| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000731 | 34 = | 387 (0.340) | 44 (0.040) | 16/146 | NT | 8.5% | intergenic (–/‑198) | –/repA | –/replication protein A |
| ? | CP000731 | 65 = | 597 (0.580) | intergenic (–/‑167) | –/repA | –/replication protein A | |||||
Only 100 of 326 total aligned reads displayed.
TTATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTNTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGGGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000731/130‑34‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggggtttGGTAATAAAACGTTTANAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATC > CP000731/65‑154 TTATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTG < 2:728455/91‑1TTATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTG > 2:5506934/1‑91TTATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTG > 1:1518396/1‑91TTATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTG < 2:1351460/91‑1TTATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTG < 1:4121389/91‑1TTATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTG < 1:3923320/91‑1TTATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTG > 2:219992/1‑91TTATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTG > 1:3249596/1‑91TTATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTG < 2:3419149/91‑1 TATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGG < 1:5408231/91‑1 TATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGG < 2:2113060/91‑1 TATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGG < 1:3495205/91‑1 TATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGG > 2:281528/1‑91 TATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGG < 1:1889571/91‑1 TATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACAACGACTATTACCAGTAGTTGG > 2:2035999/1‑91 ATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGG < 1:5282072/91‑1 ATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGG < 2:1295195/91‑1 ATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGG > 1:841651/1‑91 ATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGG < 1:669156/91‑1 ATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGG > 1:585681/1‑91 ATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGG < 1:1962024/91‑1 ATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGG > 1:5105840/1‑91 ATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGG > 1:359181/1‑91 ATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGG > 2:2244208/1‑91 ATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGG > 2:481431/1‑91 ATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGG > 2:4440373/1‑91 ATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGG < 2:3098340/91‑1 ATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGG < 1:2969543/91‑1 ATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGG > 2:3385223/1‑91 ATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGG < 2:3902496/91‑1 TTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGGG > 2:258661/1‑91 TTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGGG < 1:5231602/91‑1 TTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGGG > 1:161872/1‑91 TCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGGGT < 1:5025300/91‑1 CATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGGGTT < 1:2655860/91‑1 CATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGGGTT < 1:4813354/91‑1 CATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGGGTT < 1:4620627/91‑1 CATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGGGTT < 2:1192475/91‑1 CATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGGGTT > 2:1630343/1‑91 CATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGGGTT > 2:5370171/1‑91 CATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGGGTT > 2:4799268/1‑91 ATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGGGTTT > 1:43439/1‑91 ATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGGGTTT > 1:3715787/1‑91 ATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTCTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGGGTTT > 2:3855687/1‑91 CGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGG < 2:4934024/38‑1 ATTACCAAACCCCGACTATTACCAGTAGTTGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTA > 1:1113046/1‑91 CCAAACCCCGACTATTACCAGTGGTTGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATA > 2:4711934/1‑91 CCAAACCCCGACTATTACCAGTAGTTGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATA > 1:4267668/1‑91 CGACTATTACCAGTAGTTGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAA > 1:2444963/1‑91 GACTATTACCAGTAGTTGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAAT > 1:2263922/1‑91 ACTATTACCAGTAGTTGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATA > 1:2223855/1‑91 CTATTACCAGTAGTTGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTATCGATACTTGTATTATATAATGAATAATAT > 2:4135209/1‑91 TATTACCAGTAGTTGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATC > 2:646775/1‑91 ATTACCAGTAGTTGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCT > 2:5011364/1‑91 TTACCAGTAGTTGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGTTACTTGTATTATATAATGAATAATATCTT > 1:4980906/1‑91 TACCAGTAGTTGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTA > 1:4461342/1‑91 TACCAGTAGTTGGGGTTTGGTAATAAAACGATTAGAAACTGTTTATGTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTc > 2:3231001/1‑90 ACCAGTAGTTGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAG > 1:3386133/1‑91 GGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTCTATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACC < 1:1680710/91‑1 GGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACC > 1:4921064/1‑91 GGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACC > 2:3163483/1‑91 GGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACC > 1:5476031/1‑91 GGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACC > 1:3200521/1‑91 GGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACC > 1:2881925/1‑91 GGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACC > 2:2444450/1‑91 GGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACC > 2:2375082/1‑91 GGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACC > 2:5089727/1‑91 GGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACC > 2:4054755/1‑91 GGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACC > 2:3688245/1‑91 GGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACC > 2:1852512/1‑91 GGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACC > 1:4533111/1‑91 GGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACC > 1:2545740/1‑91 GGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACC < 1:863681/91‑1 GGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATGTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGaaac > 2:5482750/1‑87 GGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCT < 2:3779582/91‑1 GGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCT < 1:5581409/91‑1 GGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCT < 2:2120380/91‑1 GGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCT > 2:1046776/1‑91 GGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTA < 2:250119/91‑1 GGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTA < 1:4060284/91‑1 GGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTA < 2:1247556/91‑1 GGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTA > 2:5574831/1‑91 GGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTA < 1:2380463/91‑1 GTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAA < 1:1770558/91‑1 GTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAA < 2:5156935/91‑1 GTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAA < 1:3132235/91‑1 GTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAA < 1:2758721/91‑1 GTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAA < 2:2985944/91‑1 GTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAA > 2:2793291/1‑91 GTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAA < 1:5081841/91‑1 TTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAA < 1:3843893/91‑1 TTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAA < 1:102257/91‑1 TTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAAT < 1:3977368/91‑1 TTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAAT > 1:1369837/1‑91 TGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATC > 2:3188071/1‑91 TGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATC < 1:3567976/91‑1 TGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATC > 2:1449511/1‑91 TGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATC > 1:4569507/1‑91 TGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATC > 1:5644537/1‑91 TGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATC > 2:88210/1‑91 TTATTCATTATATAATACAAGTATCGAAAATTATATAAATAAACAGTTTNTAAACGTTTTATTACCAAACCCCGACTATTACCAGTAGTTGGGGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000731/130‑34‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggggtttGGTAATAAAACGTTTANAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATC > CP000731/65‑154 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |