| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1120568 | 239 (0.830) | 15 (0.060) | 10/148 | NT | 6.1% | coding (56/276 nt) | USA300HOU_RS05550 | hypothetical protein |
| ? | USA300TCH1516_ALE | = 1120580 | 243 (0.920) | coding (68/276 nt) | USA300HOU_RS05550 | hypothetical protein | |||||
TTAGTAAGACTTGAGAATTTATATAGAGGGGGAGCGTGTCATGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1120473‑1120568‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agatgcAAGATTTCATCAGCATCTTTAGTCAATTGTTTCAAAGCTGCATTTTTCATTGTTGCTTGTTTCGCCATGACACGCTCCCCCTCTATATAA < USA300TCH1516_ALE/1120580‑1120491 TTAGTAAGACTTGAGAATTTATATAGAGGGGGAGCGTGTCATGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAA < 2:4955876/91‑1TTAGTAAGACTTGAGAATTTATATAGAGGGGGAGCGTGTCATGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAA > 1:2430926/1‑91 TAGTAAGACTTGAGAATTTATATAGAGGGGGAGCGTGTCATGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAG > 2:4956341/1‑91 TAGTAAGACTTGAGAATTTATATAGAGGGGGAGCGTGTCATGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAG > 2:3947097/1‑91 TAGTAAGACTTGAGAATTTATATAGAGGGGGAGCGTGTCATGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAG > 2:3261815/1‑91 TAGTAAGAATCGAGAATTAATATAGAGGGGGAGCGTATCATGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGAATAAAG > 2:2741287/1‑91 AGTAAGACTTGAGAATTTATATAGAGGGGGAGCGTGTCATGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGA > 1:5260510/1‑91 AGTAAGACTTGAGAATTTATATAGAGGGGGAGCGTGTCATGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGA > 2:4600793/1‑91 AGTAAGACTTGAGAATTTATATAGAGGGGGAGCGTGTCATGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGA > 1:2638040/1‑91 AGTAAGACTTGAGAATTTATATAGAGGGGGAGCGTGTCATGGCGAAACAAAAAAAAAAGAAAAATGCAGCTTTGAAACAATTGACTAAAGA < 2:1982479/91‑1 GTAAGACTTGAGAATTTATATAGAGGGGGAGCGTGTCATGGCGAATCAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGAa > 2:5452185/1‑90 GTAAGACTTGAGAATTTATATAGAGGGGGAGCGTGTCATGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGAT < 1:2181693/91‑1 GTAAGACTTGAGAATTTATATAGAGGGGGAGCGTGTCATGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGAT < 2:3039162/91‑1 GTAAGACTTGAGAATTTATATAGAGGGGGAGCGTGTCATGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGAT > 2:4310699/1‑91 TAAGACTTGAGAATTTATATAGAGGGGGAGCGTGTCATGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATG < 1:1255856/91‑1 AAGACTTGAGAATTTATATAGAGGGGGAGCGTGTCATGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGC > 2:319647/1‑91 AAGACTTGAGAATTTATATAGAGGGGGAGCGTGTCATGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGC > 1:949359/1‑91 AAGACTTGAGAATTTATATAGAGGGGGAGCGTGTCATGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGC > 1:5275397/1‑91 AAGACTTGAGAATTTATATAGAGGGGGAGCGTGTCATGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGC < 1:1159557/91‑1 AAGACTTGAGAATTTATATAGAGGGGGAGCGTGTCATGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGC > 1:5210515/1‑91 AAGACTTGAGAATTTATATAGAGGGGGAGCGTGTCATGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGC < 1:2711360/91‑1 GACTTGAGAATTTATATAGAGGGGGAGCGTGTCATGGCGACACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCAg > 1:403720/1‑90 AGAATTTATATAGAGGGGGAGCGTGTCATGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCAAGATTTC < 2:854844/91‑1 AATTTATATAGAGGGGGAGCGTGTCATGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCAAGATTTCAT < 1:4642271/91‑1 AATTTATATAGAGGGGGAGCGTGTCATGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCAAGATTTCAT < 2:1606321/91‑1 TTTATATAGAGGGGGAGCGTGTCATGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCAAGATTTCATCA < 2:3593880/91‑1 TTTATATAGAGGGGGAGCGTGTCATGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCAAGATTTCATCA < 2:3411455/91‑1 TTTATATAGAGGGGGAGCGTGTCATGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCAAGATTTCATCA < 1:1484872/91‑1 TTATATAGAGGGGGAGCGTGTCATGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCAAGATTTCATCAG < 1:5223435/91‑1 TTATATAGAGGGGGAGCGTGTCATGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCAAGATTTCATCAG < 2:157419/91‑1 TATATAGAGGGGGAGCGTGTCATGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCAAGATTTCATCAGC < 1:4223454/91‑1 TATATAGAGGGGGAGCGTGTCATGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCAAGATTTCATCAGC < 1:2200555/91‑1 ATATAGAGGGGGAGCGTGTCATGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCAAGATTTCATCAGCA < 1:1806781/91‑1 AGAGGGGGAGCGTGTCATGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCAAGATTTCATCAGCATCTT < 1:1871793/91‑1 GAGGGGGAGCGTGTCATGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCAAGATTTCATCAGCATCTTT < 1:4455809/91‑1 GGGGAGCGTGTCATGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCAAGATTTCATCAGCATCTTTAGT < 1:1001349/91‑1 AGCGTGTCATGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCAAGATTTCATCAGCATCTTTAGTCAAT < 1:3543457/91‑1 AGATGCAAGATTTCATCAGCATCTTTAGTCAATTGTTTCAAAGCTGCATTTTTCATTGTTGCTTGTTTCGCCATGACACGCTCCCCCTCTA > 1:2883480/1‑91 AGATGCAAGATTTCATCAGCATCTTTAGTCAATTGTTTCAAAGCTGCATTTTTCATTGTTGCTTGTTTCGCCATGACACGCTCCCCCTCTA > 1:2881761/1‑91 GATGCAAGATTTCATCGGCATCTTTAGTCAATTGTTTCAAAGCTGCATTTTTCATTGTTGCTTGTATCGCCATGACACGCTCCCCCTCTAT < 2:5376605/91‑1 GATGCAAGATTTCATCAGCATCTTTAGTCAATTGTTTCAAAGCTGCATTTTTCATTGTTGCTTGTTTCGCCATGACACGCTCCCCCTCTAT > 1:2742076/1‑91 ATGCAAGATTTCATCAGCATCTTTAGTCAATTGTTTCAAAGCTGCATTTTTCATTGTTGCTTGTTTCGCCATGACACGCTCCCCCTCTATA < 1:1169474/91‑1 ATGCAAGATTTCATCAGCATCTTTAGTCAATTGTTTCAAAGCTGCATTTTTCATTGTTGCTTGTTTCGCCATGACACGCTCCCCCTCTATA > 2:900162/1‑91 ATGCAAGATTTCATCAGCATCTTTAGTCAATTGTTTCAAAGCTGCATTTTTCATTGTTGCTTGTTTCGCCATGACACGCTCCCCCTCTATA < 2:4224611/91‑1 ATGCAAGATTTCATCAGCATCTTTAGTCAATTGTTTCAAAGCTGCATTTTTCATTGTTGCTTGTTTCGCCATGACACGCTCCCCCTCTATA < 2:3779994/91‑1 ATGCAAGATTTCATCAGCATCTTTAGTCAATTGTTTCAAAGCTGCATTTTTCATTGTTGCTTGTTTCGCCATGACACGCTCCCCCTCTATA < 2:266520/91‑1 ATGCAAGATTTCATCAGCATCTTTAGTCAATTGTTTCAAAGCTGCATTTTTCATTGTTGCTTGTTTCGCCATGACACGCTCCCCCTCTATA < 1:915072/91‑1 ATGCAAGATTTCATCAGCATCTTTAGTCAATTGTTTCAAAGCTGCATTTTTCATTGTTGCTTGTTTCGCCATGACACGCTCCCCCTCTATA > 1:593659/1‑91 ATGCAAGATTTCATCAGCATCTTTAGTCAATTGTTTCAAAGCTGCATTTTTCATTGTTGCTTGTTTCGCCATGACACGCTCCCCCTCTATA < 1:4425554/91‑1 TGCAAGATTTCATCAGCATCTTTAGTCAATTGTTTCAAAGCTGCATTTTTCATTGTTGCTTGTTTCGCCATGACACGCTCCCCCTCTATAT > 2:2533075/1‑91 GCAAGATTTCATCAGCATCTTTAGTCAATTGTTTCAAAGCTGCATTTTTCATAGTTGCTTGTTTCGCCATGACACGCTCCCCCTCTATATA < 1:5424422/91‑1 CAAGATTTCATCAGCATCTTTAGTCAATTGTTTCAAAGCTGCATTTTTCATTGTTGCTTGTTTCGCCATGACACGCTCCCCCTCTATATAA < 1:1991653/91‑1 CAAGATTTCATCAGCATCTTTAGTCAATTGTTTCAAAGCTGCATTTTTCATTGTTGCTTGTTTCGCCATGACACGCTCCCCCTCTATATAA < 1:4497352/91‑1 TTAGTAAGACTTGAGAATTTATATAGAGGGGGAGCGTGTCATGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1120473‑1120568‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agatgcAAGATTTCATCAGCATCTTTAGTCAATTGTTTCAAAGCTGCATTTTTCATTGTTGCTTGTTTCGCCATGACACGCTCCCCCTCTATATAA < USA300TCH1516_ALE/1120580‑1120491 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |