| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 365040 | 246 (0.860) | 15 (0.060) | 10/136 | NT | 6.4% | intergenic (+50/+55) | nupC_1/sglT | Nucleoside permease NupC/Sodium/glucose cotransporter |
| ? | USA300TCH1516_ALE | = 365070 | 233 (0.960) | intergenic (+80/+25) | nupC_1/sglT | Nucleoside permease NupC/Sodium/glucose cotransporter | |||||
Only 100 of 445 total aligned reads displayed.
CTTCAATCATTTCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGA > USA300TCH1516_ALE/364950‑365130 | gggattaacaatttttgaaaaagataaaccatcaacatacatttcaaaaacggctacgaaaaagtagattgttatgataAAACCCCGTCAc < 2:2048064‑M1/12‑1 (MQ=255) ttCAATCATTTCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCAcc < 2:1936324/91‑1 (MQ=255) aaTCATTTCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAg > 1:4673636/1‑91 (MQ=255) aacaatttttgaaaaagataaaccatcaacatacatttcaaaaacggctacgaaaaagtagattgttatgataAAACCCCGTCACCAAGtt < 1:1609713‑M1/18‑1 (MQ=255) tttCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGgc < 1:1902459/91‑1 (MQ=255) ttCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGgcg > 1:3315246/1‑91 (MQ=255) ttCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGgcg > 1:413459/1‑91 (MQ=255) ttCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGgcg < 1:497039/91‑1 (MQ=255) aGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCaa > 1:3192780/1‑91 (MQ=255) ggATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAAc > 2:2376427/1‑91 (MQ=255) tcaatcaTTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAgc < 2:1328224/91‑1 (MQ=255) caatcaTTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAgcg < 2:388200/91‑1 (MQ=255) caatcaTTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAgcg > 1:3545300/1‑91 (MQ=255) aatcaTTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAgcgc > 1:918808/1‑91 (MQ=255) tcaTTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAACTTCATGGAAAAGCTAAACCCCGTCACTAAGTTGGCGCAACAGCGcat > 2:3524945/1‑91 (MQ=255) tcaTTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGcat < 1:5131011/91‑1 (MQ=255) tcaTTGGATTAGTAGTGTAAATGAATCGGACTACATAAATGAGATTCATGGCAGAGCTAATCCCCGTCACCAAGTTGGCGCAACAGCGcat < 2:2496965/91‑1 (MQ=255) aTTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGcatca > 1:1511740/1‑91 (MQ=255) ttGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGcatcat < 1:3461800/91‑1 (MQ=255) gCTTAGTATTGTAAATGAATCGAAGTACCTTAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAAc < 1:4357261/91‑1 (MQ=255) ccatcaacatacatttcaaaaacggctacgaaaaagtagattgttatgataAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACt > 1:4507173‑M1/52‑91 (MQ=255) cTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACtaagttatgatgcgctgttgcgccaact < 1:1448384‑M1/91‑29 (MQ=255) ttAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACtt < 2:4811009/91‑1 (MQ=255) cagcaacatacatttcaaaaacggctacgaaaaagtagattgttatgataAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACtt > 2:1777793‑M1/51‑91 (MQ=255) tAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTa > 1:1253939/1‑91 (MQ=255) aGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAg < 1:2062548‑M2/91‑2 (MQ=255) tATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTCAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAgtg < 2:4636586‑M2/91‑4 (MQ=255) tATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAgtg > 2:3231489‑M2/1‑88 (MQ=255) aTTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACtaagttatgatgcgctgttgcgccaacttggtga < 1:3844922‑M1/91‑35 (MQ=255) tGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAgtgacg < 2:2407946‑M2/91‑7 (MQ=255) gTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCGCCAAGTTGGCGCAACAGCGCATCATAACTTAgtgacgg > 2:2760602‑M2/1‑84 (MQ=255) gTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGTCGCAACAGCGCATCATAACTTAgtgacgg < 2:2589132‑M2/91‑8 (MQ=255) gTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAgtgacgg < 2:2077381‑M2/91‑8 (MQ=255) gTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAgtgacgg > 1:1194714‑M2/1‑84 (MQ=255) gTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAgtgacgg < 2:712091‑M2/91‑8 (MQ=255) tAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAgtgacggg < 2:1408963‑M2/91‑9 (MQ=255) tAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAgtgacggg < 1:2380792‑M2/91‑9 (MQ=255) aaaTGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACtaagttatgatgcgctgttgcgccaacttggtgacgggg < 1:1128898‑M1/91‑40 (MQ=255) tCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATc > 1:1003268/1‑91 (MQ=255) tCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATc < 2:2544967/91‑1 (MQ=255) tCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCACGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATc > 1:5420037/1‑91 (MQ=255) cGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCa > 2:582679/1‑91 (MQ=255) cGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCa > 1:5024551/1‑91 (MQ=255) cGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCa > 1:1350773/1‑91 (MQ=255) gAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCAt < 2:3122081/91‑1 (MQ=255) gAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCAt < 1:57339/91‑1 (MQ=255) aaGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATa < 1:3986875/91‑1 (MQ=255) aGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATaa > 2:452524/1‑91 (MQ=255) gTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAAc > 1:2637164/1‑91 (MQ=255) aCCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACaa < 2:4850899/91‑1 (MQ=255) aCCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACaa < 2:5119247/91‑1 (MQ=255) ccTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAAt > 1:534598/1‑91 (MQ=255) cTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGCTTTATCATAACAATc > 2:1085933/1‑91 (MQ=255) aaattaaattCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTa < 1:971601/91‑1 (MQ=255) aattaaattCATGGCAAAGCTAAACCCCGTCACtaagttatgatgcgctgttgcgccaacttggtgacggggtttagctttgccatgaatt < 1:4773976‑M1/91‑59 (MQ=255) aattaaattCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTAc < 1:5184154/91‑1 (MQ=255) ttaaattCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACtt > 1:3059997/1‑91 (MQ=255) ttaaattCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACtt > 1:2927120/1‑91 (MQ=255) ttaaattCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACtt > 2:1520773/1‑91 (MQ=255) ttaaattCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACtt < 2:1626574/91‑1 (MQ=255) taaattCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACttt < 1:551660/91‑1 (MQ=255) taaattCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACttt < 2:1844398/91‑1 (MQ=255) aattCATGGCAAAGCTAAACCCCGTCACCAAGTCGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAGTCTACttttt > 1:5630612/1‑91 (MQ=255) attCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTc > 1:802345/1‑91 (MQ=255) ttCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCg > 1:3714752/1‑91 (MQ=255) tCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGt > 2:2822194/1‑91 (MQ=255) cATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTa < 1:2711573/91‑1 (MQ=255) cATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTa > 1:4595615/1‑91 (MQ=255) cATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTa > 1:761476/1‑91 (MQ=255) aTGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAg < 2:5599390/91‑1 (MQ=255) gCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCg < 2:753228/91‑1 (MQ=255) cAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGt > 2:1034047/1‑91 (MQ=255) cAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGt > 2:2971060/1‑91 (MQ=255) aaaGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGtt > 1:1012120/1‑91 (MQ=255) tAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGa < 2:2906071/91‑1 (MQ=255) AAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGaa > 1:1746264‑M1/1‑91 (MQ=255) aaCCCCGTCACtaagttatgatgcgctgttgcgccaacttggtgacggggtttagctttgccatgaatttaatttaggtacttcgattcat > 2:222543‑M1/1‑11 (MQ=255) aaCCCCGTCACtaagttatgatgcgctgttgcgccaacttggtgaaggggtttagctttgccattaatctaatttgggtacttcgattcat > 2:5551220‑M1/1‑11 (MQ=255) AACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGaaa < 1:620957‑M1/91‑1 (MQ=255) AACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGaaa < 1:4817559‑M1/91‑1 (MQ=255) aCCCCGTCACtaagttatgatgcgctgttgcgccaacttggtgacggggtttagctttgccatgaatttaatttaggtacttcgattcatt > 1:2087092‑M1/1‑10 (MQ=255) ACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAat > 2:5315862‑M1/1‑91 (MQ=255) ACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAat < 2:4019377‑M1/91‑1 (MQ=255) CCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAatg > 1:230949‑M1/1‑91 (MQ=255) CCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAatg > 1:3614317‑M1/1‑91 (MQ=255) CCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAatg < 1:1675106‑M1/91‑1 (MQ=255) cccGTCACtaagttatgatgcgctgtttcgccaacttggtgacggggtttagctttgccatgaatttaatttcggtacttcgattcatttc > 2:647055‑M1/1‑8 (MQ=255) cccGTCACtaagttatgatgcgctgttgcgccaacttggtgacggggtttagctttgccatgaatttaatttaggtacttcgattcattta > 1:5091913‑M1/1‑8 (MQ=255) ccGTCACtaagttatgatgcgctgttgcgccaacttggtgacggggtttagctttgccatgaatttaatttaggtacttcgattcatttac < 2:1263274‑M1/91‑85 (MQ=255) ccGTCACtaagttatgatgcgctgttgcgccaacttggtgacggggtttagctttgccatgaatttaatttaggtacttcgattcatttac > 1:324780‑M1/1‑7 (MQ=255) ccGTCACtaagttatgatgcgctgttgcgccaacttggtgacggggtttagctttgccatgaatttaatttaggtacttcgattcatttac > 2:3452939‑M1/1‑7 (MQ=255) ccGTCACtaagttatgatgcgctgttgcgccaacttggtgacgggatttagcttttccatgaatttaatttaggtacttcgattcatttac < 2:5437971‑M1/91‑85 (MQ=255) CGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAatgtat < 2:4085794‑M1/91‑1 (MQ=255) GTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGTGTTTTATCATAACAATCTACTTTTTCGTAGGCGTTTTTGAAatgtatg > 1:5484378‑M1/1‑91 (MQ=255) TCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAatgtatgt < 2:497449‑M1/91‑1 (MQ=255) cACtaagttatgatgcgctgttgcgccaacttggtgacggggtttagctttgccatgaatttaatttaggtacttcgattcatttacaata > 2:5302653‑M1/1‑3 (MQ=255) CACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGtt < 1:2846294‑M1/91‑1 (MQ=255) ctaagttatgatgcgctgttgcgccaacttggtgacggggtttagctttgccatgaatttaatttaggtacttcgattcatttacaatact < 1:358252‑M1/91‑91 (MQ=255) CCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGa > 1:3170140‑M1/1‑91 (MQ=255) CCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGa < 1:3763933‑M1/91‑1 (MQ=255) | CTTCAATCATTTCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGA > USA300TCH1516_ALE/364950‑365130 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |