BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	221178 =	281 (0.980)	12 (0.050)	9/146	NT	5.1%	intergenic (‑224/+50)	ipdC/ptsG_1	Indole‑3‑pyruvate decarboxylase/PTS system glucose‑specific EIICBA component
*	?	USA300TCH1516_ALE	221218 =	195 (0.740)	12 (0.050)	9/146	NT	5.1%	intergenic (‑264/+10)	ipdC/ptsG_1	Indole‑3‑pyruvate decarboxylase/PTS system glucose‑specific EIICBA component

Only 100 of 326 total aligned reads displayed.

AAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATCAAGGTTTGTAATGTTTCC  >  USA300TCH1516_ALE/221128‑221308

aaGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTta                                                                                            >  2:2627641/1‑91 (MQ=255)

  ggggAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTtata                                                                                          >  1:1319901/1‑91 (MQ=255)

  ggggAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTtata                                                                                          >  1:4656503/1‑91 (MQ=255)

   gggAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAg                                                                                         >  2:4502365/1‑91 (MQ=255)

   gggAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAg                                                                                         >  2:5517472/1‑91 (MQ=255)

     gagaGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTa                                                                                       <  1:2006896/91‑1 (MQ=255)

      agagCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTaa                                                                                      <  1:217884/91‑1 (MQ=255)

       gagCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAg                                                                                     >  1:4393710/1‑91 (MQ=255)

        catttggcgatctattatttgaagctaaataatgcttactatAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGc                                                                                    >  2:3755190‑M1/43‑91 (MQ=255)

        agCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGc                                                                                    <  1:2803922/91‑1 (MQ=255)

        agCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGAACCTGTTTATAGTAAGc                                                                                    <  1:2923836/91‑1 (MQ=255)

         gCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCa                                                                                   <  1:2326571/91‑1 (MQ=255)

          cGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCat                                                                                  >  1:1899098/1‑91 (MQ=255)

           gAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCatt                                                                                 <  2:2994178/91‑1 (MQ=255)

            aaCTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCatta                                                                                <  2:1735612/91‑1 (MQ=255)

                   aaTGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCt                                                                         >  2:4760095/1‑91 (MQ=255)

                   aaTGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCt                                                                         <  1:1541243/91‑1 (MQ=255)

                   aaTGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCt                                                                         >  2:5046931/1‑91 (MQ=255)

                    atgatgCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCtt                                                                        >  1:3831420/1‑91 (MQ=255)

                     attatttgaagctaaataatgcttactataaacaggtgcgtataccttcataaggtgacgcgcctgtttATAGTAAGCATTATTTAGCTTc                                                                       >  2:3452000‑M2/70‑91 (MQ=255)

                       atgCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCaa                                                                     <  2:3704452/91‑1 (MQ=255)

                       atgCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCaa                                                                     >  2:3575265/1‑91 (MQ=255)

                       atgCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCaa                                                                     <  1:2529769/91‑1 (MQ=255)

                        tgctgcAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCaaa                                                                    <  2:5155083/91‑1 (MQ=255)

                        tgctgcAAAATACAATAGCAAAGAAAAAACAGGCACGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCaaa                                                                    <  2:3243980/91‑1 (MQ=255)

                         gctgcAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAaat                                                                   >  1:3228082/1‑91 (MQ=255)

                          ctgcAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAaata                                                                  <  1:978594/91‑1 (MQ=255)

                          ctgcAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAaata                                                                  >  1:1801828/1‑91 (MQ=255)

                          ctgcAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAaata                                                                  <  1:1527636/91‑1 (MQ=255)

                            gcAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAaataat                                                                <  1:33859/91‑1 (MQ=255)

                            gcAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTAAGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAaataat                                                                >  2:5220592/1‑91 (MQ=255)

                               aaaTACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGa                                                             >  2:4330748/1‑91 (MQ=255)

                                aaTACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGAt                                                            >  1:3459422/1‑91 (MQ=255)

                                  tACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCg                                                          <  2:2550530/91‑1 (MQ=255)

                                    cAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGcc                                                        >  2:4088672/1‑91 (MQ=255)

                                       tAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTGAGCATTATTTAGCTTCAAATAATTGATCGCCaaa                                                     <  2:3362422/91‑1 (MQ=255)

                                        aGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCaaat                                                    <  1:1370827/91‑1 (MQ=255)

                                         gCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGTACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCaaatg                                                   >  2:3601548/1‑91 (MQ=255)

                                          cAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCaaatga                                                  <  1:3877885/91‑1 (MQ=255)

                                             actatATACTGGCGCATCACCTTTTGAGGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCaaatgaaat                                               >  2:2477059‑M1/6‑91 (MQ=255)

                                             aGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCaaatgaaat                                               <  2:4414223/91‑1 (MQ=255)

                                              gAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCaaatgaaatg                                              >  1:1844469/1‑91 (MQ=255)

                                                aaaaaCAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGtt                                            >  1:2592698/1‑91 (MQ=255)

                                                aaaaaCAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGtt                                            <  2:1396178/91‑1 (MQ=255)

                                                  AAACAGGCGCGTTACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGc                                          >  2:2257257‑M1/1‑91 (MQ=255)

                                                  AAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGc                                          <  2:5285973‑M1/91‑1 (MQ=255)

                                                   AACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGcc                                         <  2:929505‑M1/91‑1 (MQ=255)

                                                   AACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGcc                                         <  2:1084890‑M1/91‑1 (MQ=255)

                                                   AACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGcc                                         >  1:60779‑M1/1‑91 (MQ=255)

                                                   AACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGcc                                         <  1:4547253‑M1/91‑1 (MQ=255)

                                                    ACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCa                                        <  1:2461500‑M1/91‑1 (MQ=255)

                                                     CAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCAt                                       <  2:3878331‑M1/91‑1 (MQ=255)

                                                     CAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCAt                                       >  1:394155‑M1/1‑91 (MQ=255)

                                                       GGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGt                                     <  2:1808856‑M1/91‑1 (MQ=255)

                                                       GGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCAGTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGt                                     >  2:4034348‑M1/1‑91 (MQ=255)

                                                       GGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCACTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGt                                     >  2:5480133‑M1/1‑91 (MQ=255)

                                                        GCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGtt                                    <  1:2891151‑M1/91‑1 (MQ=255)

                                                          gcgtataccttcataaggtgacgcgcctgtttATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCa                                  >  2:2952645‑M2/33‑91 (MQ=255)

                                                          gcgTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCa                                  >  2:1587577/1‑91 (MQ=255)

                                                          gcgTCACCTTAAGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCa                                  <  2:5644257/91‑1 (MQ=255)

                                                           cgTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCAc                                 >  1:4310571/1‑91 (MQ=255)

                                                           cctCATCTTATGAAGCGATACGCACCTGTTTATACTAAGCATTATTTAGCTTCAAATAATTGATCGCAAAATGAAATGTTGCCATGTTCAc                                 <  2:1309410/89‑1 (MQ=255)

                                                                ccTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGt                            <  1:4451688/91‑1 (MQ=255)

                                                                 tttATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGtt                           <  2:3080857/90‑1 (MQ=255)

                                                                 ccttcataaggtgacgcgcctgcttATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGtt                           >  2:4830865‑M2/26‑91 (MQ=255)

                                                                 cTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGtt                           >  2:1976968/1‑91 (MQ=255)

                                                                 cTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGtt                           <  1:5247804/91‑1 (MQ=255)

                                                                 cTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGtt                           >  1:5065339/1‑91 (MQ=255)

                                                                 cTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGACAAATGAAATGTTGCCATGTTCACCTTGtt                           >  1:2647579/1‑91 (MQ=255)

                                                                 cTTATGAAGCTATACGCACCTGTTTATAGCAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCAATGTTCACCTTGtt                           >  1:5184378/1‑91 (MQ=255)

                                                                      gAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTaaaa                      <  2:2723272/91‑1 (MQ=255)

                                                                      gAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTaaaa                      <  1:1691849/91‑1 (MQ=255)

                                                                      gAAGGTAGACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTaaaa                      <  2:5390167/91‑1 (MQ=255)

                                                                         ggTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATCa                   >  1:269758/1‑91 (MQ=255)

                                                                         ggTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATCa                   <  2:2369631/91‑1 (MQ=255)

                                                                          gTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATCaa                  <  1:4847993/91‑1 (MQ=255)

                                                                           tataCGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATCAAg                 <  1:3124852/91‑1 (MQ=255)

                                                                           tataCGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATCAAg                 >  2:70216/1‑91 (MQ=255)

                                                                           tataCGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATCAAg                 <  1:1752783/91‑1 (MQ=255)

                                                                             taCGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATCAAGGt               >  1:672343/1‑91 (MQ=255)

                                                                               cGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATCAAGGttt             >  2:1232841/1‑91 (MQ=255)

                                                                                gCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATCAAGGTTTg            >  2:5571844/1‑91 (MQ=255)

                                                                                gCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATCAAGGTTTg            <  2:4912340/91‑1 (MQ=255)

                                                                                gCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATCAAGGTTTg            >  1:1130556/1‑91 (MQ=255)

                                                                                gCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATCAAGGTTTg            >  1:3567502/1‑91 (MQ=255)

                                                                                 cACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATCAAGGTTTGt           <  2:2788146/91‑1 (MQ=255)

                                                                                 cACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATCAAGGTTTGt           <  1:3657330/91‑1 (MQ=255)

                                                                                   cctgtttATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATCAAGGTTTGTaa         <  2:1125626‑M2/84‑1 (MQ=255)

                                                                                   cctgtttATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATCAAGGTTTGTaa         <  1:839963‑M2/84‑1 (MQ=255)

                                                                                   cctgtttATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATCAAGGTTTGTaa         >  1:4638416‑M2/8‑91 (MQ=255)

                                                                                    ctgtttATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATCAAGGTTTGTAAt        >  2:4235109‑M2/7‑91 (MQ=255)

                                                                                    ctgtttATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATCAAGGTTTGTAAt        >  2:837338‑M2/7‑91 (MQ=255)

                                                                                     tgtttATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAGTGTTGCCATGTTCACCTTGTTTAAAATCAAGGTTTGTAATg       <  1:5585664‑M2/86‑1 (MQ=255)

                                                                                     tgtttATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATCAAGGTTTGTAATg       >  1:5364113‑M2/6‑91 (MQ=255)

                                                                                     tgtttATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATCAAGGTTTGTAATg       <  1:2843512‑M2/86‑1 (MQ=255)

                                                                                     tgtttATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATCAAGGTTTGTAATg       <  1:2293896‑M2/86‑1 (MQ=255)

                                                                                         tATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATCAAGGTTTGTAATGTTTc   >  1:4218002‑M2/2‑91 (MQ=255)

                                                                                         tATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATCAAGGTTTGTAATGTTTc   >  1:3741603‑M2/2‑91 (MQ=255)

                                                                                          ataGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATCAAGGTTTGTAATGTTTcc  <  1:3343590/91‑1 (MQ=255)

                                                                                          ataGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATCAAGGTTTGTAATGTTTcc  <  1:1066425/91‑1 (MQ=255)

AAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGCGCGTCACCTTATGAAGGTATACGCACCTGTTTATAGTAAGCATTATTTAGCTTCAAATAATTGATCGCCAAATGAAATGTTGCCATGTTCACCTTGTTTAAAATCAAGGTTTGTAATGTTTCC  >  USA300TCH1516_ALE/221128‑221308

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.