| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2031786 | 266 (0.930) | 12 (0.060) +GCCGGCAAGGTTGACTAGAATT |
6/116 | NT | 5.8% | intergenic (+252/+238) | USA300HOU_RS10250/USA300HOU_RS10255 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | = 2866873 | 272 (0.950) | intergenic (‑272/+181) | USA300HOU_RS14695/noc_2 | hypothetical protein/Nucleoid occlusion protein | |||||
Only 100 of 318 total aligned reads displayed.
CAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTAT > USA300TCH1516_ALE/2866784‑2866963 | cAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCg < 2:1357719/91‑1 (MQ=255) aGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGt < 1:4531326/91‑1 (MQ=255) attGATATTTTCGCAAAATTTATTTCGTCATACCACCCCAGCAAGGTTGACTAGAATTCAAAAACGCTTGTTACATGCGCATTTACGTCCa > 1:4717549/3‑91 (MQ=14) aaTGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTcg > 1:5288397/1‑90 (MQ=255) aaTGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCa > 1:1697135/1‑91 (MQ=255) aaTGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCa > 2:112801/1‑91 (MQ=255) aaTGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCa < 1:3133217/91‑1 (MQ=255) tGATATTTTCGCAAAATTTATTTCGTCGTCCCATCCCAGCAAGGTTGACAAGAATTGGAAAAAGCTTGTTAGAAGCGCATTTTCGTTCAGt < 2:5243353/91‑1 (MQ=14) tGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGt > 1:3753883/1‑91 (MQ=255) gATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTc < 2:4798448/91‑1 (MQ=255) gATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTc > 1:4887830/1‑91 (MQ=255) gATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTc < 1:3324407/91‑1 (MQ=255) gATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTc > 1:2103332/1‑91 (MQ=255) gATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTc < 1:1607074/91‑1 (MQ=255) atatTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCa > 1:4936492/1‑91 (MQ=255) atatTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCa > 1:2920722/1‑91 (MQ=255) tatTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTCCAAGTGCATTTTCGTTCAGTCaa > 1:5379144/1‑91 (MQ=255) ttttCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAact < 2:3646941/91‑1 (MQ=255) tCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAactact < 1:2551168/91‑1 (MQ=255) cAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGcc < 2:3992131/91‑1 (MQ=40) aaaTTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCaa < 1:2213498/91‑1 (MQ=40) aaaTTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCaa < 2:4653249/91‑1 (MQ=39) aaTTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAat > 2:4080975/1‑91 (MQ=255) aaTTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAat > 2:2717729/1‑91 (MQ=255) ttatttCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAAtata < 1:1289414/91‑1 (MQ=255) tatttCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATaa < 2:5014317/91‑1 (MQ=255) atttCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAAc < 2:2925009/91‑1 (MQ=255) tttCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACt < 2:5514430/91‑1 (MQ=255) tttCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACt > 1:4182247/1‑91 (MQ=255) tttCGTCGTCCCACCCCAGCAAGGTTGACTAGAAATGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACt < 1:440647/91‑1 (MQ=255) ttCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACtt > 1:2056661/1‑91 (MQ=255) cgtcgtCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCg > 2:4828534/1‑91 (MQ=255) tcgtcCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTa < 1:5645263/91‑1 (MQ=255) tcgtcCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTa > 2:1960972/1‑91 (MQ=255) cgtcCCACCCCAGCACGGTTGACTAGAATTGAAAAAAGCTTGCTACAAGCGCATTTTCGTTCAGCCAACTACTGCCAATATAACTTCGCag > 2:3087056/1‑91 (MQ=14) cgtcCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGGTCAGTCAACTACTGCCAATATAACTTCGTag < 1:5527741/91‑1 (MQ=255) gtcCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTaga < 2:588170/91‑1 (MQ=255) tcCCACCCCAGCAAGGATGACTAGAATTGAAAAAAGCTTGTTACAAGCGTATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTagag < 1:5593947/91‑1 (MQ=255) cccACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGc < 1:3227066/91‑1 (MQ=255) ccACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCa > 1:4797069/1‑91 (MQ=255) aCCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATa < 1:970639/91‑1 (MQ=255) aCCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATa > 2:4982262/1‑91 (MQ=255) ccccAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAg < 1:1973711/91‑1 (MQ=255) cccAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGa > 2:1225685/1‑91 (MQ=255) cccAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGAAGAGCATAGa > 2:4498932/1‑91 (MQ=255) ccAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGAGCACTTTCGTTCAGGCAACTACTGCTAAGATAACTTCGTAGAGCATAGaa < 2:2844471/91‑1 (MQ=14) aGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACa > 1:777939/1‑91 (MQ=39) aGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACa < 1:676487/91‑1 (MQ=39) aGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACa < 1:1784405/91‑1 (MQ=39) aGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACa < 2:1519760/91‑1 (MQ=39) cAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACAtt > 2:3767412/1‑91 (MQ=37) gTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGAtt > 2:4700511/1‑91 (MQ=32) gTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGAtt > 1:3817967/1‑91 (MQ=32) aGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTAc < 1:3949563/91‑1 (MQ=32) aTTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAg < 2:2395595/91‑1 (MQ=34) aTTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAg > 2:4167227/1‑91 (MQ=34) ttGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGc < 2:1697135/91‑1 (MQ=34) ttGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGc < 2:5607632/91‑1 (MQ=34) ttGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGc < 2:4187969/91‑1 (MQ=34) tGAAAAAAGCTTGTTACAAGCGCATTTTCaattctagtcaaccttgccggcgggcccccaacaaagagcaattggattccccatttctcca < 2:747748‑M2/91‑63 (MQ=255) tGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGcc < 1:3556240/91‑1 (MQ=34) tGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGcc > 2:3404163/1‑91 (MQ=33) gAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCt > 1:2587395/1‑91 (MQ=34) aaaaaaGCTTGTTACAAGCGAATTTTCaattctagtcaaccttgccggcggggccccaacaaagagaaattggattcccaatttctacaga < 1:2808043‑M2/91‑65 (MQ=255) aaaaaGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGa < 2:2070748/91‑1 (MQ=34) aaaaaGCTTGTTACAAGAGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGa > 1:5473430/1‑91 (MQ=21) aaaGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATc > 2:2595947/1‑91 (MQ=34) aaaGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATc < 1:3436917/91‑1 (MQ=34) aaGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCa < 2:2477935/91‑1 (MQ=33) aGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCaa < 1:1410015/91‑1 (MQ=35) gCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAAc > 1:1250143/1‑91 (MQ=37) gCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAAc > 2:2637666/1‑91 (MQ=37) ttGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACat > 2:1045171/1‑91 (MQ=39) tGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACata > 1:4571153/1‑91 (MQ=38) tGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACata > 2:574285/1‑91 (MQ=40) tGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACata > 2:3553321/1‑91 (MQ=39) tGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTAATCAACatt > 2:5352104/1‑90 (MQ=255) gTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACatat > 1:1095879/1‑91 (MQ=255) cAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACatctaaat < 2:2270842/91‑1 (MQ=255) aaGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACatataaata < 2:653590/91‑1 (MQ=255) aaGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACatataaata < 2:1908998/91‑1 (MQ=255) aaGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACatataaata < 2:3190398/91‑1 (MQ=255) aaGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACatataaata < 2:3030942/91‑1 (MQ=255) aGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACatataaatat < 1:301653/91‑1 (MQ=255) aGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACatataaatat < 2:1634669/91‑1 (MQ=255) cgcATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACatataaata < 1:4818706/88‑1 (MQ=255) gcATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACAtataaatataaa > 1:5091785/1‑91 (MQ=255) tttttttattcttgtcaaccttgccggcggggccccaacaaagagaaattggattcccaatttctacagacactgcaagttggggtgtgac < 2:4862917‑M2/90‑86 (MQ=255) aTTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAAtt < 1:2717729/91‑1 (MQ=255) aTTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAAtt < 1:890485/91‑1 (MQ=255) ttttCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAAttt > 2:1413450/1‑91 (MQ=255) ttttCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAAttt < 2:1785804/91‑1 (MQ=255) tttCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAAtttt > 1:1744818/1‑91 (MQ=255) tttCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAAtttt < 1:4216598/91‑1 (MQ=255) ttCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAAttttt > 2:4939387/1‑91 (MQ=255) ttCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAAttttt > 1:1928416/1‑91 (MQ=255) ttCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAAttttt < 2:1951640/91‑1 (MQ=255) ttCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAAttttt > 1:1183777/1‑91 (MQ=255) ttCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAAttttt > 2:3459998/1‑91 (MQ=255) cGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTAt < 2:448182/91‑1 (MQ=255) | CAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTAT > USA300TCH1516_ALE/2866784‑2866963 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |