BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 127978	302 (1.050)	16 (0.060)	10/144	NT	5.3%	intergenic (+198/+131)	lctP_1/spa	L‑lactate permease/Immunoglobulin G‑binding protein A
*	?	USA300TCH1516_ALE	= 128000	301 (1.170)	16 (0.060)	10/144	NT	5.3%	intergenic (+220/+109)	lctP_1/spa	L‑lactate permease/Immunoglobulin G‑binding protein A

Only 100 of 404 total aligned reads displayed.

TAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTAAAATTGGTTTGGATAAAATGATATCTAT  >  USA300TCH1516_ALE/127910‑128089

 aagcAGAGTATAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGAAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCg                                                                                          <  2:4483603/88‑1 (MQ=255)

    cAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCgtgc                                                                                       <  2:2279883‑M2/91‑5 (MQ=255)

    cAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTACTCgtgc                                                                                       <  2:4372787‑M2/91‑5 (MQ=255)

      gagTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCgtgcat                                                                                     <  2:91789‑M2/91‑7 (MQ=255)

      gagTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCgtgcat                                                                                     <  2:1337304‑M2/91‑7 (MQ=255)

       agTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCgtgcatt                                                                                    >  2:784953‑M2/1‑84 (MQ=255)

        gTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCgtgcattt                                                                                   >  1:1967949‑M2/1‑83 (MQ=255)

        gTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCgtgcattt                                                                                   >  1:713052‑M2/1‑83 (MQ=255)

          aGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAg                                                                                 <  1:5152187/91‑1 (MQ=255)

           gAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAga                                                                                >  1:322007/1‑91 (MQ=255)

           gAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAga                                                                                <  1:3696156/91‑1 (MQ=255)

           gAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAga                                                                                >  2:4694659/1‑91 (MQ=255)

            aaaGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAgat                                                                               >  1:2045326/1‑91 (MQ=255)

             aaGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAgatg                                                                              <  1:2404761/91‑1 (MQ=255)

             aaGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAgatg                                                                              >  1:1358177/1‑91 (MQ=255)

             aaGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAgatg                                                                              >  1:1152366/1‑91 (MQ=255)

                tgtTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGAtt                                                                           >  1:417849/1‑91 (MQ=255)

                tgtTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGAtt                                                                           <  2:3190499/91‑1 (MQ=255)

                  ttGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCt                                                                         >  2:2862626/1‑91 (MQ=255)

                   tGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAACTAAAATAAAAAATGCACTGAGCAACATAAGATGTTGCTCGTGCATTTAGATGATTCtt                                                                        <  1:5527342/91‑1 (MQ=255)

                    gAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTa                                                                       >  2:2864088/1‑91 (MQ=255)

                     aGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTAt                                                                      >  2:1062158/1‑91 (MQ=255)

                     aGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTAt                                                                      >  1:955643/1‑91 (MQ=255)

                     aGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTAt                                                                      >  1:4900089/1‑91 (MQ=255)

                      ggCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATc                                                                     >  1:3382223/1‑91 (MQ=255)

                       gCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCa                                                                    >  2:3539970/1‑91 (MQ=255)

                       gCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCa                                                                    <  1:1602108/91‑1 (MQ=255)

                          tttCAGAAGTTGTTTAGAAAAAAAAAAAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCAttt                                                                 <  2:4084946/91‑1 (MQ=255)

                           ttCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTc                                                                <  2:2467991/91‑1 (MQ=255)

                            tCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCa                                                               <  1:3155547/91‑1 (MQ=255)

                             cAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAGTGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCaa                                                              >  2:3342378/1‑91 (MQ=255)

                              aGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCaaa                                                             >  2:208331/1‑91 (MQ=255)

                                 aGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATaa                                                          >  1:823788/1‑91 (MQ=255)

                                  gttgttTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAg                                                         <  2:1408570/91‑1 (MQ=255)

                                   ttgttTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGa                                                        >  2:30610/1‑91 (MQ=255)

                                   ttgttTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGa                                                        >  2:1517634/1‑91 (MQ=255)

                                   ttgttTAGAAAAGTAAGTAAAAGAAAAAATGCACGGAGCAACAAAAGATGTTGCGCGTGCATTTAGATGATTCTTATCATTTCAAATAAGa                                                        <  1:4643130/91‑1 (MQ=255)

                                      tttAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAAtg                                                     <  1:2707753/91‑1 (MQ=255)

                                        tAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAAtgtg                                                   >  1:582865/1‑91 (MQ=255)

                                         aGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATgtgt                                                  <  1:5293709/91‑1 (MQ=255)

                                          gAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGtt                                                 <  2:1604/91‑1 (MQ=255)

                                             aagtaagtAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAAt                                              <  1:4317340/91‑1 (MQ=255)

                                               gtaagtaaAATAGAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCa                                            <  2:3596514/91‑1 (MQ=255)

                                               gtaagtaaAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCa                                            >  1:4575415/1‑91 (MQ=255)

                                               gtaagtaaAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGACTCTTATCATTTCAAATAAGAATGTGTTAATCa                                            >  2:4293569/1‑91 (MQ=255)

                                                taagtaaAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCaa                                           >  2:1194115/1‑91 (MQ=255)

                                                taagtaaAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCaa                                           <  2:4998796/91‑1 (MQ=255)

                                                  agtaaAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACg                                         >  1:2257592/1‑91 (MQ=255)

                                                  agtaaAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTCCAAATAAGAATGTGTTAATCAACg                                         >  2:2671747/1‑91 (MQ=255)

                                                    taaaataaaaAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGta                                       >  1:3776034/1‑91 (MQ=255)

                                                    taaaataaaaAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGta                                       >  2:1711565/1‑91 (MQ=255)

                                                          aaaaaaTGCACTGAGCAACAAAAGATGTTGCTCgtgcattttttattttacttacttttctaaacaacttctgaaacgcctcaacactttc                                 <  2:542898‑M2/91‑59 (MQ=255)

                                                           aaaaaTGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGt                                <  2:4452008/91‑1 (MQ=255)

                                                           aaaaaTGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGt                                <  2:2799733/91‑1 (MQ=255)

                                                           aaaaaTGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGt                                >  1:2919689/1‑91 (MQ=255)

                                                            aaaaTGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGtt                               >  1:1033231/1‑91 (MQ=255)

                                                             aaaTGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAGGAATGTGTTAATCAACGTATATAAGTTa                              >  2:4791767/1‑91 (MQ=255)

                                                             aaaTGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTa                              <  2:5600343/91‑1 (MQ=255)

                                                              aaTGCACTGAGCATCAAAAGATGTTGAGCGTGCATTTATATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTaa                             <  2:1980230/91‑1 (MQ=255)

                                                              aaTGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTaa                             <  2:341424/91‑1 (MQ=255)

                                                              aaTGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTaa                             <  1:188004/91‑1 (MQ=255)

                                                              aaTGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTaa                             <  2:313859/91‑1 (MQ=255)

                                                               aTGCGCTGAGCAACAGAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTaaa                            <  1:296020/91‑1 (MQ=255)

                                                               aTGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTaaa                            >  1:4084060/1‑91 (MQ=255)

                                                               aTGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTaaa                            <  1:5205052/91‑1 (MQ=255)

                                                                 gCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTAAAAt                          >  2:5111446/1‑91 (MQ=255)

                                                                  cACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTAAAAtt                         >  1:3513030/1‑91 (MQ=255)

                                                                   aCTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTAAAATTg                        >  2:4216542/1‑91 (MQ=255)

                                                                    cTGAGCAACAAAAGATGTTGCTCgtgcattttttattttactttcttttctaaacaactttttaaacgcctcatcactttctactctgatt                       <  2:611555‑M2/91‑69 (MQ=255)

                                                                    cTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTAAAATTgg                       <  1:5397564/91‑1 (MQ=255)

                                                                     tGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTAAAATTGGt                      <  1:2619091/91‑1 (MQ=255)

                                                                     tGAGCAACAAAAGATGTTGCTCGTGCATTCAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTAAAATTGGt                      >  2:1573864/1‑91 (MQ=255)

                                                                      gAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTAAAATTGGtt                     <  1:1302582/91‑1 (MQ=255)

                                                                      gAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTAAAATTGGtt                     <  1:5030474/91‑1 (MQ=255)

                                                                       aGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTAAAATTGGttt                    <  1:1783244/91‑1 (MQ=255)

                                                                         caacaaAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTAAAATTGGTTTgg                  <  2:3961260/91‑1 (MQ=255)

                                                                         caacaaAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTAAAATTGGTTTgg                  <  1:5583539/91‑1 (MQ=255)

                                                                          aacaaAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCCACGTATATAAGTTAAAATTGGTTTGGa                 >  2:2644971/1‑91 (MQ=255)

                                                                          aacaaAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTAAAATTGGTTTGGa                 <  2:4879621/91‑1 (MQ=255)

                                                                           acaaAAGATGTTGCTCgtgcattttttattttacttacttttctaaacaacttctgaaacgcctcaacactttctactctgattacatata                <  1:4025157‑M2/91‑76 (MQ=255)

                                                                           acaaAAGATGTTGCTCgtgcattttttattttacttacttttcaaaacaacttctgaaacgcctcaacactttctactctgattacatata                <  1:4411583‑M2/91‑76 (MQ=255)

                                                                           acaaAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTAAAATTGGTTTGGAt                >  1:2527305/1‑91 (MQ=255)

                                                                           acaaAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTAAAATTGGTTTGGAt                >  2:4037608/1‑91 (MQ=255)

                                                                           acaaAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTAAAATTGGTTTGGAt                <  1:475541/91‑1 (MQ=255)

                                                                            caaAAGATGTTGCTCgtgcattttttattttacttacttttctaaacaacttctgaaacgcctcaacactttctactctgattacatatat               <  2:55387‑M2/91‑77 (MQ=255)

                                                                            caaAAGATGTTGCTCggtgcattttttattttacttacttttctaaacaacttctgaaacgcctcaacactttctactctgattacatata               <  2:3787586‑M2/91‑77 (MQ=255)

                                                                             aaaaGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTAAAATTGGTTTGGATaa              <  2:3702495/91‑1 (MQ=255)

                                                                              aaaGATGTTGCTCGTGCATTTAGATGATTTTTATCATTGCAAATAAGAATGTGTTAAGCAACGTATATCAGTTACACTTGGTTTGGATaaa             >  2:1455777/1‑91 (MQ=255)

                                                                              aaaGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTAAAATTGGTTTGGATaaa             >  2:2174922/1‑91 (MQ=255)

                                                                                 gATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTAAAATTGGTTTGGATAAAATg          <  1:313369/91‑1 (MQ=255)

                                                                                 gATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTAAAATTGGTTTGGATAAAATg          <  2:1898057/91‑1 (MQ=255)

                                                                                   tGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTAAAATTGGTTTGGATAAAATGat        >  2:4634915/1‑91 (MQ=255)

                                                                                    gTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTAAAATTGGTTTGGATAAAATGata       <  2:3471134/91‑1 (MQ=255)

                                                                                    gTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTAAAATTGGTTTGGATAAAATGata       >  2:3644195/1‑91 (MQ=255)

                                                                                    gTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAACGTGTTAATCAACGTATATAAGTTAAAATTGGTTTGGATAAAATGata       >  2:2584176/1‑91 (MQ=255)

                                                                                    gTTGCTCGTGCATATAGATGATTCTTATCAGTTCAAATAAGAATGTGTCAATCAACGTATATAAGTTAAAATTGGTTTGGATATAATGata       >  1:4484712/1‑91 (MQ=255)

                                                                                     ttGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTAAAATTGGTTTGGATCAAATGatat      >  2:5360589/1‑91 (MQ=255)

                                                                                      tGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTAAAATTGGTTTGGATAAAATGAtatc     <  1:2143822/91‑1 (MQ=255)

                                                                                      tGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTAAAATTGGTTTGGATAAAATGAtatc     <  1:1088212/91‑1 (MQ=255)

                                                                                        cTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTAAAATTGGTTTGGATAAAATGAtatcta   >  1:857646/1‑91 (MQ=255)

TAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTAAAATTGGTTTGGATAAAATGATATCTAT  >  USA300TCH1516_ALE/127910‑128089

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.