| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 710532 | 299 (1.040) | 16 (0.060) | 11/142 | NT | 5.7% | intergenic (+25/+36) | tarA/tagH_1 | N‑acetylglucosaminyldiphosphoundecaprenol N‑acetyl‑beta‑D‑mannosaminyltransferase/Teichoic acids export ATP‑binding protein TagH |
| ? | USA300TCH1516_ALE | = 710552 | 264 (1.040) | intergenic (+45/+16) | tarA/tagH_1 | N‑acetylglucosaminyldiphosphoundecaprenol N‑acetyl‑beta‑D‑mannosaminyltransferase/Teichoic acids export ATP‑binding protein TagH | |||||
GTAGATTAAAGAGTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/710434‑710532‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaccgagAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTTTGCTTTGGCTATTTTATA < USA300TCH1516_ALE/710552‑710463 GTAGATTAAAGAGTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATA < 1:3078944/91‑1GTAGATTAAAGAGTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATA > 1:302341/1‑91 TAGATTAAAGAGTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAA > 2:4821641/1‑91 AGATTAAAGAGTATTACAATATTTATGTATAAAATAGCAAAAAAAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAA < 2:5034397/91‑1 GATTAAAGAGTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAA > 2:1348171/1‑91 GATTAAAGAGTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAA > 2:4000875/1‑91 GATTAAAGAGTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAA > 1:3669655/1‑91 GATTAAAGAGTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAA > 1:2484587/1‑91 GATTAAAGAGTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAA < 1:2205660/91‑1 GATTAAAGAGTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAA > 2:898670/1‑91 ATTAAAGAGTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAAC > 1:633533/1‑91 ATTAAAGAGTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAAC > 1:3456165/1‑91 ATTAAAGAGTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAAC < 1:3816524/91‑1 TTAAAGAGTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACC < 2:4406825/91‑1 TTAAAGAGTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACC > 1:2597046/1‑91 TTAAAGAGTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACC < 1:4463867/91‑1 TTAAAGAGTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACC < 2:610144/91‑1 TTAAAGAGTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACC > 1:957575/1‑91 TTAAAGAGTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACC > 2:5552140/1‑91 TTAAAGAGTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACC < 1:5261022/91‑1 TTAAAGAGTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACC < 1:3859655/91‑1 TTAAAGAGTATTCCAATAGTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACC < 1:5557964/91‑1 TAAAGAGTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCG < 1:4769114/91‑1 TAAAGAGTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCG > 2:4670409/1‑91 AAAGAGTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGA > 2:3499518/1‑91 AAAGAGTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGA > 2:1612132/1‑91 AAGAGTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAG < 1:4372340/91‑1 AAGAGTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAG > 2:2993492/1‑91 AAGAGTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAG > 2:2993425/1‑91 AAGAGTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAG < 1:2050022/91‑1 ATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATA < 2:4568770/77‑1 ATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATA > 1:4568770/1‑77 TTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGAATCTCCATTTAAGGA < 1:6965/91‑1 TTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGAATCTCCATTTAAGGA < 1:6640/91‑1 aATGAATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGATAAAAATAAAACCGAGAATCTCCATTTAAGGAT < 2:3843263/90‑1 TATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGAATCTCCATTTAAGGAT < 1:4524713/91‑1 TATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGAATCTCCATTTAAGGAT < 1:4524695/91‑1 TATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGAATCTCCATTTAAGGAT < 2:3843681/91‑1 ATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGAATCTCCATTTAAGGATT < 1:1697544/91‑1 GTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGAATCTCCATTTAAGGATTTC < 2:3120250/91‑1 TAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGAAGACAAAAATAAAACCGGGAATCTCCATTTAAGGATTTCCTC < 1:1750572/91‑1 AAATAGAAAAAGAAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGAATCTCCATTTAAGGATTTCCTCGG < 2:2077427/91‑1 AATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGAATCTCCATTTAAGGATTTCCTCGGT < 2:1593061/91‑1 aAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGCGAATCTCCATTTAAGGATTTCCTCGGTTT < 2:1915571/90‑1 TAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGAATCTCCATTTAAGGATTTCCTCGGTTT < 1:4746623/91‑1 AGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGAATCTCCATTTAAGGATTTCCTCGGTTTT < 1:757401/91‑1 GGCGAAATAATCATGATGACAAAAATAAAACCGAGAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCT < 2:3151870/91‑1 TGACAAAAATAAAACCGAGAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTT < 1:3440033/91‑1 AAAACCGAGAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTTTGCTTTGGCT < 1:1063845/91‑1 AAAACCGAGAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTTTGCTTTGGCT < 2:750179/91‑1 AAAACCGAGAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTTTGCTTTGGCT > 2:811240/1‑91 AAAACCGAGAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTTTGCTTTGGCT > 2:811924/1‑91 AAACCGAGATTCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTTTGCTTTGGCTA < 1:2708157/91‑1 AAACCGAGAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTTTGCTTTGGCTA > 1:5527531/1‑91 AAACCGAGAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTTTGCTTTGGCTA > 1:1628756/1‑91 AACCGAGAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTTTGCTTTGGCTAT < 1:1341245/91‑1 AACCGAGAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTTTGCTTTGGCTAT < 2:2646582/91‑1 AACCGAGAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTTTGCTTTGGCTAT < 1:1341246/91‑1 AACCGAGAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTTTGCTTTGGCTAT > 1:1631641/1‑91 AACCGAGAATCTCCATTTAAAGATTTACTCGGTTTTATTTTTGTCATCATAATTATTTCGCCTTTTTTATTTTTCTTTTTGCTTTGGCTtt > 2:437804/1‑89 ACCGAGAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTTTGCTTTGGCTATT > 2:1407062/1‑91 ACCGAGAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTTTGCTTTGGCTATT > 1:913522/1‑91 ACCGAGAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTTTGCTTTGGCTATT > 1:3962538/1‑91 ACCGAGAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTTTGCTTTGGCTATT < 1:4258024/91‑1 CCGAGAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTTTTTTTGTTTTGGCTTTTT > 2:92931/1‑91 CCGAGAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTTTGCTTTGGCTATTT > 1:4558313/1‑91 CCGAGAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTTTGCTTTGGCTATTT > 2:92207/1‑91 CCGAGAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTTTGCTTTGGCTATTT > 1:1748812/1‑91 CCGAGAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTTTGCTTTGGCTATTT > 1:2914564/1‑91 CCGAGAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTTTGCTTTGGCTATTT > 2:225238/1‑91 CCGAGAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTCTGCTTTGGCTATTT > 1:4686420/1‑91 CGAGAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTTATCTTGATTATTTCGCCTTTTTTATTTTTCTTTTTGATTTGGCTATTTT > 2:3642028/1‑91 CGAGAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTTTGCTTTGGCTATTTT > 1:4196969/1‑91 CGAGAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTTTGCTTTGGCTATTTT > 1:493238/1‑91 CGAGAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTTTGCTTTGGCTATTTT > 1:3472509/1‑91 CGAGAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTTTGCTTTGGCTATTTT > 1:3472344/1‑91 CGAGAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTTTGCTTTGGCTATTTT > 1:2447702/1‑91 CGAGAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTTTGATTTGGCTATTTT > 2:3641683/1‑91 GAGAATCTCCATTTAAGGATTTCCTCTGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTTTGCTTTGGCTATTTTA < 2:2318551/91‑1 GAGAATCTCCATATAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTTTGCTTTGGCTATTTTA < 2:3738812/91‑1 AGAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTTTGCTTTGGCTATTTTAT > 1:4816496/1‑91 AGAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTTTGCTTTGGCTATTTTAT > 2:1097337/1‑91 GAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTTTGCTTTGGCTATTTTATA > 2:5591011/1‑91 GAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTTTGCTTTGGCTATTTTATA < 2:1581569/91‑1 GTAGATTAAAGAGTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/710434‑710532‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaccgagAATCTCCATTTAAGGATTTCCTCGGTTTTATTTTTGTCATCATGATTATTTCGCCTTTTTTATTTTTCTTTTTGCTTTGGCTATTTTATA < USA300TCH1516_ALE/710552‑710463 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |