BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2555354	249 (0.870)	19 (0.070)	6/142	NT	7.8%	intergenic (‑325/+544)	irtA/yfdG	Iron import ATP‑binding/permease protein IrtA/Prophage bactoprenol‑linked glucose translocase
*	?	USA300TCH1516_ALE	= 2555358	231 (0.910)	19 (0.070)	6/142	NT	7.8%	intergenic (‑329/+540)	irtA/yfdG	Iron import ATP‑binding/permease protein IrtA/Prophage bactoprenol‑linked glucose translocase

Only 100 of 347 total aligned reads displayed.

AGTGGTTCTGGGAGTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGTAGAGTCTAGTACATTGATTTGTATCCCAATGTCCCTATAATTGATTATTCGC  >  USA300TCH1516_ALE/2555268‑2555448

aGTGGTTCTGGGAGTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAAt                                                                                            >  1:981844/1‑91 (MQ=255)

  tGGTTCTGGGAGTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATcc                                                                                          >  2:3581179‑M2/1‑89 (MQ=255)

     ttCTGGGAGTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATccaat                                                                                       <  1:1755604‑M2/91‑6 (MQ=255)

      tCTGGGAGTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATccaatt                                                                                      >  1:5103494‑M2/1‑85 (MQ=255)

       cTGGGAGTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATccaattt                                                                                     <  1:1191260‑M2/91‑8 (MQ=255)

       cTGGGAGTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATccaattt                                                                                     >  2:1637754‑M2/1‑84 (MQ=255)

       cTGGGAGTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATccaattt                                                                                     >  1:1811212‑M2/1‑84 (MQ=255)

       cTGGGAGTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATccaattt                                                                                     >  1:1848916‑M2/1‑84 (MQ=255)

       cTGGGAGTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATccaattt                                                                                     >  1:3538261‑M2/1‑84 (MQ=255)

        tGGGAGTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATccaatttc                                                                                    <  2:4316150‑M2/91‑9 (MQ=255)

        tGGGAGTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATccaatttc                                                                                    >  2:2677702‑M2/1‑83 (MQ=255)

         gggAGTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAATTTGCATTGTCTCTAGAAATTGGGAAGccaatttct                                                                                   >  2:4557466‑M2/1‑82 (MQ=255)

         gggAGTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATccaatttct                                                                                   >  1:2410419‑M2/1‑82 (MQ=255)

          ggAGTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATCCAATTtctc                                                                                  <  1:2272063/91‑1 (MQ=39)

          ggAGTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATCCAATTtctc                                                                                  >  2:2466481/1‑91 (MQ=38)

          ggAGTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATCCAATTtctc                                                                                  <  1:3289560/91‑1 (MQ=39)

           gAGTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATCCAATTTctct                                                                                 <  2:1477590/91‑1 (MQ=38)

             gTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCttt                                                                               >  2:2156592/1‑91 (MQ=39)

             gTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCttt                                                                               >  1:4455996/1‑91 (MQ=39)

             gTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCttt                                                                               >  1:4569652/1‑91 (MQ=39)

             gTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCttt                                                                               >  2:482253/1‑91 (MQ=39)

              tGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCTttg                                                                              >  2:46897/1‑91 (MQ=39)

              tGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCTttg                                                                              <  2:548062/91‑1 (MQ=39)

               gggACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCTttgt                                                                             <  1:1682403/91‑1 (MQ=39)

                  aCAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCTTTGTTgg                                                                          <  2:777549/91‑1 (MQ=39)

                      aaaTGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGTcc                                                                      <  1:1305187/91‑1 (MQ=255)

                       aaTGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGTccc                                                                     <  1:2875238/91‑1 (MQ=255)

                       aaTGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGTccc                                                                     <  1:3934144/91‑1 (MQ=255)

                         tGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGTCCCTg                                                                   >  2:4063745/1‑91 (MQ=255)

                         tGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATAGGGAATCCAATTTCTCTTTGTTGGGTCACTg                                                                   >  1:5245231/1‑91 (MQ=255)

                          gATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGa                                                                  >  2:4853725/1‑91 (MQ=255)

                          gATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGa                                                                  >  2:5272628/1‑91 (MQ=255)

                           atatTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGaa                                                                 <  1:5512691/91‑1 (MQ=255)

                            tatTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGAat                                                                <  2:3124121/91‑1 (MQ=255)

                            tatTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGAat                                                                <  2:5141164/91‑1 (MQ=255)

                            tatTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGAat                                                                <  1:3725775/91‑1 (MQ=255)

                             atTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGAata                                                               >  1:631371/1‑91 (MQ=255)

                              ttttCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGAatat                                                              <  1:4625206/91‑1 (MQ=255)

                               tttCACAACATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATCCCATCTCTCTTTGTTGGGTCCCTGAAtata                                                             >  2:1074527/1‑91 (MQ=255)

                                ttCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGAATATAg                                                            <  2:3787306/91‑1 (MQ=255)

                                 tCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCTTTGTCTCTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGAATATAGc                                                           <  2:1434465/91‑1 (MQ=255)

                                  cacaAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATCCACTTTCTCTTTGTTGGGTCCCTGAATATAGcc                                                          >  2:3994310/1‑91 (MQ=255)

                                  cacaAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGAATATAGcc                                                          >  1:4124455/1‑91 (MQ=255)

                                   acaAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCt                                                         >  1:2061934/1‑91 (MQ=255)

                                    caAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCtt                                                        >  1:4299521/1‑91 (MQ=255)

                                      aaaTTTATTTGGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGt                                                      <  1:1131533/91‑1 (MQ=255)

                                      aaaTTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGt                                                      <  1:5266246/91‑1 (MQ=255)

                                      aaaTTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGt                                                      <  1:918667/91‑1 (MQ=255)

                                       aaTTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGTa                                                     >  1:2723296/1‑91 (MQ=255)

                                        atttatttCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGATTCccaatttctacagacaatgcaagttggggtgggacgacga                                                    >  2:3195962‑M2/1‑51 (MQ=255)

                                         tttatttCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGTaga                                                   <  1:5016780/91‑1 (MQ=255)

                                           tatttCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGTAGAGt                                                 <  1:24018/91‑1 (MQ=255)

                                            atttCGTCGTCCCACCCCAACTTGCATTGTGTCTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGTAGAGTc                                                <  2:5595064/91‑1 (MQ=255)

                                            atttCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGTAGAGTc                                                >  1:858533/1‑91 (MQ=255)

                                              ttCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGTAGAGTCTa                                              >  2:4512412/1‑91 (MQ=255)

                                              ttCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGTAGAGTCTa                                              <  2:5001858/91‑1 (MQ=255)

                                              ttCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGTAGAGTCTa                                              >  2:5082190/1‑91 (MQ=255)

                                               tcgtcgTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGTAGAGTCTAg                                             <  2:2995823/91‑1 (MQ=255)

                                                 gtcgtcCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGTAGAGTCTAGTa                                           >  1:3843589/1‑91 (MQ=255)

                                                     tcCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGTAGAGTCTAGTACAtt                                       <  1:2352811/91‑1 (MQ=255)

                                                       ccACCCCAACTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGTAGAGTCTAGTACATTGa                                     >  1:5441957/1‑91 (MQ=255)

                                                       ccACCCCAACTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGTAGAGTCTAGTACATTGa                                     <  1:3807786/91‑1 (MQ=255)

                                                          ccccAACTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGTAGAGTCTGGTACATTGAttt                                  >  2:3604220/1‑91 (MQ=255)

                                                          ccccAACTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGTAGAGTCTAGTACATTGAttt                                  <  1:768355/91‑1 (MQ=255)

                                                          ccccAACTTGAATTGTCTCTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGTAGAGTCTAGTACATTGAttt                                  >  2:2881089/1‑91 (MQ=255)

                                                           cccAACTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGTAGAGTCTAGTACATTGATTTg                                 >  1:4222268/1‑91 (MQ=255)

                                                           cccAACTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGTAGAGTCTAGTACATTGATTTg                                 >  2:3368526/1‑91 (MQ=255)

                                                              aaCTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGTAGAGTCTAGTACATTGATTTGTAt                              <  1:2155067/91‑1 (MQ=255)

                                                               aCTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGTAGAGTCTAGTACATTGATTTGTATc                             <  2:4755514/91‑1 (MQ=255)

                                                               aCTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGTAGAGTCTAGTACATTGATTTGTATc                             <  1:3089200/91‑1 (MQ=255)

                                                               aCTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGTAGAGTCTAGTACATTGATTTGTATc                             >  1:1908149/1‑91 (MQ=255)

                                                               aCTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGTAGAGTCTAGTACATTGATTTGTATc                             <  2:1267076/91‑1 (MQ=255)

                                                               aCTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGTAGAGTCTAGTACATTGATTTGTATc                             >  1:1970178/1‑91 (MQ=255)

                                                                    cATTGTCTCTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGTAGAGTCTAGTACATTGATTTGTATCCCAAt                        >  1:4035157/1‑91 (MQ=255)

                                                                    cATTGTCTCTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGTAGAGTCTAGTACATTGATTTGTATCCCAAt                        >  2:367802/1‑91 (MQ=255)

                                                                      ttGTCTCTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGTAGAGTCTAGTACATTGATTTGTATCCCAATGt                      <  1:2447456/91‑1 (MQ=255)

                                                                         tctcTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGTAGAGTCTAGTACATTGATTTGTATCCCAATGTccc                   <  2:2365424/91‑1 (MQ=255)

                                                                          ctgtagaAATTGGGAATccaatttctacagacaatgcaagttggggtgggacgacgaaataaattttgcgaaagtatcatttctgtcccac                  <  2:1195999‑M2/88‑75 (MQ=255)

                                                                              aGAAATTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGTAGAGTCTAGTACATTGATTTGTATCCCAATGTCCCTATaa              >  2:1965971/1‑91 (MQ=255)

                                                                               gAAATTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGTAGAGTCTAGTACATTGATTTGTATCCCAATGTCCCTATAAt             >  1:2581170/1‑91 (MQ=255)

                                                                               gAAATTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGTAGAGTCTAGTACATTGATTTGTATCCCAATGTCCCTATAAt             <  1:3194794/91‑1 (MQ=255)

                                                                                aaaTTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGTAGAGTCTAGTACATTGATTTGTATCCCAATGTCCCTATAAtt            <  1:4781854/91‑1 (MQ=255)

                                                                                aaaTTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGTAGAGTCTAGTACATTGATTTGTATCCCAATGTCCCTATAAtt            <  2:1540616/91‑1 (MQ=255)

                                                                                aaaTTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGTAGAGTCTAGTACATTGATTTGTATCCCAATGTCCCTATAAtt            <  2:1772711/91‑1 (MQ=255)

                                                                                 aaTTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGTAGAGTCTAGTACATTGATTTGTATCCCAATGTCCCTATAATTg           <  1:4376940/91‑1 (MQ=255)

                                                                                 aaTTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGTAGAGTCTAGTACATTGATTTGTATCCCAATGTCCCTATAATTg           <  2:4371118/91‑1 (MQ=255)

                                                                                    tGGGAATCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGTAGAGTCTAGTACATTGATTTGTATCCCAATGTCCCTATAATTGatt        >  2:828874/1‑91 (MQ=255)

                                                                                    tGGGAATCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGTAGAGTCTAGTACATTGATTTGTATCCCAATGTCCCTATAATTGatt        >  1:4012720/1‑91 (MQ=255)

                                                                                     gggAATccaatttctagagacaatgcaagttggggtgggacgacgaaataaattttgtgaaaatatcatttctgtcccactcccagaacca       <  1:2533881‑M2/91‑86 (MQ=255)

                                                                                     gggAATccaatttctagagacaatgcaagttggggtgggacgacgaaataaattttgtgaaaatatcatttctgtcccactcccagaacca       <  1:1577431‑M2/91‑86 (MQ=255)

                                                                                     gggAATccaatttctagagacaatgcaagttggggtgggacgacgaaataaattttgtgaaaatatcatttctgtcccactcccagaacca       <  1:1484898‑M2/91‑86 (MQ=255)

                                                                                     gggAATCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGTAGAGTCTAGTACATTGATTTGTATCCCAATGTCCCTATAATTGatta       >  2:4919571/1‑91 (MQ=255)

                                                                                      ggAATCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGTAGAGTCTAGTACATTGATTTGTATCCCAATGTCCCTATAATTGattat      <  2:1294151/91‑1 (MQ=255)

                                                                                       gAATccaatttctagagacaatgcaagttggggtgggacgacgaaataaattttgtgaaaatatcatttctgtcccactcccagaaccact     <  1:3437809‑M2/91‑88 (MQ=255)

                                                                                       gAATccaatttctagagacaatgcaagttggggtgggacgacgaaataaattttgtgaaaatatcatttctgtcccactcccagaaccact     <  1:4869426‑M2/91‑88 (MQ=255)

                                                                                       gAATCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGTAGAGTCTAGTACATTGATTTGTATCCCAATGTCCCTATAATTGattatt     >  2:3884872/1‑91 (MQ=255)

                                                                                       gAATCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGTAGAGTCTAGTACATTGATTTGTATCCCAATGTCCCTATAATTGattatt     >  2:3472770/1‑91 (MQ=255)

                                                                                        aaTccaatttctagagacaatgcaagttggggtgggacgacgaaacaaattttgtgaaaatatcatttctgtcccacccccagaaccacta    <  2:2645486‑M2/91‑89 (MQ=255)

                                                                                          tCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGTAGAGTCTAGTACATTGATTTGTATCCCAATGTCCCTATAATTGATTATTCGc  <  1:3131678/91‑1 (MQ=255)

                                                                                          tCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGTAGAGTCTAGTACATTGATTTGTATCCCAATGTCCCTATAATTGATTATTCGc  <  2:421679/91‑1 (MQ=255)

AGTGGTTCTGGGAGTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGTAGAGTCTAGTACATTGATTTGTATCCCAATGTCCCTATAATTGATTATTCGC  >  USA300TCH1516_ALE/2555268‑2555448

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.