| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2833267 = | 301 (1.050) | 6 (0.020) | 5/148 | NT | 2.1% | intergenic (‑603/+487) | lipA_2/hisI | Lipase 1/Phosphoribosyl‑AMP cyclohydrolase |
| ? | USA300TCH1516_ALE | 2833307 = | 282 (1.060) | intergenic (‑643/+447) | lipA_2/hisI | Lipase 1/Phosphoribosyl‑AMP cyclohydrolase | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AAATAGAAATGTCATAGCCTATTTAAAAGACAATCTCCATTAGAACTAAGATATGCATCCCGAAAGTTAGACTAAAAAACTAACTTTATGGGATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2833361‑2833267‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggatgCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTCTATTTCAGGCTAGATATATTTGTATTTATAGTATAAATAC > USA300TCH1516_ALE/2833307‑2833396 AAATAGAAATGTCATAGCCTATTTAAAAGACAATCTCCATTAGAACTAAGATATGCATCCCGAAAGTTAGACTAAAAAACTAACTTTATGG > 1:941344/1‑91 AATAGAAATGTCATAGCCTATTTAAAAGACAATCTCCATTAGAACTAAGATATGCATCCCGAAAGTTAGACTAAAAAACTAACTTTATGGG > 2:2111383/1‑91 AATAGAAATGTCATAGCCTATTTAAAAGACAATCTCCATTAGAACTAAGATATGCATCCCGAAAGTTAGACTAAAAAACTAACTTTATGGG > 2:1804381/1‑91 AATAGAAATGTCATAGCCTATTTAAAAGACAATCTCCATTAGAACTAAGATATGCATCCCGAAAGTTAGACTAAAAAACTAACTTTATGGG > 1:4075235/1‑91 ATAGAAATGTCATAGCCTATTTAAAAGACAATCTCCATTAGAACTAAGATATGCATCCCGAAAGTTAGACTAAAAAACTAACTTTATGGGA > 1:1231931/1‑91 ATAGAAATGTCATAGCCTATTTAAAAGACAATCTCCATTAGAACTAAGATATGCATCCCGAAAGTTAGACTAAAAAACTAACTTTATGGGA < 2:5334182/91‑1 ATAGAAATGTCATAGCCTATTTAAAAGACAATCTCCATTAGAACTAAGATATGCATCCCGAAAGTTAGACTAAAAAACTAACTTTATGGGA > 2:4091961/1‑91 ATAGAAATGTCATAGCCTATTTAAAAGACAATCTCCATTAGAACTAAGATATGCATCCCGAAAGTTAGACTAAAAAACTAACTTTATGGGA > 2:3661619/1‑91 ATAGAAATGTCATAGCCTATTTAAAAGACAATCTCCATTAGAACTAAGATATGCATCCCGAAAGTTAGACTAAAAAACTAACTTTATGGGA > 1:2756355/1‑91 ATAGAAATGTCATAGCCTATTTAAAAGACAATCTCCATTAGAACTAAGATATGCATCCCGAAAGTTAGACTAAAAAACTAACTTTATGGGA < 1:4056823/91‑1 TAGAAATGTCATAGCCTATTTAAAAGACAATCTCCATTAGAACTAAGATATGCATCCCGAAAGTTAGACTAAAAAACTAACTTTATGGGAT < 2:939465/91‑1 TAGAAATGTCATAGCCTATTTAAAAGACAATCTCCATTAGAACTAAGATATGCATCCCGAAAGTTAGACTAAAAAACTAACTTTATGGGAT > 2:12202/1‑91 TAGAAATGTCATAGCCTATTTAAAAGACAATCTCCATTAGAACTAAGATATGCATCCCGAAAGTTAGACTAAAAAACTAACTTTATGGGAT < 1:5105506/91‑1 TAGAAATGTCATAGCCTATTTAAAAGACAATCTCCATTAGAACTAAGATATGCATCCCGAAAGTTAGACTAAAAAACTAACTTTATGGGAT < 1:4317724/91‑1 AGAAATGTCATAGCCTATTTAAAAGACAATCTCCATTAGAACTAAGATATGCATCCCGAAAGTTAGACTAAAAAACTAACTTTATGGGATG < 1:440577/91‑1 AGAAATGTCATAGCCTATTTAAAAGACAATCTCCATTAGAACTAAGATATGCATCCCGAAAGTTAGACTAAAAAACTAACTTTATGGGATG < 2:4743593/91‑1 AGAAATGTCATAGCCTATTTAAAAGACAATCTCCATTAGAACTAAGATATGCATCCCGAAAGTTAGACTAAAAAACTAACTTTATGGGATG < 1:2972127/91‑1 AGAAATGTCATAGCCTATTTAAAAGACAATCTCCATTAGAACTAAGATATGCATCCCGAAAGTTAGACTAAAAAACTAACTTTATGGGATG < 2:1489682/91‑1 AGAAATGTCATAGCCTATTTAAAAGACAATCTCCATTAGAACTAAGATATGCATCCCGAAAGTTAGACTAAAAAACTAACTTTATGGGATG > 2:152310/1‑91 TGCATCCCGAAAGTTAGACTAAAAAACTAACTTTATGGGATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTT > 1:3194771/1‑91 CCCGAAAGTTAGACTAAAAAACTAACTTTATGGGATGTATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTCTATT > 1:894389/1‑91 CCGAAAGTTAGACTAAAAAACTAACTTTATGGGATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTCTATTT > 1:864986/1‑91 CGAAAGTTAGACTAAAAAACTAACTTTATGGGATGCATATCTTAGTTCTAATGGAGATTGTCTTTGAAATAGGCTATGACATTTCTATTTC > 2:3851/1‑91 AGACTAAAAAACTAACTTTATGGGATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTCTATTTCAGGCTAGA > 2:1354010/1‑91 AGACTAAAAAACTAACTTT‑CGGGATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTCTATTTCAGGCTAGAT > 1:1390381/1‑91 TGGGATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTCTATTTCAGGCTAGATATATTTGTATTTATAGTAT < 1:1354010/91‑1 GGGATGCATATCTTAGTTCTAATGGCGATTGTCTTTTAAATAGGCTATGGCATTTCTATTTCAGGCTAGATATATTTGTATTTATAGTATA < 2:5228064/91‑1 GGGATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTCTATTTCAGGCTAGATATATTTGTATTTATAGTATA > 1:3479264/1‑91 GGATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTCTATTTCAGGCTAGATATATTTGTATTTATAGTATAA > 1:2884999/1‑91 GGATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTCTATTTCAGGCTAGATATATTTGTATTTATAGTATAA > 1:2276497/1‑91 GGATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTCTATTTCAGGCTAGATATATTTGTATTTATAGTATAA > 1:3101775/1‑91 GGATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTCTATTTCAGGCTAGATATATTTGTATTTATAGTATAA > 1:3446588/1‑91 GATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAGTAGGCTATGACATTTCTATTTCAGGCTAGATATATTTGTATTTATAGTATAAA > 1:4321054/1‑91 GATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTCTATTTCAGGCTAGATATATTTGTATTTATAGTATAAA > 1:2420820/1‑91 GATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTCTATTTCAGGCTAGATATATTTGTATTTATAGTATAAA < 2:1614786/91‑1 tTGCATATCTTAGTTCTAATGGAGTTTGTCTTTTAAATAGGCTATGTCATTTGTATTTCAGGCTAGATATATTTGTATTTATAGTATAAAT < 2:4051762/90‑1 ATGTATATCGTAGTTCTAATGGAGATTGTCTTTTAAATTTGCTATTACATTTCTATTTCAAGCAAGATATATTTGTATTTATAGTATAAAT < 2:2705467/91‑1 ATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGTCTATGACATTTCTATTTCAGGCTAGATATATTTGTATTTATAGTATAAAT > 2:1610035/1‑91 ATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTCTATTTCAGGCTAGATATATTTGTATTTATAGTATAAAT < 2:290139/91‑1 ATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTCTATTTCAGGCTAGATATATTTGTATTTATAGTATAAAT < 2:4049420/91‑1 TGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTCTATTTCAGGCTAGATATATTTGTATTTATAGTATAAATA < 1:2427732/91‑1 TGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTCTATTTCAGGCTAGATATATTTGTATTTATAGTATAAATA > 1:5460088/1‑91 GCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTCTATTTCAGGCTAGATATATTTGTATTTATAGTATAAATAC > 2:2916192/1‑91 GCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTCTATTTCAGGCTAGATATATTTGTATTTATAGTATAAACAC > 2:4980387/1‑91 AAATAGAAATGTCATAGCCTATTTAAAAGACAATCTCCATTAGAACTAAGATATGCATCCCGAAAGTTAGACTAAAAAACTAACTTTATGGGATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2833361‑2833267‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggatgCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTCTATTTCAGGCTAGATATATTTGTATTTATAGTATAAATAC > USA300TCH1516_ALE/2833307‑2833396 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |