| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2031786 | 266 (0.930) | 12 (0.060) +GCCGGCAAGGTTGACTAGAATT |
6/116 | NT | 5.8% | intergenic (+252/+238) | USA300HOU_RS10250/USA300HOU_RS10255 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | = 2866873 | 272 (0.950) | intergenic (‑272/+181) | USA300HOU_RS14695/noc_2 | hypothetical protein/Nucleoid occlusion protein | |||||
CCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2031724‑2031786‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTA < USA300TCH1516_ALE/2866873‑2866839 |||||||||||||||||||||| gtCACACCCCAACTTGCAGTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACAAGAATAAAAAAa < 2:4862917/89‑2 AACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAATTCGCTTGTAA < 2:15209/91‑1 CTTGCATTGTCTGTAGAAATTGGCGTTCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAATGCGCTTGTAACA < 1:1604298/91‑1 TTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAATGCGCTTGTAACAAGCTTT < 1:1947972/91‑1 GTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAATGCGCTTGTAACAAGCTTTTT < 2:3381940/91‑1 GTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAATGCGCTTGTAACAAGCTTTTT < 2:532170/91‑1 TCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAATTCGCTTGTAACAAGCTTTTTT < 1:2807453/91‑1 TCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAATTCGCTTGTAACAAGCTTTTTT < 1:2808043/91‑1 TCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAATGCGCTTGTAACAAGCTTTTTT < 1:567470/91‑1 tggAGAAATGGGGAATCCAATTGCTCTTTGTTGGGGGCCCGCCGGCAAGGTTGACTAGAATTGAAAATGCGCTTGTAACAAGCTTTTTTCA < 2:747748/88‑1 TGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACT‑GAA‑CGAAAATGCGCTTGTAACAAGCTTTTTTCAAT < 1:3086646/91‑1 GTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACT‑GAA‑CGAAAATGCGCTTGTAACAAGCTTTTTTCAATT < 2:5007826/91‑1 GAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAAGGTTGACT‑GAA‑CGAAAATTCGCTTGTAACAAGCTTTTTTCAATTCTA < 1:2803372/91‑1 |||||||||||||||||||||| CCCACACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2031724‑2031786‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTA < USA300TCH1516_ALE/2866873‑2866839 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |