTTTTGTTGCTCAGTGCATTTTTTATTTTACTTACTTTTCTAAACAACTTCTGAAACGCCTCAACACTTTCTACTCTGAT < 1:1958697/91‑1 A‑CGAGCAACATCTTTTGTTGCTCAGTGCATTTTTTATTTTACTTACTTTTCTAAACAACTTCTGAAACGCCTCAACACTTTCTACTCTGAT < 1:5315744/91‑1 A‑CGAGCAACATCTTTTGTTGCTCAGTGCATTTTTTATTTTACTTACTTTTCTAAACAACTTCTGAAACGCCTCAACACTTTCTACTCTGAT < 2:351213/91‑1 A‑CGAGCAACATCTTTTGTTGCTCAGTGCATTTTTTATTTTACTTACTTTTCTAAACAACTTCTGAAACGCCTCAACACTTTCTACTCTGAT > 2:921638/1‑91 A‑CGAGCAACATCTTTTGTTGCTCAGTGCATTTTGTATTTTACTTACTTTTCTAAACAACTTCTGAAACGCCTCAACACTTACTACTCTGAT > 1:5624300/1‑91 CGAGCAACATCTTTTGTTGCTCAGTGCATTTTTTATTTTACTTACTTTTCTAAACAACTTCTGAAACGCCTCAACACTTTCTACTCTGATT < 2:5397564/91‑1 TTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCA‑C‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/127881‑127978‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaatgca‑cGAGCAACATCTTTTGTTGCTCAGTGCATTTTTTATTTTACTTACTTTTCTAAACAACTTCTGAAACGCCTCAACACTTTCTACTCTGATT < USA300TCH1516_ALE/128000‑127911 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |