| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 710532 | 299 (1.040) | 16 (0.060) | 11/142 | NT | 5.7% | intergenic (+25/+36) | tarA/tagH_1 | N‑acetylglucosaminyldiphosphoundecaprenol N‑acetyl‑beta‑D‑mannosaminyltransferase/Teichoic acids export ATP‑binding protein TagH |
| ? | USA300TCH1516_ALE | = 710552 | 264 (1.040) | intergenic (+45/+16) | tarA/tagH_1 | N‑acetylglucosaminyldiphosphoundecaprenol N‑acetyl‑beta‑D‑mannosaminyltransferase/Teichoic acids export ATP‑binding protein TagH | |||||
Only 100 of 442 total aligned reads displayed.
AAGAGTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCG > USA300TCH1516_ALE/710442‑710622 | gTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGaaa > 1:1363412/1‑91 (MQ=255) gTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGaaa > 1:3183237/1‑91 (MQ=255) gTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGaaa > 2:4702922/1‑91 (MQ=255) tATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAAt > 2:1186073/1‑91 (MQ=255) aTTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATc < 2:5023794/91‑1 (MQ=255) ttCCAATATTTATGTATAAAATAGCCAAAGTAAAAAGAAAAATAAAAAAGGCGAAATAAGCATGATGACAAAAAGAAAACCGTGGAAATcc < 2:2733987/91‑1 (MQ=255) ttCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATcc < 1:3138392/91‑1 (MQ=255) ccAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCtt > 2:492992/1‑91 (MQ=255) ccAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCtt > 2:5498044/1‑91 (MQ=255) cAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTa < 2:298269/91‑1 (MQ=255) tttATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATgg < 2:2646817/91‑1 (MQ=255) tttATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATgg < 1:1493768/91‑1 (MQ=255) tttATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATgg < 2:2969239/91‑1 (MQ=255) tttATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATgg < 1:2398706/91‑1 (MQ=255) tATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGaatctccatttaaggat < 1:4524713‑M1/91‑18 (MQ=255) aatGAATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGATAAAAATAAAACCGAGaatctccatttaaggat < 2:3843263‑M1/90‑18 (MQ=255) tGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGAt > 1:257405/1‑91 (MQ=255) tGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGAt < 1:5132079/91‑1 (MQ=255) aaaaTAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTctcg > 1:3472344‑M2/1‑87 (MQ=255) aaaTAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTctcgg > 2:92207‑M2/1‑86 (MQ=255) tAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTctcggttt > 1:5527531‑M2/1‑83 (MQ=255) tAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTctcggttt > 1:1628756‑M2/1‑83 (MQ=255) aGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGaatctccatttaaggatttcctcggtttt < 1:757401‑M1/91‑30 (MQ=255) gCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGttttt > 1:3817718/1‑91 (MQ=255) gCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGttttt > 1:990860/1‑91 (MQ=255) ccAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGATATTCTCGGtttttt > 1:1678601/1‑91 (MQ=255) ccAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGtttttt > 2:4334207/1‑91 (MQ=255) ccAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGtttttt > 2:4865544/1‑91 (MQ=255) ccAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGtttttt < 1:2239262/91‑1 (MQ=255) ccAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGtttttt > 2:3168359/1‑91 (MQ=255) ccAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGtttttt > 2:3993149/1‑91 (MQ=255) cAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTc > 1:2644410/1‑91 (MQ=255) cAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTc > 1:2085958/1‑91 (MQ=255) aaaGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCg > 2:4242946/1‑91 (MQ=255) aaaGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCg > 1:1009332/1‑91 (MQ=255) aaaGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCg < 1:1957521/91‑1 (MQ=255) aaGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCgg < 2:2255815/91‑1 (MQ=255) aaGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCgg < 1:4884352/91‑1 (MQ=255) aaGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCgg < 2:5312500/91‑1 (MQ=255) aGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGt < 2:5550474/91‑1 (MQ=255) cAAAAAGAAAAATAAAAAAGGCGAATTAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGttt < 1:585660/91‑1 (MQ=255) aaaaGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTctcggttttatttttgtca < 1:3440033‑M2/91‑20 (MQ=255) aaaaGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCTGtttat > 1:4696042/1‑91 (MQ=255) aaaGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGtttatt > 2:3517374/1‑91 (MQ=255) aaaGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGtttatt > 1:698623/1‑91 (MQ=255) aaGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGtttattt > 2:5579172/1‑91 (MQ=255) aGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGtttattta < 1:4937152/91‑1 (MQ=255) aaaaaTAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTtaat < 2:4738867/91‑1 (MQ=255) aaaaTAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGCAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTtaata > 1:2758587/1‑91 (MQ=255) aaaaTAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTtaata < 2:3361567/91‑1 (MQ=255) aaaaTAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTtaata < 2:5652820/91‑1 (MQ=255) aaaTAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTtaataa > 2:251072/1‑91 (MQ=255) aaTAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAAc < 2:3312287/91‑1 (MQ=255) aTAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACg > 1:1182814/1‑91 (MQ=255) aTAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACg > 2:3056396/1‑91 (MQ=255) aaaaaaGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGaa < 2:4412087/91‑1 (MQ=255) aaaaaaGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGaa < 2:5398420/91‑1 (MQ=255) aaaaGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGc > 1:124853/1‑91 (MQ=255) aaaGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCg > 1:651115/1‑91 (MQ=255) ggCGAAATAATCATGATGACAAAAATAAAACCGAGaatctccatttaaggatttcctcggttttatttttgtcatcatgattatttcgcct < 2:3151870‑M1/91‑57 (MQ=255) ggCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGa > 2:2338864/1‑91 (MQ=255) ggCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGa > 2:1538666/1‑91 (MQ=255) cGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACt > 1:2481068/1‑91 (MQ=255) gAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTc < 2:1794495/91‑1 (MQ=255) taataatCACGATGACACAAATAACACCGGGGAAATCCTTAAATGGATATTCTCGGTCGTTTCGGCTTATTTAATAACGAAGCGGGACTCa > 2:1655571/2‑91 (MQ=255) aaaTAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCa < 1:2690089/91‑1 (MQ=255) aataatCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCAt < 1:2933098/91‑1 (MQ=255) aaaaatCAAGATGACAAAAACAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTATTTCGGTTTATTTAATAACGAAGCGGGACTCAt < 2:2166818/88‑1 (MQ=255) taatCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAATGAAGCGGGACTCATCg < 1:1326916/91‑1 (MQ=255) tCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAgt < 2:2036949/91‑1 (MQ=255) cATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAgtt > 2:638295/1‑91 (MQ=255) atgatgACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAgttt > 2:1592491/1‑91 (MQ=255) gatgaCAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAgtttgt > 1:5065709/1‑91 (MQ=255) atgaCAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTTGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAgtttgtt < 1:5481837/91‑1 (MQ=255) atgaCAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAgtttgtt < 2:4061124/91‑1 (MQ=255) atgaCAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAgtttgtt < 1:4801453/91‑1 (MQ=255) gaCAAAAATAAAACCGAGGAAATCCTTAAATGGCGATTCTCGGTTTTTTCTGTTTCTTTAATAACTAATCTGGTCTCTTCGTgttcgtttt > 2:1928936/1‑90 (MQ=255) aCAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCt < 1:3510272/91‑1 (MQ=255) aaaaaaTAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTa < 2:2816639/90‑1 (MQ=255) aaaTAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTCTCTAAAt > 1:4478787/1‑91 (MQ=255) aaaaCCGAGaatctccatttaaggatttcctcggttttatttttgtcatcatgattatttcgccttttttatttttctttttgctttggct > 2:811924‑M1/1‑9 (MQ=255) aaaaCCGAGaatctccatttaaggatttcctcggttttatttttgtcatcatgattatttcgccttttttatttttctttttgctttggct < 2:750179‑M1/91‑83 (MQ=255) aaaaCCGAGaatctccatttaaggatttcctcggttttatttttgtcatcatgattatttcgccttttttatttttctttttgctttggct < 1:1063845‑M1/91‑83 (MQ=255) aCCGAGaatctccatttaaggatttcctcggttttatttttgtcatcatgattatttcgccttttttatttttctttttgctttggctatt > 2:1407062‑M1/1‑6 (MQ=255) aCCGAGaatctccatttaaggatttcctcggttttatttttgtcatcatgattatttcgccttttttatttttctttttgctttggctatt > 1:913522‑M1/1‑6 (MQ=255) aCCGAGaatctccatttaaggatttcctcggttttatttttgtcatcatgattatttcgccttttttatttttctttttgctttggctatt > 1:3962538‑M1/1‑6 (MQ=255) aCCGAGaatctccatttaaggatttcctcggttttatttttgtcatcatgattatttcgccttttttatttttctttttgctttggctatt < 1:4258024‑M1/91‑86 (MQ=255) aCCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCttttt > 1:5258743/1‑91 (MQ=255) aCCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCttttt > 1:4156581/1‑91 (MQ=255) ccGAGaatctccatttaaggatttcctcggttttatttttgtcatcatgattatttcgccttttttatttttctttttgctttggctattt > 1:2914564‑M1/1‑5 (MQ=255) ccGAGaatctccatttaaggatttcctcggttttatttttgtcatcatgattatttcgccttttttatttttctttttgctttggctattt > 1:4558313‑M1/1‑5 (MQ=255) ccGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTg < 1:3663650/91‑1 (MQ=255) cGAGaatctccatttaaggatttcctcggttttatttttgtcatcatgattatttcgccttttttatttttctttttgatttggctatttt > 2:3641683‑M1/1‑4 (MQ=255) cGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGTGACTCATCGAGTTTGTTTCTAAATTCTTTTTGt < 1:5608592/91‑1 (MQ=255) cGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGt > 1:1550799/1‑91 (MQ=255) cGAGGAAATCCTTAAATAGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGt > 1:4272706/1‑91 (MQ=255) gagaatctccatataaggatttcctcggttttatttttgtcatcatgattatttcgccttttttatttttctttttgctttggctatttta < 2:3738812‑M1/91‑89 (MQ=255) gAGGAAATCCTTAAATGGAGATTcccggttttatttttgtcttcatgattatttcgccttttttatttttctttttgctttggctatttta < 1:1750572‑M2/91‑69 (MQ=255) gAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGtt < 2:4558252/91‑1 (MQ=255) ggAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCg > 2:5132244/1‑91 (MQ=255) | AAGAGTATTCCAATATTTATGTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCG > USA300TCH1516_ALE/710442‑710622 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |