BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1120568	239 (0.830)	15 (0.060)	10/148	NT	6.1%	coding (56/276 nt)	USA300HOU_RS05550	hypothetical protein
*	?	USA300TCH1516_ALE	= 1120580	243 (0.920)	15 (0.060)	10/148	NT	6.1%	coding (68/276 nt)	USA300HOU_RS05550	hypothetical protein

Only 100 of 313 total aligned reads displayed.

TTTATATAGAGGGGGAGCGTGTCATGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTAACATTACCTTCATGCCCATTATATGAAGAAGTACTAGATACACAAATGTTTGGACTTCA  >  USA300TCH1516_ALE/1120490‑1120670

tttATATAGAGGGGGAGCGTGTCATGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCtt                                                                                            >  2:2776318/1‑91 (MQ=255)

  tatataGAGGGGGAGCGTGTCATGGCGAAACAAGCAACTATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTgc                                                                                          <  1:5424422‑M2/91‑3 (MQ=255)

    tataGAGGGGGAGCGTGTCATGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTgcat                                                                                        >  2:900162‑M2/1‑87 (MQ=255)

    tataGAGGGGGAGCGTGTCATGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTgcat                                                                                        <  2:4224611‑M2/91‑5 (MQ=255)

    tataGAGGGGGAGCGTGTCATGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTgcat                                                                                        <  1:915072‑M2/91‑5 (MQ=255)

     ataGAGGGGGAGCGTGTCATGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTgcatc                                                                                       >  1:2742076‑M2/1‑86 (MQ=255)

       agagGGGGAGCGTGTCATGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGTAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTg                                                                                     >  1:4660784/1‑91 (MQ=255)

       agagGGGGAGCGTGTCATGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTg                                                                                     >  2:1859755/1‑91 (MQ=255)

       agagGGGGAGCGTGTCATGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTg                                                                                     <  1:253077/91‑1 (MQ=255)

         agGGGGAGCGTGTCATGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGAt                                                                                   <  1:1423795/91‑1 (MQ=255)

          gggggAGCGTGTCATGGGGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGAtt                                                                                  <  2:734980/91‑1 (MQ=255)

          gggggAGCGTGTCATGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGAtt                                                                                  >  1:4789872/1‑91 (MQ=255)

           ggggAGCGTGTCATGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGATTa                                                                                 >  2:5267116/1‑91 (MQ=255)

             ggAGCGTGTCATGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGATTaaa                                                                               >  1:3682150/1‑91 (MQ=255)

                gCGTGTCATGGCGAAACAAGCAACAATGAAACATGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGtt                                                                            >  1:5527473/1‑91 (MQ=255)

                gCGTGTCATGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTTCATCAGTTTAAAGtt                                                                            >  2:1549818/1‑91 (MQ=255)

                gCGTGTCATGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGtt                                                                            >  1:2440071/1‑91 (MQ=255)

                gCGTGTCATGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGtt                                                                            >  1:66225/1‑91 (MQ=255)

                 cGTGTCATGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTc                                                                           >  1:4874252/1‑91 (MQ=255)

                  gtgtCATGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCa                                                                          >  2:4893154/1‑91 (MQ=255)

                    gtCATGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAGAGATGCTGATGAACTCTTGCATCGGATTAACGTCCaaa                                                                        >  2:5095692/1‑90 (MQ=255)

                    gtCATGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAAc                                                                        >  2:3530227/1‑91 (MQ=255)

                    gtCATGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAAc                                                                        >  2:5296594/1‑91 (MQ=255)

                    gtCATGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAAc                                                                        <  2:1035626/91‑1 (MQ=255)

                    gtCATGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAAc                                                                        <  1:1271097/91‑1 (MQ=255)

                     tCATGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACt                                                                       >  1:1058253/1‑91 (MQ=255)

                     tCATGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACt                                                                       <  1:2685020/91‑1 (MQ=255)

                       aTGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAg                                                                     >  2:702121/1‑91 (MQ=255)

                       aTGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAg                                                                     <  2:4368376/91‑1 (MQ=255)

                       aTGGCGAAACAAAAAAAAAAGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAg                                                                     <  2:2248352/91‑1 (MQ=255)

                          gCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATa                                                                  >  1:874450/1‑91 (MQ=255)

                           cGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAGTCTTGCATCTGATTAAAGTTCAACTAGATaa                                                                 <  1:5507456/91‑1 (MQ=255)

                              aaCAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAAttt                                                              >  2:4515969/1‑91 (MQ=255)

                              aaCAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAAttt                                                              >  1:3129824/1‑91 (MQ=255)

                              aaCAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAAttt                                                              >  2:1696912/1‑91 (MQ=255)

                               aCAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTa                                                             >  1:4066941/1‑91 (MQ=255)

                                cAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAACGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTaa                                                            >  2:5234148/1‑91 (MQ=255)

                                cAAGCAACAATGAAAAATGCAGCTTTGAAACAATAGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAAttaat                                                            <  2:4602061/91‑4 (MQ=255)

                                 aaGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTAAc                                                           <  1:3918847/91‑1 (MQ=255)

                                 aaGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTAAc                                                           >  2:1899162/1‑91 (MQ=255)

                                 aaGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTAAc                                                           >  2:1630026/1‑91 (MQ=255)

                                 aaGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTAAc                                                           <  1:598535/91‑1 (MQ=255)

                                  aGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTAACa                                                          >  1:4507213/1‑91 (MQ=255)

                                  aGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTAACa                                                          >  1:2883918/1‑91 (MQ=255)

                                     aacaaTGAAAAATGCAGCTTTGAAACAATTTACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTAACATTa                                                       <  2:5590315/91‑1 (MQ=255)

                                     aacaaTGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTAACATTa                                                       >  2:3961090/1‑91 (MQ=255)

                                     aacaaTGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTAACATTa                                                       >  1:5024461/1‑91 (MQ=255)

                                       caaTGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTAACATTAcc                                                     >  2:5334815/1‑91 (MQ=255)

                                       caaTGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTAACATTAcc                                                     <  2:3814593/91‑1 (MQ=255)

                                        aaTGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTAACATTACCt                                                    >  2:2999518/1‑91 (MQ=255)

                                           gAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTAACATTACCTTCa                                                 <  1:3371901/91‑1 (MQ=255)

                                             aaaaTGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTAAGATTACCTTCATg                                               >  2:3626328/1‑91 (MQ=255)

                                             aaaaTGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTAACATTACCTTCATg                                               >  1:2804389/1‑91 (MQ=255)

                                               aaTGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTAACATTACCTTCATGcc                                             >  1:2011498/1‑91 (MQ=255)

                                                aTGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTAACATTACCTTCATGccc                                            >  2:3593651/1‑91 (MQ=255)

                                                aTGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTAACATTACCTTCATGccc                                            <  2:2082875/91‑1 (MQ=255)

                                                    aGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTAACATTACCTTCATGCCCATta                                        <  1:5093255/91‑1 (MQ=255)

                                                    aGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTAACATTACCTTCATGCCCATta                                        <  1:4132417/91‑1 (MQ=255)

                                                    aGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTAACATTACCTTCATGCCCATta                                        >  2:246750/1‑91 (MQ=255)

                                                     gCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTAACATTACCTTCATGCCCATtat                                       >  1:1916383/1‑91 (MQ=255)

                                                      cTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTAACATTACCTTCATGCCCATtata                                      >  1:2112341/1‑91 (MQ=255)

                                                         tGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTAACATTACCTTCATGCCCATTATATga                                   <  2:790513/91‑1 (MQ=255)

                                                         tGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTAACATTACCTTCATGCCCATTATATga                                   <  1:331637/91‑1 (MQ=255)

                                                           aaaCAATTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTAACATTACCTTCATGCCCATTATATgaag                                 >  2:5392623/1‑91 (MQ=255)

                                                           aaaCAATTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTAACATTACCTTCATGCCCATTATATgaag                                 >  2:4989112/1‑91 (MQ=255)

                                                           aaaCAATTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTAACATTACCTTCATGCCCATTATATgaag                                 <  2:1235573/91‑1 (MQ=255)

                                                             aCAATTGACTAAAGATGCAGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTAACATTACCTTCATGCCCATTATATgaagaa                               <  1:5540815/91‑1 (MQ=255)

                                                               aaTTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTAACATTACCTTCATGCCCATTATATGAAGAAGt                             <  1:1536467/91‑1 (MQ=255)

                                                               aaTTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTAACATTACCTTCATGCCCATTATATGAAGAAGt                             <  2:4870254/91‑1 (MQ=255)

                                                               aaTTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTAACATTACCTTCATGCCCATTATATGAAGAAGt                             <  2:4680856/91‑1 (MQ=255)

                                                                aTTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTAACATTACCTTCATGCCCATTGTATGAAGAAGTa                            >  2:3652598/1‑91 (MQ=255)

                                                                aTTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTAACATTACCTTCATGCCCATTATATGAAGAAGTa                            <  1:5222570/91‑1 (MQ=255)

                                                                 ttGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTAACATTACCTTCATGCCCATTATATGAAGAAGTAc                           <  2:213481/91‑1 (MQ=255)

                                                                 ttGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTAACATTACCTTCATGCCCATTATATGAAGAAGTAc                           >  1:181375/1‑91 (MQ=255)

                                                                  tGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTAACATTACCTTCATGCCCATTATATGAAGAAGTACt                          >  1:778888/1‑91 (MQ=255)

                                                                    aCTAAAGATGCTGATGAAATCTTgcatctttagtcaattgtttcaaagctgcatttttcattgttgcttgtttcgccatgacacgctcccc                        <  1:1001349‑M2/91‑69 (MQ=255)

                                                                     cTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTAACATTACCTTCATGCCCATTATATGAAGAAGTACTAGa                       >  1:2481089/1‑91 (MQ=255)

                                                                         aGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTAACATTACCTTCATGCCCATTATATGAAGAAGTACTAGATaca                   <  2:20228/91‑1 (MQ=255)

                                                                          gATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTAACATTACCTTCATGCCCATTATATGAAGAAGTACTAGATacac                  >  2:863079/1‑91 (MQ=255)

                                                                          gATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTAACATTACCTTCATGCCCATTATATGAAGAAGTACTAGATacac                  <  1:3059759/91‑1 (MQ=255)

                                                                          gATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTAACATTACCTTCATGCCCATTATATGAAGAAGTACTAGATacac                  <  2:2532071/91‑1 (MQ=255)

                                                                          gATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTAACATTACCTTCATGCCCATTATATGAAGAAGTACTAGATacac                  <  1:1717643/91‑1 (MQ=255)

                                                                          gATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTAACATTACCTTCATGCCCATTATATGAAGAAGTACTAGATacac                  <  2:2928407/91‑1 (MQ=255)

                                                                           aTGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTAACATTACCTTCATGCCCATTATATGAAGAAGTACTAGATAcaca                 >  2:400532/1‑91 (MQ=255)

                                                                            tGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTAACATTACCTTCATGCCCATTATATGAAGAAGTACTAGATACACaa                <  1:4310699/91‑1 (MQ=255)

                                                                             gCTGATGAAATCTTgcatctttagtcaattgtttcaaagctgcatttttcattgttgcttgtttcgccatgacacgctccccctctatata               <  1:4223454‑M2/91‑78 (MQ=255)

                                                                             gCTGATGAAATCTTgcatctttagtcaattgtttcaaagctgcatttttcattgttgcttgtttcgccatgacacgctccccctctatata               <  1:2200555‑M2/91‑78 (MQ=255)

                                                                             gCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTACCATTACCTTCATGCCCATTATATGAAGAACTACTAGATACACaaa               >  2:5536811/1‑91 (MQ=255)

                                                                             gCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTAACATTACCTTCATGCCCATTATATGAAGAAGTACTAGATACACaaa               >  2:2654040/1‑91 (MQ=255)

                                                                               tgatgaAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTAACATTACCTTCATGCCCATTATATGAAGAAGTACTAGATACACAAATg             <  1:4600793/91‑1 (MQ=255)

                                                                                   gaAATCTTgcatctttagtcaattgtttcaaagctgcatttttcattgttgcttgtttcgccatgacacgctccccctctatataaattct         <  2:854844‑M2/91‑84 (MQ=255)

                                                                                    aaaTCTTGCATCTGATTAAAGTTCGACTAGATAATTTAACATTACCTTCATGCCCATTATATGAAGAAGTACTAGATACACAAATGTTTgg        <  1:5343081/91‑1 (MQ=255)

                                                                                        cTTGCATCTGATTAAAGTTCAACTAGATAATTTAACATTACCTTCATGCCCATTATATGAAGAAGTACTAGATACACAAATGTTTGGACtt    <  2:3153765/91‑1 (MQ=255)

                                                                                        cTTGCATCTGATTAAAGTTCAACTAGATAATTTAACATTACCTTCATGCCCATTATATGAAGAAGTACTAGATACACAAATGTTTGGACtt    >  1:1578408/1‑91 (MQ=255)

                                                                                        cTTGCATCTGATTAAAGTTCAACTAGATAATTTAACATTACCTTCATGCCCATTATATGAAGAAGTACTAGATACACAAATGTTTGGACtt    <  2:1423748/91‑1 (MQ=255)

                                                                                        cTTGCATCTGATTAAAGTTCAACTAGATAATTTAACATTACCTTCATGCCCATTATATGAAGAAGTACTAGATACACAAATGTTTGGACtt    <  1:285605/91‑1 (MQ=255)

                                                                                         ttGCATCTGATTAAAGTTCAACTAGATAATTTAACATTACCTTCATGCCCATTATATGAAGAAGTACTAGATACACAAATGt            >  1:44562/1‑82 (MQ=255)

                                                                                         ttGCATCTGATTAAAGTTCAACTAGATAATTTAACATTACCTTCATGCCCATTATATGAAGAAGTACTAGATACACAAATGt            <  2:44562/82‑1 (MQ=255)

                                                                                         ttGCATCTGATTAAAGTTCAACTAGATAATTTAACATTACCTTCATGCCCATTATATGAAGAAGTACTAGATACACAAATGTTTGGACTTc   >  2:3199174/1‑91 (MQ=255)

                                                                                         ctgcatctttagtcaattgtttcaaagctgcatttttcattgttgcttgtgtcgccatgacacgctccccctctatataaattctcaagtc   >  1:403720‑M2/2‑2 (MQ=255)

TTTATATAGAGGGGGAGCGTGTCATGGCGAAACAAGCAACAATGAAAAATGCAGCTTTGAAACAATTGACTAAAGATGCTGATGAAATCTTGCATCTGATTAAAGTTCAACTAGATAATTTAACATTACCTTCATGCCCATTATATGAAGAAGTACTAGATACACAAATGTTTGGACTTCA  >  USA300TCH1516_ALE/1120490‑1120670

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.