| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2555354 | 249 (0.870) | 19 (0.070) | 6/142 | NT | 7.8% | intergenic (‑325/+544) | irtA/yfdG | Iron import ATP‑binding/permease protein IrtA/Prophage bactoprenol‑linked glucose translocase |
| ? | USA300TCH1516_ALE | = 2555358 | 231 (0.910) | intergenic (‑329/+540) | irtA/yfdG | Iron import ATP‑binding/permease protein IrtA/Prophage bactoprenol‑linked glucose translocase | |||||
Only 100 of 407 total aligned reads displayed.
ATGTAGTGGTTCTGGGAGTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGTAGAGTCTAGTACATTGATTTGTATCCCAATGTCCCTATAATTGATTAT > USA300TCH1516_ALE/2555264‑2555444 | tGTAGTGGTTCTGGGAGTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTggg > 1:2497687/1‑91 (MQ=255) tGTAGTGGTTCTGGGAGTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTggg > 1:1010683/1‑91 (MQ=255) gTAGTGGTTCTGGGAGTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGa < 1:3986038/91‑1 (MQ=255) aGTGGTTCTGGGAGTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGattc < 1:3437809‑M1/91‑5 (MQ=255) aGTGGTTCTGGGAGTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAAt > 1:981844/1‑91 (MQ=255) aGTGGTTCTGGGAGTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAAt < 2:1433276/91‑1 (MQ=255) gTGGTTCTGGGAGTGGGACAGAAATGATATTTTCACAAAATTGATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGattcc < 1:5497175‑M1/91‑6 (MQ=255) tGGTTCTGGGAGTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGattccc < 2:5220396‑M1/91‑7 (MQ=255) tGGTTCTGGGAGTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATcc > 2:3103778‑M2/1‑89 (MQ=255) gTTCTGGGAGTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATccaa > 2:4238115‑M2/1‑87 (MQ=255) ttCTGGGAGTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATccaat < 1:266938‑M2/91‑6 (MQ=255) tCTGGGAGTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATccaatt < 1:5263987‑M2/91‑7 (MQ=255) tCTGGGAGTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATccaatt > 1:5103494‑M2/1‑85 (MQ=255) tCTGGGAGTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATccaatt < 2:4061457‑M2/91‑7 (MQ=255) cTGGGAGTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATccaattt < 2:1815017‑M2/91‑8 (MQ=255) cTGGGAGTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATccaattt > 2:1637754‑M2/1‑84 (MQ=255) cTGGGAGTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATccaattt > 1:3209104‑M2/1‑84 (MQ=255) tGGGAGTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATccaatttc > 1:5394937‑M2/1‑83 (MQ=255) tGGGAGTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATccaatttc < 1:2408064‑M2/91‑9 (MQ=255) tGGGAGTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATccaatttc > 2:3955183‑M2/1‑83 (MQ=255) gggAGTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAATTTGCATTGTCTCTAGAAATTGGGAAGccaatttct > 2:4557466‑M2/1‑82 (MQ=255) gAGTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATCCAATTTctct < 2:1477590/91‑1 (MQ=38) gTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCttt > 1:4569652/1‑91 (MQ=39) gTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCttt > 1:194439/1‑91 (MQ=39) gTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCttt > 1:4455996/1‑91 (MQ=39) gTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCttt > 1:4033498/1‑91 (MQ=39) gggACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCTttgt > 2:80798/1‑91 (MQ=39) gggACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCTttgt < 2:2514312/91‑1 (MQ=39) aaaTGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGTcc < 1:3659842/91‑1 (MQ=255) aaaTGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGTcc > 2:1285264/1‑91 (MQ=255) aaaTGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGTcc < 1:1305187/91‑1 (MQ=255) aaTGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGTccc < 1:2875238/91‑1 (MQ=255) aaTGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGTccc < 2:761485/91‑1 (MQ=255) tatTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGAat > 2:4991185/1‑91 (MQ=255) tatTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGAat < 2:4324815/91‑1 (MQ=255) ttttCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGAatat < 1:4625206/91‑1 (MQ=255) ttttCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGAatat < 2:5080094/91‑1 (MQ=255) tttCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGAAtata > 1:2601967/1‑91 (MQ=255) tCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTTTAAATTGGgaatccaatttctagagacaatgcaagttggggtggg > 2:1733998‑M1/1‑54 (MQ=255) cacaAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGAATATAGcc > 1:4124455/1‑91 (MQ=255) acaAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCt < 2:2965004/91‑1 (MQ=255) acaAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCt < 1:3872937/91‑1 (MQ=255) acaAAATTTATTTCGTCGTCCCACCCCAACTAGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCt < 1:5234688/91‑1 (MQ=255) aaaaTTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTg < 1:3393818/91‑1 (MQ=255) aaTTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGTa < 1:424834/91‑1 (MQ=255) tttatttCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGTaga > 2:2429781/1‑91 (MQ=255) tatttCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGATTCccaatttctacagacaatgcaagttggggtgggacgacgaaat > 1:1998574‑M2/1‑48 (MQ=255) tatttCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGTAGAGt < 2:2240418/91‑1 (MQ=255) atttCGTCGTCCCACCCCAACTTGCATTGTGTCTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGTAGAGTc < 2:5595064/91‑1 (MQ=255) atttCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGTAGAGTc > 1:858532/1‑91 (MQ=255) atttCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGTAGAGTc > 2:5283120/1‑91 (MQ=255) tttCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGTAGAGTCt < 2:4891330/91‑1 (MQ=255) ttCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGTAGAGTCTa > 2:2020237/1‑91 (MQ=255) ttCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGTAGAGTCTa > 2:4512412/1‑91 (MQ=255) tcgtcgTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGTAGAGTCTAg < 2:3555348/91‑1 (MQ=255) cgtcgtCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGTAGAGTCTAGt < 2:5126320/91‑1 (MQ=255) gtcgtcCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGTAGAGTCTAGTa < 2:1010683/91‑1 (MQ=255) gtcgtcCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGTAGAGTCTAGTa < 2:3401260/91‑1 (MQ=255) gtcCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGTAGAGTCTAGTACAt < 1:2240524/91‑1 (MQ=255) cccACCCCAACTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGTAGAGTCTAGTACATTg < 1:889241/91‑1 (MQ=255) ccACCCCAACTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGTAGAGTCTAGTACATTGa < 1:3807786/91‑1 (MQ=255) aCCCCAACTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGTAGAGTCTAGTACATTGAtt < 1:656183/91‑1 (MQ=255) ccccAACTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGTAGAGTCTCGTACATTGAttt > 2:3605336/1‑91 (MQ=255) ccccAACTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGTAGAGTCTAGTACATTGAttt > 2:3718973/1‑91 (MQ=255) cccAACTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGTAGAGTCTAGTACATTGATTTg < 1:4357676/91‑1 (MQ=255) aCTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGTAGAGTCTAGTACATTGATTTGTATc < 2:2734509/91‑1 (MQ=255) aCTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGTAGAGTCTAGTACATTGATTTGTATc < 1:3089200/91‑1 (MQ=255) aCTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGTAGAGTCTAGTACATTGATTTGTATc < 2:4844064/91‑1 (MQ=255) cTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGTAGAGTCTAGTACATTGATTTGTATcc > 1:3191149/1‑91 (MQ=255) ttGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGTAGAGTCTAGTACATTGATTTGTATccc < 2:1167560/91‑1 (MQ=255) gCATTGTCGCTAGAAATTGGGAATCCAATTTCTCTTTGTTGGTTCCCTGAATATAGCCTTGTAGAGTCTAGTACATTGATTTGTATCCCaa < 2:3248339/91‑1 (MQ=255) aTTGTCTCTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGTAGAGTCTAGTACATTGATTTGTATCCCAATg < 1:5017056/91‑1 (MQ=255) ttGTCTGTAGAAATTGGGAATccaatttctacagacaatgcaagttggggtgggacgacgaaataaattttacgataatatcatttctgtc < 1:2386197‑M2/91‑71 (MQ=255) tGTCTCTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGTAGAGTCTAGTACATTGATTTGTATCCCAATGTc < 1:1767535/91‑1 (MQ=255) ctctAGAAATTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGTAGAGTCTAGTACATTGATTTGTATCCCAATGTCCCt < 1:2146820/91‑1 (MQ=255) aGAAATTGGattcccaatttctagagacaatgcaagttggggtgggacgacgaaataaattttgtgaaaatatcatttctgtcccactccc < 1:2352607‑M1/91‑83 (MQ=255) aGAAATTGGattcccaatttctagagacaatgcaagttggggtgggacgacgaaataaattttgtgaaaatatcatttctgtcccactccc > 1:1736059‑M1/1‑9 (MQ=255) aGAAATTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGTAGAGTCTAGTACATTGATTTGTATCCCAATGTCCCTATaa < 1:487266/91‑1 (MQ=255) gAAATTGGattcccaatttctagagacaatgcaagttggggtgggacgacgaaataaattttgtgaaaatatcatttctgtcccactccca < 1:5541410‑M1/91‑84 (MQ=255) gAAATTGGattcccaatttctagagacaatgcaagttggggtgggacgacgaaataaattttgtgaaaatatcatttctgtcccactccca < 1:2578257‑M1/91‑84 (MQ=255) gAAATTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGTAGAGTCTAGTACATTGATTTGTATCCCAATGTCCATATAAt > 1:4708406/1‑91 (MQ=255) gAAATGGGattcccaatttctagagacaatgcaagttggggtgggacgacgaaataaattttgtgaaaatatcatttctgtcccactccca < 2:4173128‑M1/91‑84 (MQ=255) aaaTTGGattcccaatttctagagacaatgcaagttggggtgggacgacgaaataaattttgtgaaaatatcatttctgtcccactcccag < 1:1191260‑M1/91‑85 (MQ=255) aaaTTGGattcccaatttctagagacaatgcaagttggggtgggacgacgaaataaattttgtgaaaatatcatttctgtcccactcccag < 1:4189067‑M1/91‑85 (MQ=255) aaaTTGGattcccaatttctagagacaatgcaagttggggtgggacgacgaaataaattttgtgaaaatatcatttctgtcccactcccag > 1:3538261‑M1/1‑7 (MQ=255) aaaTTGGattcccaatttctagagacaatgcaagttggggtgggacgacgaaataaattttgtgaaaatatcatttctgtcccactcccag > 1:3945327‑M1/1‑7 (MQ=255) aaaTTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGTAGAGTCTAGTACATTGATTTGTATCCCAATGTCCCTATAAtt < 1:2444666/91‑1 (MQ=255) aaaTTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGTAGAGTCTAGTACATTGATTTGTATCCCAATGTCCCTATAAtt < 2:1540616/91‑1 (MQ=255) aTTGGattcccaatttctagagacaatgcaagttggggtgggacgacgaaataaattttgtgaaaatatcatttctgtcccactcccagaa < 1:1755604‑M1/91‑87 (MQ=255) aTTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGTAGAGTCTAGTACATTGATTTGTATCCCAATGTCCCTATAATTGa > 2:3817437/1‑91 (MQ=255) ttGGGAATccaatttctagagacaatgcaagttggggtgggacgacgaaataaattttgtgaaaatatcatttctgtcccactcccagaac < 2:1215135‑M2/91‑84 (MQ=255) ttGGGAATccaatttctagagacaatgcaagttggggtgggacgacgaaataaattttgtgaaaatatcatttctgtcccactcccagaac < 2:316352‑M2/91‑84 (MQ=255) gggAATccaatttctagagacaatgcaagttggggtgggacgacgaaataaattttgtgaaaatatcatttctgtcccactcccagaacca < 1:1577431‑M2/91‑86 (MQ=255) gggAATccaatttctagagacaatgcaagttggggtgggacgacgaaataaattttgtgaaaatatcatttctgtcccactcccagaacca < 1:1484898‑M2/91‑86 (MQ=255) ggattcccaatttctagagacaatgcaagttggggtgggacgacgaaataaattttgtgaaaatatcatttctgtcccactcccagaacca > 2:3582075‑M1/1‑2 (MQ=255) ggAATCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGTAGAGTCTAGTACATTGATTTGTATCCCAATGTCCCTATAATTGattat > 2:479666/1‑91 (MQ=255) ggAATCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGTAGAGTCTAGTACATTGATTTGTATCCCAATGTCCCTATAATTGattat > 2:4746437/1‑91 (MQ=255) ggAATCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGTAGAGTCTAGTACATTGATTTGTATCCCAATGTCCCTATAATTGattat < 2:266938/91‑1 (MQ=255) ggAATCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGTAGAGTCTAGTACATTGATTTGTATCCCAATGTCCCTATAATTGattat > 1:1816694/1‑91 (MQ=255) ggAATCCAATTGCTCTTTGTTGGGTCCCTGAATATATCCTTGTAGAGTCTAGTACATTGATTTGTATCCCAAGGTCCCTATAATTGattat < 1:1850397/91‑1 (MQ=255) | ATGTAGTGGTTCTGGGAGTGGGACAGAAATGATATTTTCACAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGTCCCTGAATATAGCCTTGTAGAGTCTAGTACATTGATTTGTATCCCAATGTCCCTATAATTGATTAT > USA300TCH1516_ALE/2555264‑2555444 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |