| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 221178 = | 281 (0.980) | 12 (0.050) | 9/146 | NT | 5.1% | intergenic (‑224/+50) | ipdC/ptsG_1 | Indole‑3‑pyruvate decarboxylase/PTS system glucose‑specific EIICBA component |
| ? | USA300TCH1516_ALE | 221218 = | 195 (0.740) | intergenic (‑264/+10) | ipdC/ptsG_1 | Indole‑3‑pyruvate decarboxylase/PTS system glucose‑specific EIICBA component | |||||
Only 100 of 359 total aligned reads displayed.
GAAGGGGGGCTTTAATTGATGATCTTAAAATTCAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGC > USA300TCH1516_ALE/221088‑221268 | gaaacattacaaaccttgattttaaacaaggtgaacatggcaacatttcatttggcgatcaattatttgaagctaaataatgcttactata > 1:3741603‑M1/91‑91 (MQ=255)gaaacattacaaaccttgattttaaacaaggtgaacatggcaacatttcatttggcgatcaattatttgaagctaaataatgcttactata > 1:4218002‑M1/91‑91 (MQ=255)gAAGGGGGGCTTTAATTGATGATCTTAAAATTCAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGaaaa < 2:1350260/91‑1 (MQ=255) aaacattacaaaccttgattttaaacaaggtgaacatggcaacatttcatttggcgatcaattatttgaagctaaataatgcttactataa > 2:3561551‑M1/90‑91 (MQ=255) aaGGGGGGCTTTAATTGATGATCTTAAAATTCAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGaaaaa < 1:1791054/91‑1 (MQ=255) aaGGGGGGCTTTAATTGATGATCTTAAAATTCAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGaaaaa > 2:5262534/1‑91 (MQ=255) ggggggTATGATTGATGATCTTGAAATTCAAAATTTAAGGGGAGGGCGAACTATCAAGGATGCTGCAAAATACAATAGCAACGAAAAAACa < 2:4753002/91‑1 (MQ=255) ggggCTTTAATTGATGATCTTAAAATTCAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAg < 1:3518627/91‑1 (MQ=255) ggggCTTTAATTGATGATCTTAAAATTCAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAAAAAAAAAAAAACAg < 2:3145806/91‑1 (MQ=255) attacaaaccttgattttaaacaaggtgaacatggcaacatttcatttggcgatcaattatttgaagctaaataatgcttactatAAACAg > 2:4235109‑M1/86‑91 (MQ=255) ttacaaaccttgattttaaacaaggtgaacatggcaacatttcatttggcgatcaattatttgaagctaaataatgcttactatAAACAgg < 2:1125907‑M1/7‑1 (MQ=255) ttacaaaccttgattttaaacaaggtgaacatggcaacatttcatttggcgatcaattatttgaagctaaataatgcttactatAAACAgg < 2:5095791‑M1/7‑1 (MQ=255) gggCTTTAATTGATGATCTTAAAATTCAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAgg > 1:5390167/1‑91 (MQ=255) gggCTTTAATTGATGATCTTAAAATTCAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAgg < 2:1670722/91‑1 (MQ=255) gggCTTTAATTGATGATCTTAAAATTCAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAgg > 2:3718924/1‑91 (MQ=255) gggCTTTAATTGATGATCTTAAAATTCAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAgg > 2:274853/1‑91 (MQ=255) gggCTTTAATTGATGATCTTAAAATTCAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAgg < 2:3371787/91‑1 (MQ=255) ggCTTTAATTGATGATCTTAAAATTCAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGgc < 1:4996495/91‑1 (MQ=255) gCTTTAATTGATGATCTTAAAATTCAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGgcg < 1:494405/91‑1 (MQ=255) gCTTTAATTGATGATCTTAAAATTCAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAACAAAGAAAAAACAGgcg < 2:3490012/91‑1 (MQ=255) cTTTAATTGATGATCTTAAAATTCAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGgcgc > 1:1125646/1‑91 (MQ=255) cTTTAATTGATGATCTTAAAATTCAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGgcgc < 2:1583048/91‑1 (MQ=255) tttAATTGATGATCTTAAAATTCAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGcgcg > 2:1458084/1‑91 (MQ=255) ttAATTGATGATCTTAAAATTCAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGt > 1:3054506/1‑91 (MQ=255) tAATTGATGATCTTAAAATTCAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTc < 1:2467522/91‑1 (MQ=255) aaTTGATGATCTTAAAATTCAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCa < 2:3902073/91‑1 (MQ=255) ttGATGATCTTAAAATTCAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCAcc < 1:2573094/91‑1 (MQ=255) tggatgatCTTAAAATTCAAAATTTAAGGGGAGAGCGAACTATCAATGAGGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCAcc < 2:190383/89‑1 (MQ=255) tCTTAAAATTCAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGaa > 2:5302995/1‑91 (MQ=255) tCTTAAAATTCAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGaa > 1:790857/1‑91 (MQ=255) tCTTAAAATTCAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGaa > 1:1203976/1‑91 (MQ=255) tCTTAAAATTCAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGaa < 2:1835573/91‑1 (MQ=255) acatAAAAGTCAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGaa < 2:5433378/88‑1 (MQ=255) cTTAAAATTCAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAg > 1:2188605/1‑91 (MQ=255) ttAAAATTCAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATATCAAAGAAAAAACAGGCGCGTCACCTTATGAAgg < 1:5606391/91‑1 (MQ=255) ttAAAATTCAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAgg < 1:4697912/91‑1 (MQ=255) ttAAAATTCAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAgg < 2:1231920/91‑1 (MQ=255) ttAAAATTCAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAgg < 1:5256740/91‑1 (MQ=255) ttAAAATTCAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAgg < 1:3383149/91‑1 (MQ=255) tAAAATTCAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGt < 1:2695906/91‑1 (MQ=255) aaaaTTCAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGta > 2:5585664/1‑91 (MQ=255) aaggtgaacatggcaacatttcatttggcgatcaattatttgaagctaaataatgcttactatAAACAGGCGCGTCACCTTATGAAGGtat > 2:5000979‑M1/64‑91 (MQ=255) agtCAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATAc < 2:504423/89‑1 (MQ=255) aTTCAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATAc > 2:2426052/1‑91 (MQ=255) ttCAAAATATAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACg < 2:5153492/91‑1 (MQ=255) aaaaTTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCAc < 2:737273/91‑1 (MQ=255) aaaaTTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCAc < 1:102780/91‑1 (MQ=255) aaaaTTGAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCAc < 2:2617840/91‑1 (MQ=255) aaaTTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGTAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCAcc < 2:4008027/91‑1 (MQ=255) aaaTTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCAcc > 1:4101927/1‑91 (MQ=255) aaaTTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCAcc > 1:2111221/1‑91 (MQ=255) aaTTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCt < 2:4765434/91‑1 (MQ=255) ttAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGtt < 1:5034217/91‑1 (MQ=255) tAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATAAAAAAACAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGttt < 2:245401/91‑1 (MQ=255) aacatttcatttggcgatcaattatttgaagctaaataatgcttactatAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTtat > 1:4642949‑M1/50‑91 (MQ=255) ggggAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTtata > 2:1021609/1‑91 (MQ=255) ggggAGAGCGAACTATCAATGATGCTGCAAAATAAAAAAGAAAAAAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTtata < 2:2814562/91‑1 (MQ=255) gggAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCCAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAg > 2:2976580/1‑91 (MQ=255) gggAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAg > 2:5517472/1‑91 (MQ=255) gagaGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTa < 1:2006896/91‑1 (MQ=255) agCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGAACCTGTTTATAGTAAGc < 1:2923836/91‑1 (MQ=255) gCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCa > 1:4807274/1‑91 (MQ=255) gAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCatt < 1:5150837/91‑1 (MQ=255) gAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCatt < 2:4643090/91‑1 (MQ=255) aaCTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCatta > 1:1839167/1‑91 (MQ=255) aCTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCattat < 2:3641373/91‑1 (MQ=255) cTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCattatt < 1:2637630/91‑1 (MQ=255) tATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTAttt < 1:1415597/91‑1 (MQ=255) tCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAg > 2:4861817/1‑91 (MQ=255) aaTGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCt < 2:2641509/91‑1 (MQ=255) atgCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCaa < 1:2336352/91‑1 (MQ=255) atgCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCaa < 1:2529769/91‑1 (MQ=255) atgCTGCAAAATACAATAGAAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCaa < 2:1088253/91‑1 (MQ=255) tgctgcAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCaaa < 2:2509391/91‑1 (MQ=255) tgctgcAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCaaa > 2:2342833/1‑91 (MQ=255) tgctgcAAAATACAATAGCAAAGAAAAAACAGGCACGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCaaa < 2:3243980/91‑1 (MQ=255) gctgcAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAaat > 1:3228082/1‑91 (MQ=255) ctgcAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAaata < 1:978594/91‑1 (MQ=255) tgcAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAaataa > 1:4413086/1‑91 (MQ=255) gcAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAaataat > 2:4051189/1‑91 (MQ=255) gcAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAaataat > 1:715401/1‑91 (MQ=255) gcAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTAAGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAaataat > 2:5220592/1‑91 (MQ=255) aaaTACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGa > 2:4330748/1‑91 (MQ=255) aaTACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGAt > 1:3459422/1‑91 (MQ=255) tACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCg < 2:2550530/91‑1 (MQ=255) aCAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGc < 1:3841448/91‑1 (MQ=255) aCAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGc < 1:2807058/91‑1 (MQ=255) aaTAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCa > 1:1846275/1‑91 (MQ=255) aaTAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCa > 1:1637931/1‑91 (MQ=255) aTAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCaa > 1:134866/1‑91 (MQ=255) tAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCaaa < 2:4215465/91‑1 (MQ=255) gCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCaaatg < 1:2302259/91‑1 (MQ=255) aaGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCaaatgaaa < 1:3579368/91‑1 (MQ=255) aaGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCaaatgaaa > 1:153195/1‑91 (MQ=255) aGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCaaatgaaat < 2:4414223/91‑1 (MQ=255) gAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCaaatgaaatg > 1:1709805/1‑91 (MQ=255) aaaaaCAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGtt < 1:3882299/91‑1 (MQ=255) aaaaaCAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGtt > 1:2845412/1‑91 (MQ=255) AAACAGGCGCGTTACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGc > 2:2257257‑M1/1‑91 (MQ=255) AAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGc > 2:857995‑M1/1‑91 (MQ=255) | GAAGGGGGGCTTTAATTGATGATCTTAAAATTCAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGC > USA300TCH1516_ALE/221088‑221268 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |