| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2555354 | 249 (0.870) | 19 (0.070) | 6/142 | NT | 7.8% | intergenic (‑325/+544) | irtA/yfdG | Iron import ATP‑binding/permease protein IrtA/Prophage bactoprenol‑linked glucose translocase |
| ? | USA300TCH1516_ALE | = 2555358 | 231 (0.910) | intergenic (‑329/+540) | irtA/yfdG | Iron import ATP‑binding/permease protein IrtA/Prophage bactoprenol‑linked glucose translocase | |||||
ATTTATTATGTAGTGGTTCTGGGAGTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATT‑GG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2555257‑2555354‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agaaatt‑ggATTCCCAATTTCTAGAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGTGAAAATATCATTTCTGTCCCACTCCCAGAACCA < USA300TCH1516_ALE/2555358‑2555270 atgTATTATGTAGTGGTTCTGGGAGTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAG < 2:5262585/88‑1ATTTATTATGTAGTGGTTCTGGGAGTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAG > 1:1294151/1‑91ATTTATTATGTAGTGGTTCTGGGAGTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAG > 1:5080507/1‑91ATTTATTATGTAGTGGTTCTGGGAGTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAG < 1:794791/91‑1ATTTATTATGTAGTGGTTCTGGGAGTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAG < 1:2205431/91‑1ATTTATTATGTAGTGGTTCTGGGAGTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAG > 2:2374246/1‑91ATTTATTATGTAGTGGTTCTGGGAGTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAG > 2:3834517/1‑91ATTTATTATGTAGTGGTTCTGGGAGTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAG < 2:4713049/91‑1ATTTATTATGTAGTGGTTCTGGGAGTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTCTCTCTAG > 1:4483885/1‑91 TTTATTATGTAGTGGTTCTGGGAGTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGA > 2:2846922/1‑91 TTTATTATGTAGTGGTTCTGGGAGTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGA > 1:2178051/1‑91 TTATTATGTAGTGGTTCTGGGAGTGGGACAGAAATGATATTTTCACAGAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAA > 1:1989526/1‑91 TTATTATGTAGTGGTTCTGGGAGTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAA > 2:3694063/1‑91 TTATTATGTAGTGGTTCTGGGAGTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAA < 1:1360723/91‑1 TTATTATGTAGTGGTTCTGGGAGTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAA < 1:1360213/91‑1 TTATTATGTAGTGGTTCTGGGAGTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAA > 1:2533057/1‑91 TATTATGTAGTGGTTCTGGGAGTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAA > 2:899625/1‑91 ATTATGTAGTGGTTCTGGGAGTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAAT > 2:424834/1‑91 ATTATGTAGTGGTTCTGGGAGTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAAT < 2:2140081/91‑1 ATTATGTAGTGGTTCTGGGAGTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAAT > 2:1850397/1‑91 ATTATGTAGTGGTTCTGGGAGTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAAT < 2:958089/91‑1 ATTATGTAGTGGTTCTGGGAGTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAAT < 1:3490058/91‑1 ATTATGTAGTGGTTCTGGGAGTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAAT < 1:2673353/91‑1 TTATGTAGTGGTTCTGGGAGTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATT > 1:3051510/1‑91 TATGTAGTGGTTCTGGGAGTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATT‑G < 1:4126276/91‑1 TATGTAGTGGTTCTGGGAGTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATT‑G > 1:4647643/1‑91 TATGTAGTGGTTCTGGGAGTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATT‑G < 1:367841/91‑1 TATGTAGTGGTTCTGGGAGTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATT‑G < 2:11331/91‑1 ATGTAGTGGTTCTGGGAGTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATT‑GG < 1:39360/91‑1 ATGTAGTGGTTCTGGGAGTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATT‑GG < 1:5066081/91‑1 ATGTAGTGGTTCTGGGAGTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATT‑GG < 2:569904/91‑1 ATGTAGTGGTTCTGGGAGTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATT‑GG < 1:876333/91‑1 GTAGTGGTTCTGGGAGTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATT‑GGAT < 1:2258284/91‑1 GTAGTGGTTCTGGGAGCGGGACAGACTTGATATTTTCACAAAATTTATTCCGTCGTCCCACCCCAACTTGCATTGTCTCTCGAATTT‑GGcg > 2:1161090/1‑89 TAGTGGTTCTGGGGGTGGGACAGAAATGATATTTTCACAAAATTTGTTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATT‑GGATT < 2:2645486/91‑1 TAGTGGTTCTGGGAGTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATT‑GGATT < 1:2831961/91‑1 TAGTGGTTCTGGGAGTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATT‑GGATT < 1:2432665/91‑1 AGTGGTTCTGGGAGTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATT‑GGATTC < 1:3437809/91‑1 AGTGGTTCTGGGAGTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATT‑GGATTC < 1:4869426/91‑1 GTGGTTCTGGGAGTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATT‑GGATTCC < 1:1758552/91‑1 GTGGTTCTGGGAGTGGGACAGAAATGATATTTTCACAAAATTGATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATT‑GGATTCC < 1:5497175/91‑1 TGGTTCTGGGAGTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATT‑GGATTCCC < 1:4634062/91‑1 TGGTTCTGGGAGTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATT‑GGATTCCC < 1:2533881/91‑1 TGGTTCTGGGAGTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATT‑GGATTCCC < 1:1484898/91‑1 TGGTTCTGGGAGTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATT‑GGATTCCC < 1:39626/91‑1 TGGTTCTGGGAGTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATT‑GGATTCCC < 2:5220396/91‑1 TGGTTCTGGGAGTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATT‑GGATTCCC < 1:1577431/91‑1 TGGTTCTGGGAGTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATT‑GGATTCCC < 2:779627/91‑1 TGGTTCTGGGAGTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATT‑GGATTCCC < 1:3400871/91‑1 GTTCTGGGAGTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATT‑GGATTCCCAA < 2:316352/91‑1 GTTCTGGGAGTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATT‑GGATTCCCAA < 2:1215135/91‑1 TTCTGGGAGTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATT‑GGATTCCCAAT < 2:3467073/91‑1 GTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATT‑GGATTCCCAATTTCTAcag < 2:1195999/91‑4 GACAGAAATGATATTATCGTAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATT‑GGATTCCCAATTTCTACAGACAA < 1:2386197/91‑1 AGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATT‑GGATTCCCAATTTCTACAGACAATGC < 1:3243866/91‑1 TCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTTTAAATT‑GGGAATCCAATTTCTAGAGACAATGCAAGTTGGGGTGGG > 2:1733998/1‑91 ATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATT‑GGGAATCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATA > 1:1998574/1‑91 TCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATT‑GGGAATCCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAAT > 2:3195962/1‑91 CCCACCCCAACTTGCATTGTCTCTAGAAATT‑GGGAATCCAATTTCTAGAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGTGA > 1:4624381/1‑91 CCCAACTTGCATTGTCTGTAGAAATTGGGAAT‑CCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATA > 1:994263/1‑91 CTAGAAATTGGGAAT‑CCAATTTCTAGAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGTGAAAATATCATTTCTGTCCCACTC > 2:5566900/1‑91 AGAAATT‑GGCTTCCCAATTTCTAGAGACAATGCAAATTGGGGTGGGACGACGAAATAAATTTTGTGAAAATATCATTTCTGTCCCACTCCC > 2:4557466/1‑91 AGAAATT‑GGATTCCCAATTTCTAGAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGTGAAAATATCATTTCTGTCCCACTCCC < 1:2352607/91‑1 AGAAATT‑GGATTCCCAATTTCTAGAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGTGAAAATATCATTTCTGTCCCACTCCC > 1:2410419/1‑91 AGAAATT‑GGATTCCCAATTTCTAGAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGTGAAAATATCATTTCTGTCCCACTCCC < 1:5162906/91‑1 AGAAATT‑GGATTCCCAATTTCTAGAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGTGAAAATATCATTTCTGTCCCACTCCC > 1:1736059/1‑91 GAAATT‑GGATTCCCAATTTCTAGAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGTGAAAATATCATTTCTGTCCCACTCCCA > 2:3955183/1‑91 GAAATT‑GGATTCCCAATTTCTAGAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGTGAAAATATCATTTCTGTCCCACTCCCA > 2:2677702/1‑91 GAAATT‑GGATTCCCAATTTCTAGAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGTGAAAATATCATTTCTGTCCCACTCCCA < 1:2578257/91‑1 GAAATT‑GGATTCCCAATTTCTAGAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGTGAAAATATCATTTCTGTCCCACTCCCA < 2:4316150/91‑1 GAAATT‑GGATTCCCAATTTCTAGAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGTGAAAATATCATTTCTGTCCCACTCCCA > 2:1684469/1‑91 GAAATT‑GGATTCCCAATTTCTAGAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGTGAAAATATCATTTCTGTCCCACTCCCA < 1:3634213/91‑1 GAAATT‑GGATTCCCAATTTCTAGAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGTGAAAATATCATTTCTGTCCCACTCCCA < 1:5541410/91‑1 GAAATT‑GGATTCCCAATTTCTAGAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGTGAAAATATCATTTCTGTCCCACTCCCA > 1:5394937/1‑91 GAAATT‑GGATTCCCAATTTCTAGAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGTGAAAATATCATTTCTGTCCCACTCCCA < 1:2408064/91‑1 GAAATG‑GGATTCCCAATTTCTAGAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGTGAAAATATCATTTCTGTCCCACTCCCA < 2:4173128/91‑1 AAATT‑GGATTCCCAATTTCTAGAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGTGAAAATATCATTTCTGTCCCACTCCCAG < 2:1815017/91‑1 AAATT‑GGATTCCCAATTTCTAGAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGTGAAAATATCATTTCTGTCCCACTCCCAG < 1:1191260/91‑1 AAATT‑GGATTCCCAATTTCTAGAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGTGAAAATATCATTTCTGTCCCACTCCCAG > 1:3209104/1‑91 AAATT‑GGATTCCCAATTTCTAGAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGTGAAAATATCATTTCTGTCCCACTCCCAG > 1:3538261/1‑91 AAATT‑GGATTCCCAATTTCTAGAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGTGAAAATATCATTTCTGTCCCACTCCCAG > 1:3945327/1‑91 AAATT‑GGATTCCCAATTTCTAGAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGTGAAAATATCATTTCTGTCCCACTCCCAG < 1:4189067/91‑1 AAATT‑GGATTCCCAATTTCTAGAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGTGAAAATATCATTTCTGTCCCACTCCCAG > 1:1848916/1‑91 AAATT‑GGATTCCCAATTTCTAGAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGTGAAAATATCATTTCTGTCCCACTCCCAG > 1:1811212/1‑91 AAATT‑GGATTCCCAATTTCTAGAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGTGAAAATATCATTTCTGTCCCACTCCCAG > 2:1637754/1‑91 AATT‑GGATTCCCAATTTCTAGAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGTGAAAATATCATTTCTGTCCCACTCCCAGA < 2:4061457/91‑1 AATT‑GGATTCCCAATTTCTAGAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGTGAAAATATCATTTCTGTCCCACTCCCAGA < 1:5263987/91‑1 AATT‑GGATTCCCAATTTCTAGAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGTGAAAATATCATTTCTGTCCCACTCCCAGA > 1:5103494/1‑91 ATT‑GGATTCCCAATTTCTAGAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGTGAAAATATCATTTCTGTCCCACTCCCAGAA < 1:1755604/91‑1 ATT‑GGATTCCCAATTTCTAGAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGTGAAAATATCATTTCTGTCCCACTCCCAGAA < 1:351412/91‑1 ATT‑GGATTCCCAATTTCTAGAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGTGAAAATATCATTTCTGTCCCACTCCCAGAA < 1:266938/91‑1 TT‑GGATTCCCAATTTCTAGAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGTGAAAATATCATTTCTGTCCCACTCCCAGAAC > 2:4238115/1‑91 TT‑GGATTCCCAATTTCTAGAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGTGAAAATATCATTTCTGTCCCACTCCCAGAAC > 2:4957024/1‑91 TT‑GGATTCCCAATTTCTAGAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGTGAAAATATCATTTCTGTCCCACTCCCAGAAC > 1:2638017/1‑91 T‑GGATTCCCAATTTCTAGAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGTGAAAATATCATTTCTGTCCCACTCCCAGAACC < 1:1739424/91‑1 T‑GGATTCCCAATTTCTAGAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGTGAAAATATCATTTCTGTCCCACTCCCAGAACC < 2:4173001/91‑1 GGATTCCCAATTTCTAGAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGTGAAAATATCATTTCTGTCCCACTCCCAGAACCA > 2:3582075/1‑91 GGATTCCCAATTTCTAGAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGTGAAAATATCATTTCTGTCCCACTCCCAGAACCA > 2:3581179/1‑91 GGATTCCCAATTTCTAGAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGTGAAAATATCATTTCTGTCCCACTCCCAGAACCA > 2:3103778/1‑91 ATTTATTATGTAGTGGTTCTGGGAGTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATT‑GG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2555257‑2555354‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agaaatt‑ggATTCCCAATTTCTAGAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGTGAAAATATCATTTCTGTCCCACTCCCAGAACCA < USA300TCH1516_ALE/2555358‑2555270 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |