BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2833267 =	301 (1.050)	6 (0.020)	5/148	NT	2.1%	intergenic (‑603/+487)	lipA_2/hisI	Lipase 1/Phosphoribosyl‑AMP cyclohydrolase
*	?	USA300TCH1516_ALE	2833307 =	282 (1.060)	6 (0.020)	5/148	NT	2.1%	intergenic (‑643/+447)	lipA_2/hisI	Lipase 1/Phosphoribosyl‑AMP cyclohydrolase
Rejected: Frequency below/above cutoff threshold.

Only 100 of 392 total aligned reads displayed.

TAAGTATCCTACTATTTTTAATTTATTGTTTAATTACTCTTGAACTACCTTTAACTTAATCTCGAATTTATGATGATTAGCATAAAAATACATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTCT  >  USA300TCH1516_ALE/2833177‑2833357

taagtaTCCTACTATTTTTAATTTATTGTTTAATTACTCTTGAACTACCTTTAACTTAATCTCGAATTTATGATGATTAGCATAAAAATAc                                                                                            <  1:3124494/91‑1 (MQ=255)

taagtaTCCTACTATTTTTAATTTATTGTTTAATTACTCTTGAACTACCTTTAACTTAATCTCGAATTTATGATGATTAGCATAAAAATAc                                                                                            <  2:4569102/91‑1 (MQ=255)

 aagtaTCCTACTATTTTTAATTTATTGTTTAATTACTCTTGAACTACCTTTAACTTAATCTCGAATTTATGATGATTAGCATAAAAATACa                                                                                           <  1:1486118/91‑1 (MQ=255)

 aagtaTCCTACTATTTTTAATTTATTGTTTAATTACTCTTGAACTACCTTTAACTTAATCTCGAATTTATGATGATTAGCATAAAAATACa                                                                                           <  1:1904904/91‑1 (MQ=255)

  atttatactataaatacaaatatatctagcctgaaatagaaatgtcatagcctatttaaaagacaatctccattagaactaagatatgCAt                                                                                          <  2:4049420‑M1/3‑1 (MQ=255)

  agtaTCCTACTATTTTTAATTTATTGTTTAATTACTCTTGAACTACCTTTAACTTAATCTCGAATTTATGATGATTAGCATAAAAATACAt                                                                                          >  1:5041599/1‑91 (MQ=255)

  agtaTCCTACTATTTTTAATTTATTGTTTAATTACTCTTGAACTACCTTTAACTTAATCTCGAATTTATGATGATTAGCATAAAAATACAt                                                                                          >  2:324904/1‑91 (MQ=255)

  agtaTCCTACTATTTTTAATTTATTGTTTAATTACTCTTGAACTACCTTTAACTTAATCTCGAATTTATGATGATTAGCATAAAAATACAt                                                                                          >  1:5375368/1‑91 (MQ=255)

  agtaTCCTACTATTTTTAATTTATTGTTTAATTACTCTTGAACTACCTTTAACTTAATCTCGAATTTATGATGATTAGCATAAAAATACAt                                                                                          >  1:3420559/1‑91 (MQ=255)

  agtaTCCTACTATTTTTAATTTATTGTTTAATTACTCTTGAACTACCTTTAACTTAATCTCGAATTTATGATGATTAGCATAAAAATACAt                                                                                          >  2:1604632/1‑91 (MQ=255)

   tttatactataaatacaaatatatctagcctgaaatagaaatgtcatagcctatttaaaagacaatctccattagaactaagatatgCATc                                                                                         >  1:2420820‑M1/88‑91 (MQ=255)

   gtaTCCTACTATTTTTAATTTATTGTTTAATTACTCTTGAACTACCTTTAACTTAATCTCGAATTTATGATGATTAGCATAAAAATACATc                                                                                         >  2:1752201/1‑91 (MQ=255)

   gtaTCCTACTATTTTTAATTTATTGTTTAATTACTCTTGAACTACCTTTAACTTAATCTCGAATTTATGATGATTAGCATAAAAATACATc                                                                                         <  2:2865245/91‑1 (MQ=255)

    ttatactataaatacaaatatatctagcctgaaatagaaatgtcatagcctatttaaaagacaatctccattagaactaagatatgCATcc                                                                                        >  1:2884999‑M1/87‑91 (MQ=255)

       ccTACTATTTTTAATTTATTGTTTAATTACTCTTGAACTACCTTTAACTTAATCTCGAATTTATGATGATTAGCATAAAAATACATCCCAt                                                                                     <  1:5123529/91‑1 (MQ=255)

         tactaTTTTTAATTTATTGTTTAATTACTCTTGAACTACCTTTAACTTAATCTCGAATTTATGATGATTAGCATAAAAATACATCCCATaa                                                                                   >  2:4990882/1‑91 (MQ=255)

          actaTTTTTAATTTATTGTTTAATTACTCTTGAACTACCTTTAACTTAATCTCGAATTTATGATGATTAGCATAAAAATACATCCCATaaa                                                                                  <  2:4337403/91‑1 (MQ=255)

           ctaTTTTTAATTTATTGTTTAATTACTCTTGAACTACCTTTAACTTAATCTCGAATTTATGATGATTAGCATAAAAATACATCCCATAAag                                                                                 <  2:2238567/91‑1 (MQ=255)

            taTTTTTAATTTATTGTTTAATTACTCTTGAACTACCTTTAACTTAATCTCGAATTTATGATGATTAGCATAAAAATACATCCCATAAagt                                                                                <  1:1536024/91‑1 (MQ=255)

             aTTTTTAATTTATTGTTTAATTACTCTTGAACTACCTTTAACTTAATCTCGAATTTATGATGATTAGCATAAAAATACATCCCATAAagtt                                                                               >  2:4775093/1‑91 (MQ=255)

             aTTTTTAATTTATTGTTTAATTACTCTTGAACTACCTTTAACTTAATCTCGAATTTATGATGATTAGCATAAAAATACATCCCATAAagtt                                                                               <  2:2088715/91‑1 (MQ=255)

             aTTTTTAATTTATTGTTTAATTACTCTTGAACTACCTTTAACTTAATCTCGAATTTATGATGATTAGCATAAAAATACATCCCATAAagtt                                                                               <  2:1980438/91‑1 (MQ=255)

             aTTTTTAATTTATTGTTTAATTACTCTTGAACTACCTTTAACTTAATCTCGAATTTATGATGATTAGCATAAAAATACATCCCATAAagtt                                                                               <  1:3725528/91‑1 (MQ=255)

               ttttAATTTATTGTTTAATTACTCTTGAACTACCTTTAACTTAATCTCGAATTTATGATGATTAGCATAAAAATACATCCCATAAagttag                                                                             >  1:254301/1‑91 (MQ=255)

               ttttAATTTATTGTTTAATTACTCTTGAACTACCTTTAACTTAATCTCGAATTTATGATGATTAGCATAAAAATACATCCCATAAagttag                                                                             <  1:4199886/91‑1 (MQ=255)

                 ttAATTTATTGTTTAATTACTCTTGAACTACCTTTAACTTAATCTCGAATTTATGATGATTAGCATAAAAATACATCCCATAAagttagtt                                                                           >  1:2152259/1‑91 (MQ=255)

                  tAATTTATTGTTTAATTACTCTTGAACTACCTTTAACTTAATCTCGAATTTATGATGATTAGCATAAAAATACATCCCATAAAGTTAGttt                                                                          >  1:4897294/1‑91 (MQ=255)

                       tATCGTTTAATTACTCTTGAACTACCTTTAACTTAATCTCGAATTTATGATGATTAGCATAAAAATACATCCCATAAAGTTAGTTTTTTAg                                                                     <  1:5250909/91‑1 (MQ=255)

                         ttGTTTAATTACTCTTGAACTACCTTTAACTTAATCTCGAATTTATGATGATTAGCATAAAAATACATCCCATAAAGTTAGTTTTTTAGTc                                                                   <  1:1422701/91‑1 (MQ=255)

                         ttGTTTAATTACTCTTGAACTACCTTTAACTTAATCTCGAATTTATGATGATTAGCATAAAAATACATCCCATAAAGTTAGTTTTTTAGTc                                                                   <  2:1241750/91‑1 (MQ=255)

                         ttGTTTAATTACTCTTGAACTACCTTTAACTTAATCTCGAATTTATGATGATTAGCATAAAAATACATCCCATAAAGTTAGTTTTTTAGTc                                                                   <  1:554454/91‑1 (MQ=255)

                         ttGTTTAATTACTCTTGAACTACCTTTAACTTAATCTCGAATTTATGATGATTAGCATAAAAATACATCCCATAAAGTTAGTTTTTTAGTc                                                                   <  2:2624579/91‑1 (MQ=255)

                         ttGTTTAATTACTCTTGAACTACCTTTAACTTAATCTCGAATTTATGATGATTAGCATAAAAATACATCCCATAAAGTTAGTTTTTTAGTc                                                                   <  2:2557732/91‑1 (MQ=255)

                         ttGTTTAATTACTCTTGAACTACCTTTAACTTAATCTCGAATTTAAGATGATTAGCATAAAAATACATCCCATAAAGTTAGTTTTTTAGTc                                                                   <  1:261982/91‑1 (MQ=255)

                          tGTTTAATTACTCTTGAACTACCTTTAACTTAATCTCGAATTTATGATGATTAGCATAAAAATACATCCCATAAAGTTAGTTTTTTAGTCt                                                                  >  1:2828395/1‑91 (MQ=255)

                           gTTTAATTACTCTTGAACTACCTTTAACTTAATCTCGAATTTATGATGATTAGCATAAAAATACATCCCATAAAGTTAGTTTTTTAGTCTa                                                                 <  1:642642/91‑1 (MQ=255)

                              tAATTACTCTTGAACTACCTTTAACTTAATCTCGAATTTATGATGCTTAGCATAAAAATACATCCCATAAAGTTAGTTTTTTAGTCTAACt                                                              <  2:5463936/91‑1 (MQ=255)

                              tAATTACTCTTGAACTACCTTTAACTTAATCTCGAATTTATGATGATTAGCATAAAAATACATCCCATAAAGTTAGTTTTTTAGTCTAACt                                                              >  2:1410196/1‑91 (MQ=255)

                              tAATTACTCTTGAACTACCTTTAACTTAATCTCGAATTTATGATGATTAGCATAAAAATACATCCCATAAAGTTAGTTTTTTAGTCTAACt                                                              <  2:4845561/91‑1 (MQ=255)

                               aaTTACTCTTGAACTACCTTTAACTTAATCTCGAATTTATGATGATTAGCATAAAAATACATCCCATAAAGTTAGTTTTTTAGTCTAACtt                                                             <  1:2012735/91‑1 (MQ=255)

                                aTTACTCTTGAACTACCTTTAACTTAATCTCGAATTTATGATGATTAGCATAAAAATACATCCCATAAAGTTAGTTTTTTAGTCTAACttt                                                            >  2:4285313/1‑91 (MQ=255)

                                 ttACTCTTGAACTACCTTTAACTTAATCTCGAATTTATGATGATTAGCATAAAAATACATCCCATAAAGTTAGTTTTTTAGTCTAACTTTc                                                           >  1:1228877/1‑91 (MQ=255)

                                 ttACTCTTGAACTACCTTTAACTTAATCTCGAATTTATGATGATTAGCATAAAAATACATCCCATAAAGATAGTAATTTAGTCTAACTTTc                                                           <  2:3558047/91‑1 (MQ=255)

                                  gaaatagaaatgtcatagcctatttcaaagacaatctccattagaactaagatatgCATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCg                                                          >  2:3851‑M1/57‑91 (MQ=255)

                                   aCTCTTGAACTACCTTTAACTTAATCTCGAATTTATGATGATTAGCATAAAAATACATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCgg                                                         >  1:863132/1‑91 (MQ=255)

                                     tctTGAACTACCTTTAACTTAATCTCGAATTTATGATGATTAGCATAAAAATACATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGa                                                       >  1:1326369/1‑91 (MQ=255)

                                      ctTGAACTACCTTTAACTTAATCTCGAATTTATGATGATTAGCATAAAAATACATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGAt                                                      <  2:4265845/91‑1 (MQ=255)

                                       ttGAACTACCTTTAACTTAATCTCGAATTTATGATGATTAGCATAAAAATACATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGAtt                                                     >  2:2385870/1‑90 (MQ=255)

                                        tGAACTACCTTTAACTTAATCTCGAATTTATGATGATTAGCATAAAAATACATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGc                                                    <  1:2937207/91‑1 (MQ=255)

                                         gAACTACCTTTAACTTAATCTCGAATTTATGATGATTAGCATAAAAATACATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGCa                                                   >  2:3929476/1‑91 (MQ=255)

                                         gAACTACCTTTAACTTAATCTCGAATTTATGATGATTAGCATAAAAATACATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGCa                                                   <  1:1069374/91‑1 (MQ=255)

                                          aaCTACCTTTAACTTAATCTCGAATTTATGATGATTAGCATAAAAATACATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGCat                                                  <  2:1160336/91‑1 (MQ=255)

                                             tACCTTTAACTTAATCTCGAATTTATGATGATTAGCATAAAAATACATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGCATATc                                               >  2:1123150/1‑91 (MQ=255)

                                              aCCTTTAACTTAATCTCGAATTTATGATGATTAGCATAAAAATACATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGCATATCt                                              >  2:3478560/1‑91 (MQ=255)

                                              aCCTTTAACTTAATCTCGAATTTATGATGATTAGAATAAAAATACATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGCATATCt                                              <  2:2980030/91‑1 (MQ=255)

                                               ccTTTAACTTAATCTCGAATTTATGATGATTAGCATAAAAATACATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGCATATCtt                                             >  1:4083860/1‑91 (MQ=255)

                                               ccTTTAACTTAATCTCGAATTTATGATGATTAGCATAAAAATACATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGCATATCtt                                             >  2:4673032/1‑91 (MQ=255)

                                               ccTTTAACTTAATCTCGAATTTATGATGATTAGCATAAAAATACATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGCATATCtt                                             >  1:810438/1‑91 (MQ=255)

                                                 tttAACTTAATCTCGAATTTATGATGATTAGCATAAAAATACATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGCATATCTTAg                                           >  2:785193/1‑91 (MQ=255)

                                                        tAATCTCGAATTTATGATGATTAGCATAAAAATACATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGCATATCTTAGTTCTAAt                                    <  1:3101687/91‑1 (MQ=255)

                                                        tAATCTCGAATTTATGATGATTAGCATAAAAATACATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGCATATCTTAGTTCTAAt                                    >  2:5569626/1‑91 (MQ=255)

                                                        tAATCCCGAATTTATGATGATTAGCATAAAAATACATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGCATATCTTAGTTATAAt                                    >  2:3164754/1‑91 (MQ=255)

                                                         aaTCTCGAATTTATGATGATTAGCATAAAAATACATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGCATATCTTAGTTCTAATg                                   <  2:153346/91‑1 (MQ=255)

                                                         aaTCTCGAATTTATGATGATTAGCATAAAAATACATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGCATATCTTAGTTCTAATg                                   >  1:3946358/1‑91 (MQ=255)

                                                          aTCTCGAATTTATGATGATTAGCATAAAAATACATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGCATATCTTAGTTCTAATgg                                  >  2:4385684/1‑91 (MQ=255)

                                                          aTCTCGAATTTATGATGATTAGCATAAAAATACATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGCATATCTTAGTTCTAATgg                                  >  1:1808936/1‑91 (MQ=255)

                                                          aTCTCGAATTTATGATGATTAGCATAAAAATACATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGCATATCTTAGTTCTAATgg                                  >  1:3894064/1‑91 (MQ=255)

                                                           tctcGAATTTATGATGATTAGCATAAAAATACATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGCATATCTTAGTTCTAATGga                                 <  1:1367549/91‑1 (MQ=255)

                                                           tctcGAATTTATGATGATTAGCATAAAAATACATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGCATATCTTAGTTCTAATGga                                 <  1:3391011/91‑1 (MQ=255)

                                                             tcGAATTTATGATGATTAGCATAAAAATACATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGCATATCTTAGTTCTAATGgaga                               <  1:962117/91‑1 (MQ=255)

                                                              cGAATTTATGATGATTAGCATAAAAATACATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGCATATCTTAGTTCTAATGGAGAt                              >  1:1568589/1‑91 (MQ=255)

                                                               gAATTTATGATGATTAGCATAAAACTACATCCCATACAGTTCGTTTCTGAGTCTAACTCTCGGGATGCATCACGCAGTTCTAATGgaaact                             >  2:3183365/1‑87 (MQ=255)

                                                               gAATTTATGATGATTAGCATAAAAATACATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGCATATCTTAGTTCTAATGGAGAtt                             <  1:2738130/91‑1 (MQ=255)

                                                               gAATTTATGATGATTAGCATAAAAATACATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGCATATCTTAGTTCTAATGGAGAtt                             >  2:1943317/1‑91 (MQ=255)

                                                                  tttATGATGATTAGCATAAAAATACATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGCATATCTTAGTTCTAATGGAGATTGTc                          <  1:2057307/91‑1 (MQ=255)

                                                                  tttATGATGATTAGCATAAAAATACATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGCATATCTTAGTTCTAATGGAGATTGTc                          <  2:2307355/91‑1 (MQ=255)

                                                                  tttATGATGATTAGCATAAAAATACATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGCATATCTTAGTTCTAATGGAGATTGTc                          >  1:2225985/1‑91 (MQ=255)

                                                                    tctgatgaTTCGCATAAAAATACATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGACGCATATCTTAGTTCTAATGGAGATTGTCtt                        <  2:4494321/89‑1 (MQ=255)

                                                                    tATGATGATTAGCATAAAAATACATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGCATATCTTAGTTCGAATGGAGATTGTCtt                        <  2:4590299/91‑1 (MQ=255)

                                                                      tgatgaTTAGCATAAAAATACATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGCATATCTTAGTTCTAATGGAGATTGTCtttt                      >  1:3613861/1‑91 (MQ=255)

                                                                      cgatgatTAGCATAAAAATACATCCCATCAAGTTAGTTTTTTAGTCTAACTTCCGGGATGCATATCTTAGTTCTACTGGAGATTGTCtttt                      >  2:2514255/2‑91 (MQ=255)

                                                                       gatgatTAGCATAAAAATACATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGCTGCATATCTTAGTTCTAATGGAGATTGTCTTTTa                     <  2:3338037/91‑1 (MQ=255)

                                                                       gatgatTAGCATAAAAATACATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGCATATCTTAGTTCTAATGGAGATTGTCTTTTa                     >  1:4282824/1‑91 (MQ=255)

                                                                         tgatTAGCATAAAAATACATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGCATATCTTAGTTCTAATGGAGATTGTCTTTTaaa                   <  1:4365587/91‑1 (MQ=255)

                                                                            ttAGCATAAAAATACATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAg                <  1:4798501/91‑1 (MQ=255)

                                                                             tAGCATAAAAATACATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAgg               >  1:3321410/1‑91 (MQ=255)

                                                                              aGCATAAAAATACATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGCTGCATATCTTAGTTCTAATGGAGATTGTCGTTTAAATAGGc              >  2:5631122/1‑91 (MQ=255)

                                                                              aGCATAAAAATACATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGc              <  2:644467/91‑1 (MQ=255)

                                                                                cATAAAAATACATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTa            >  1:3520012/1‑91 (MQ=255)

                                                                                  tAAAAATACATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATg          <  2:3081052/91‑1 (MQ=255)

                                                                                  tAAAAATACATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGCATATCTTAGTTCTAATGCAGATTGTCTTTTAAATAGGCTATg          <  1:5465233/91‑1 (MQ=255)

                                                                                   aaaaaTACATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGa         <  1:4606450/91‑1 (MQ=255)

                                                                                     aaaTACATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACa       >  1:3451748/1‑91 (MQ=255)

                                                                                     aaaTACATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACa       <  2:5107936/91‑1 (MQ=255)

                                                                                     aaaTACATCCCATAAAGTTAGTTTTATAGTCTAACTTTCGGGATGCATACCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACa       <  2:5228957/91‑1 (MQ=255)

                                                                                       aaaCATCCCATAAAGTTAGTTTTTTCGTCTAACTGTCGGGATGCATGTCTTAGTTCCAATGGAGATTGTCATTTAAATAGGCTATGACAtt     >  2:4717689/3‑91 (MQ=255)

                                                                                       aTACATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGCGATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACAtt     <  1:4658829/91‑1 (MQ=255)

                                                                                        tACATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACAttt    >  2:1644382/1‑91 (MQ=255)

                                                                                         aCATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTc   <  2:3703756/91‑1 (MQ=255)

                                                                                          CATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTCt  <  1:2972127‑M1/91‑1 (MQ=255)

TAAGTATCCTACTATTTTTAATTTATTGTTTAATTACTCTTGAACTACCTTTAACTTAATCTCGAATTTATGATGATTAGCATAAAAATACATCCCATAAAGTTAGTTTTTTAGTCTAACTTTCGGGATGCATATCTTAGTTCTAATGGAGATTGTCTTTTAAATAGGCTATGACATTTCT  >  USA300TCH1516_ALE/2833177‑2833357

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.