New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000731 16941 =NA (NA)23 (0.020) 10/148 NT 100% coding (121/675 nt) USA300HOU_pUSA300HOUMR0021 IS431 mec transposase
?CP000731 16948 = 0 (0.000)coding (114/675 nt) USA300HOU_pUSA300HOUMR0021 IS431 mec transposase

Only 100 of 132 total aligned reads displayed.

GATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATC  >  CP000731/16921‑17028
                    |                                                                                       
gATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGCTAGTAGCCAACG                   <  2:3616179‑M2/91‑1 (MQ=255)
gATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACG                   <  2:1728644‑M2/91‑1 (MQ=255)
gATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACG                   >  2:3782487‑M2/1‑91 (MQ=255)
gATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACG                   <  1:2786837‑M2/91‑1 (MQ=255)
gATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACG                   <  1:4776963‑M2/91‑1 (MQ=255)
gATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACG                   >  1:267313‑M2/1‑91 (MQ=255)
gATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACG                   <  2:3423874‑M2/91‑1 (MQ=255)
gATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACG                   <  2:4453502‑M2/91‑1 (MQ=255)
gATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACG                   <  1:2256330‑M2/91‑1 (MQ=255)
gATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACG                   <  2:1172480‑M2/91‑1 (MQ=255)
gATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACG                   <  1:1956625‑M2/91‑1 (MQ=255)
gATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACG                   <  1:757605‑M2/91‑1 (MQ=255)
gATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACG                   <  1:1816839‑M2/91‑1 (MQ=255)
gATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACG                   <  1:1813580‑M2/91‑1 (MQ=255)
gATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACG                   <  2:2680931‑M2/91‑1 (MQ=255)
gATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACG                   >  2:1482200‑M2/1‑91 (MQ=255)
gATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATAATTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACG                   >  2:5638394‑M2/1‑91 (MQ=255)
gATCGTTGAATGATGAACGCTTACACCACGCTCTCTTAATATTTCAGATATATCACGATAGCCCAATGCATAGCTTAGAACGTCGCCAACG                   <  1:5385387‑M2/91‑1 (MQ=255)
 aTCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGG                  >  2:1946372‑M2/1‑91 (MQ=255)
 aTCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGG                  <  1:5084025‑M2/91‑1 (MQ=255)
 aTCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGG                  <  1:496958‑M2/91‑1 (MQ=255)
 aTCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGG                  >  2:3633224‑M2/1‑91 (MQ=255)
 aTCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGG                  <  1:5293860‑M2/91‑1 (MQ=255)
 aTCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGG                  <  1:4098929‑M2/91‑1 (MQ=255)
 aTCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGG                  <  1:2467746‑M2/91‑1 (MQ=255)
 aTCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGG                  >  2:4892483‑M2/1‑91 (MQ=255)
 aTCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGG                  >  2:4964066‑M2/1‑91 (MQ=255)
 aTCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGG                  >  2:1267474‑M2/1‑91 (MQ=255)
  tCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATGTCACGCTAGCTCAATGCATATCTTAGATAGTAGCCAACGGC                 >  1:5581255‑M2/1‑91 (MQ=255)
  tCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATGTCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGC                 >  2:3798376‑M2/1‑91 (MQ=255)
  tCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATCTCACGATAGCTCAATGCATCTCTTCGATAGTAGCCCACGGC                 <  2:5534411‑M2/91‑1 (MQ=255)
  tCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGC                 <  2:1240159‑M2/91‑1 (MQ=255)
  tCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGC                 >  2:1093641‑M2/1‑91 (MQ=255)
  tCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGC                 >  2:3049199‑M2/1‑91 (MQ=255)
  tCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGC                 >  1:793298‑M2/1‑91 (MQ=255)
  tCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGC                 <  1:747253‑M2/91‑1 (MQ=255)
  tCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGC                 <  2:1372778‑M2/91‑1 (MQ=255)
  tCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGC                 >  2:148190‑M2/1‑91 (MQ=255)
  tCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGC                 <  2:1637667‑M2/91‑1 (MQ=255)
  tCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGC                 >  2:2337344‑M2/1‑91 (MQ=255)
  tCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGC                 >  2:2610317‑M2/1‑91 (MQ=255)
  tCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGC                 >  2:282886‑M2/1‑91 (MQ=255)
  tCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGC                 >  1:1118062‑M2/1‑91 (MQ=255)
  tCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGC                 <  2:3169972‑M2/91‑1 (MQ=255)
  tCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGC                 <  2:4044355‑M2/91‑1 (MQ=255)
  tCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGC                 >  2:4221901‑M2/1‑91 (MQ=255)
  tCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGC                 <  2:4440767‑M2/91‑1 (MQ=255)
  tCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGC                 <  2:5190764‑M2/91‑1 (MQ=255)
  tCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGC                 >  2:550679‑M2/1‑91 (MQ=255)
  tCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGC                 >  2:73324‑M2/1‑91 (MQ=255)
  tCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGC                 <  1:4448557‑M2/91‑1 (MQ=255)
  tCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGC                 <  1:271025‑M2/91‑1 (MQ=255)
  tCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGC                 <  1:3460750‑M2/91‑1 (MQ=255)
  tCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGC                 <  1:3461836‑M2/91‑1 (MQ=255)
  tCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGC                 <  1:3539155‑M2/91‑1 (MQ=255)
  tCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGC                 >  1:2553237‑M2/1‑91 (MQ=255)
  tCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGC                 <  1:3391843‑M2/91‑1 (MQ=255)
  tCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGC                 >  1:2956949‑M2/1‑91 (MQ=255)
  tCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGC                 <  1:3887642‑M2/91‑1 (MQ=255)
  tCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGC                 <  1:4131228‑M2/91‑1 (MQ=255)
  tCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGC                 >  1:2238603‑M2/1‑91 (MQ=255)
  tCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGC                 >  1:3182897‑M2/1‑91 (MQ=255)
  tCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGC                 <  1:4632348‑M2/91‑1 (MQ=255)
  tCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGC                 <  1:4947630‑M2/91‑1 (MQ=255)
  tCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGC                 <  1:2028960‑M2/91‑1 (MQ=255)
  tCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGC                 <  1:190129‑M2/91‑1 (MQ=255)
  tCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGC                 >  1:1618207‑M2/1‑91 (MQ=255)
  tCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGC                 <  1:3014509‑M2/91‑1 (MQ=255)
  tCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGC                 <  1:1425405‑M2/91‑1 (MQ=255)
  tCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGC                 >  1:2957216‑M2/1‑91 (MQ=255)
   cGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCT                >  2:3273844‑M2/1‑91 (MQ=255)
   cGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCT                >  2:177144‑M2/1‑91 (MQ=255)
   cGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCT                <  2:3215595‑M2/91‑1 (MQ=255)
   cGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCT                >  2:4037726‑M2/1‑91 (MQ=255)
   cGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCT                >  1:3701402‑M2/1‑91 (MQ=255)
   cGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCT                >  1:2361085‑M2/1‑91 (MQ=255)
   cGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCT                <  2:1276534‑M2/91‑1 (MQ=255)
   cGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCT                <  1:841307‑M2/91‑1 (MQ=255)
   cGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCT                <  1:1086423‑M2/91‑1 (MQ=255)
    gTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCTA               >  1:257023‑M2/1‑91 (MQ=255)
    gTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCTA               >  2:95719‑M2/1‑91 (MQ=255)
    gTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCTA               >  2:4466528‑M2/1‑91 (MQ=255)
    gTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCTA               >  2:2843759‑M2/1‑91 (MQ=255)
    gTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCTA               >  1:5407116‑M2/1‑91 (MQ=255)
    gTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCTA               <  1:4553688‑M2/91‑1 (MQ=255)
    gTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCTA               >  1:5016838‑M2/1‑91 (MQ=255)
     ttGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCTAC              >  2:1351139‑M2/1‑91 (MQ=255)
     ttGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCTAC              <  1:74425‑M2/91‑1 (MQ=255)
     ttGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCTAC              >  1:5453041‑M2/1‑91 (MQ=255)
     ttGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCTAC              <  1:1172839‑M2/91‑1 (MQ=255)
     ttGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCTAC              <  2:5507330‑M2/91‑1 (MQ=255)
     ttGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCTAC              >  2:1009651‑M2/1‑91 (MQ=255)
     ttGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCTAC              >  1:5013192‑M2/1‑91 (MQ=255)
     ttGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCTAC              >  1:319838‑M2/1‑91 (MQ=255)
     ttGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCTAC              <  2:2564038‑M2/91‑1 (MQ=255)
     ttGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCTAC              >  2:3831492‑M2/1‑91 (MQ=255)
     ttGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCTAC              >  1:2713730‑M2/1‑91 (MQ=255)
           gatgaACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCGTTGGCTACtatcta        >  1:3690569‑M2/1‑85 (MQ=255)
            atgaACGTTTACACCACGTGCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCGTTGGCTACtatctaa       >  2:2966053‑M2/1‑84 (MQ=255)
                 cGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCGTTGGCTACtatctaagatat  >  1:3845598‑M2/1‑79 (MQ=255)
                    |                                                                                       
GATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATGCATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATC  >  CP000731/16921‑17028

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.