BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1657692	205 (0.710)	10 (0.040)	9/130	NT	5.0%	intergenic (‑15/+37)	comGA/USA300HOU_RS08250	ComG operon protein 1/putative metallo‑hydrolase
*	?	USA300TCH1516_ALE	= 1657702	210 (0.900)	10 (0.040)	9/130	NT	5.0%	intergenic (‑25/+27)	comGA/USA300HOU_RS08250	ComG operon protein 1/putative metallo‑hydrolase

Only 100 of 365 total aligned reads displayed.

AACTGGAATAAAATGTACATCACTCGCTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACAT‑ATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTAAAAATGGATTTAATTGTTCATCATCAACCGTCGTATATGGACC  >  USA300TCH1516_ALE/1657603‑1657782

aaCTGGAATAAAATGTACATCACTCGCTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACa                                                                                            >  1:3431344/1‑91 (MQ=255)

aaCTGGAATAAAATGTACATCACTCGCTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACa                                                                                            <  1:1419147/91‑1 (MQ=255)

aaCTGGAATAAAATGTACATCACTCGCTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACa                                                                                            <  2:2846559/91‑1 (MQ=255)

aaCTGGAATAAAATGTACATCACTCGCTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACa                                                                                            >  2:4754567/1‑91 (MQ=255)

 aCTGGAATAAAATGTACATCACTCGCTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACat                                                                                           <  1:3321810/91‑1 (MQ=255)

 aCTGGAATAAAATGTACATCACTCGCTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACat                                                                                           <  2:2142504/91‑1 (MQ=255)

 aCTGGAATAAAATGTACATCACTCGCTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACat                                                                                           >  2:54882/1‑91 (MQ=255)

  cTGGAATCAAATGTACGTCACTCGCTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAGTCTTCAAAAAAACACCTCCTACat‑a                                                                                         <  2:5381634/91‑1 (MQ=255)

  cTGGAATAAAATGTACATCACTCGCTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACat‑a                                                                                         >  1:3960110/1‑91 (MQ=255)

  cTGGAATAAAATGTACATCACTCGCTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACat‑a                                                                                         <  2:3319041/91‑1 (MQ=255)

  cTGGAATAAAATGTACATCACTCGCTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACat‑a                                                                                         <  1:4778710/91‑1 (MQ=255)

    ttaaTAAAATGTACATCACTCGCTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACAt‑ata                                                                                       >  2:4319304/3‑91 (MQ=255)

     gAATAAAATGTACATCACTCGCTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTAAAAAAAACACCTCCTACAT‑ATaa                                                                                      <  2:1859224/91‑1 (MQ=255)

       aTAAAATGTACATCTCTCGCTTTCATTTCTATCGCTTTATTGATTATTTCTTGAAATAGAAGCTTCAAAAAAACTCCTCCTGCAT‑ATAATc                                                                                    <  1:5188170/91‑1 (MQ=255)

        tAAAGTGTACATCACTCGCTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACAT‑ATAATCa                                                                                   <  1:1268075/91‑1 (MQ=255)

        tAAAATGTACATCACTCGCTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACgtgattata                                                                                    <  1:886605‑M1/91‑10 (MQ=255)

         aaaaTGTACATCACTCGCTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACAT‑ATAATCAc                                                                                  <  1:2566127/91‑1 (MQ=255)

          aaaTGTACATCACTCGCTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACAT‑ATAATCACg                                                                                 >  1:3469899‑M2/1‑90 (MQ=255)

           aaTGTACATCACTCGCTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACAT‑ATAATCACgt                                                                                >  2:25627‑M2/1‑89 (MQ=255)

            aTGTACATCACTCGCTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACAT‑ATAATCACgta                                                                               <  1:4535789‑M2/91‑4 (MQ=255)

            aTGTACATCACTCGCTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACAT‑ATAATCACgta                                                                               <  2:294564‑M2/91‑4 (MQ=255)

            aTGTACATCACTCGCTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACAT‑ATAATCACgta                                                                               <  1:1745796‑M2/91‑4 (MQ=255)

            aTGTACATCACTCGCTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACAT‑ATAATCACgta                                                                               <  1:2723303‑M2/91‑4 (MQ=255)

             tGTACATCACTCGCTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACAT‑ATAATCACgtag                                                                              >  1:2652345‑M2/1‑87 (MQ=255)

              gTACATCACTCGCTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACAT‑ATAATCACgtagg                                                                             <  2:661514‑M2/91‑6 (MQ=255)

              gTACATCACTCGCTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACAT‑ATAATCACgtagg                                                                             >  2:705922‑M2/1‑86 (MQ=255)

              gTACATCACTCGCTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACAT‑ATAATCACgtagg                                                                             <  2:224994‑M2/91‑6 (MQ=255)

                aCATCACTCGCTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACAT‑ATAATCACgtaggag                                                                           <  1:3541921‑M2/91‑8 (MQ=255)

                 cATCACTCGCTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACAT‑ATAATCACgtaggagg                                                                          >  1:4125902‑M2/1‑83 (MQ=255)

                 cATCACTCGCTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACAT‑ATAATCACgtaggagg                                                                          >  1:3034551‑M2/1‑83 (MQ=255)

                  aTCACTCGCTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACgtgattatatgtaggaggt                                                                          <  1:2488366‑M1/91‑20 (MQ=255)

                   tCACTCGCTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACgtgattatatgtaggaggtg                                                                         <  2:515042‑M1/91‑21 (MQ=255)

                   tCACTCGCTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACAT‑ATAATCACgtaggaggtg                                                                        >  1:3195987‑M2/1‑81 (MQ=255)

                    cACTCGCTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACgtgattatatgtaggaggtgt                                                                        >  1:3919534‑M1/1‑70 (MQ=255)

                    cACTCGCTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACAT‑ATAATCACgtaggaggtgt                                                                       >  2:4583960‑M2/1‑80 (MQ=255)

                          cTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACAT‑ATAATCACGTAGGAGGTGTTTttat                                                                 <  1:3618733/91‑1 (MQ=255)

                            ttCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACAT‑ATAATCACGTAGGAGGTGTTTttattc                                                               >  2:4785498/1‑90 (MQ=255)

                             tCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACAT‑ATAATCACGTAGGAGGTGTTTTTATTAc                                                              >  1:646609/1‑91 (MQ=255)

                                tttCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACAT‑ATAATCACGTAGGAGGTGTTTTTATTACTTc                                                           >  1:2503339/1‑91 (MQ=255)

                                tttCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACAT‑ATAATCACGTAGGAGGTGTTTTTATTACTTc                                                           <  1:2223685/91‑1 (MQ=255)

                                tttCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACAT‑ATAATCACGTAGGAGGTGTTTTTATTACTTc                                                           >  1:4999785/1‑91 (MQ=255)

                                   cTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACAT‑ATAATCACGTAGTAGGTGTTTTTATTACTTCAAt                                                        >  2:2753859/1‑91 (MQ=255)

                                   cTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACAT‑ATAATCACGTAGGAGGTGTTTTTATTACTTCAAt                                                        <  1:5084543/91‑1 (MQ=255)

                                      tCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACAT‑ATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTa                                                     >  1:92176/1‑91 (MQ=255)

                                        gCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACAT‑ATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAAc                                                   >  1:209059/1‑91 (MQ=255)

                                          tgtattaATTATTTCTTGAAATAGAATCGTCAAAAAAACACCTCCTACAT‑ATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCg                                                 <  2:2068968/89‑1 (MQ=255)

                                              ttaattaTTTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACAT‑ATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTa                                             <  1:117881/91‑1 (MQ=255)

                                                  ttattTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACAT‑ATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTaaaaa                                         >  2:306463/1‑91 (MQ=255)

                                                  ttattTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACAT‑ATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTaaaaa                                         >  2:1137180/1‑91 (MQ=255)

                                                  ttattTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACAT‑ATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTaaaaa                                         >  2:564284/1‑91 (MQ=255)

                                                  ttattTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACAT‑ATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTaaaaa                                         <  1:5267897/91‑1 (MQ=255)

                                                   tattTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACGTGATTAT‑ATgtaggaggtgtttttttgaagattctatttcaagaaataatt                                        >  1:1428879‑M2/1‑49 (MQ=255)

                                                    attTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACAT‑ATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTAAAAATg                                       <  1:1989216/91‑1 (MQ=255)

                                                     tttCTTGAAATAGAATCTTCAAAAAAACACCTCCTACAT‑ATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTAAAAATgg                                      >  1:4956931/1‑91 (MQ=255)

                                                      ttCTTGAAATAGAATCTTCAAAAAAACACCTCCTACAT‑ATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTAAAAATGGa                                     <  1:1040636/91‑1 (MQ=255)

                                                       tCTTGAAATAGAATCTTCAAAAAAACACCTCCTACAT‑ATAATCACGTAGGAGGTGTTTTTCTTACTTCAATTTAACCGTGTAAAAATGGAt                                    >  1:4353837/1‑91 (MQ=255)

                                                       tCTTGAAATAGAATCTTCAAAAAAACACCTCCTACAT‑ATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTAAAAATGGAt                                    <  2:5188927/91‑1 (MQ=255)

                                                       tCTTGAAATAGAATCTTCAAAAAAACACCTCCTACAT‑ATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTAAAAATGGAt                                    >  2:3126351/1‑91 (MQ=255)

                                                        cTTGAAATAGAATCTTCAAAAAAACACCTCCTACAT‑ATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTAAAAATGGAtt                                   <  2:4042829/91‑1 (MQ=255)

                                                         ttGAAATAGAATCTTCAAAAAAACACCTCCTACatataatcacgtaggaggtgttttcttgaagcttctatttcaagaaataattaataaa                                   >  2:1750436‑M1/1‑33 (MQ=255)

                                                         ttGAAATAGAATCTTCAAAAAAACACCTCCTACAT‑ATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTAAAAATGGAttt                                  >  2:1499876/1‑91 (MQ=255)

                                                         ttGAAATAGAATCTTCAAAAAAACACCTCCTACAT‑ATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTAAAAATGGAttt                                  <  2:2503339/91‑1 (MQ=255)

                                                          tGAAATAGAATCTTCAAAAAAACACCTCCTACAT‑ATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTAAAAATGGATTTa                                 >  1:2335351/1‑91 (MQ=255)

                                                                aGAATCTTCAAAAAAACACCTCCTACAT‑ATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTAAAAATGGATTTAATTGtt                           >  2:4103312/1‑91 (MQ=255)

                                                                   aTCTTCAAAAAAACACCTCCTACAT‑ATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTAAAAATGGATTTAATTGTtcat                        >  1:334285/1‑91 (MQ=255)

                                                                    tCTTCAAAAAAACACCTCCTACAT‑ATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTAAAAATGGATTTAATTGTtcatc                       <  2:2993122/91‑1 (MQ=255)

                                                                    tCTTCAAAAAAACACCTCCTACAT‑ATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTAAAAATGGATTTAATTGTtcatc                       <  1:3821662/91‑1 (MQ=255)

                                                                     cTTCAAAAAAACACCTCCTACAT‑ATAATCACATAGGAGGTGTTTTTATTACTTCAAAAAAAAAAAAAAAAAATGGATTTAATTGTtcatca                      <  2:2662548/91‑1 (MQ=255)

                                                                       tCAAAAAAACACCTCCTACAT‑ATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTAAAAATGGATTTAATTGTtcatcatc                    >  1:4598306/1‑91 (MQ=255)

                                                                       tCAAAAAAACACCTCCTACAT‑ATAATCACGTAGGAGGTGTTTTTATTACTTCAATATAAAAGAGTAAAAATGGATTTAATTGTtcatcatc                    <  2:3864976/91‑1 (MQ=255)

                                                                         aaaaaaaCACCTCCTACAT‑ATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTAAAAATGGATTTAATTGTTCATCATCaa                  <  2:776100/91‑1 (MQ=255)

                                                                         aaaaaaaCACCTCCTACAT‑ATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTAAAAATGGATTTAATTGTTCATCATCaa                  <  1:3077157/91‑1 (MQ=255)

                                                                             aaaCACCTCCTACgtgattatatgtaggaggtgtttttttgaagattctatttcaagaaataattaataaagcgatagaaatgaaagcgag               >  2:2468661‑M1/1‑13 (MQ=255)

                                                                             aaaCACCTCCTACgtgattatatgtaggaggtgtttttttgaagattctatttcaagaaataattaataaagcgatagaaatgaaagcgag               >  1:3297456‑M1/1‑13 (MQ=255)

                                                                             aaaCACCTCCTACgtgattatatgtaggaggtgtttttttgaagattctatttcaagaaataattaataaagcgatagaaatgaaagcgag               >  1:2843595‑M1/1‑13 (MQ=255)

                                                                             aaaCACCTCCTACAT‑ATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTAAAAATGGATTTAATTGTTCATCATCAACcgt              <  2:50095/91‑1 (MQ=255)

                                                                               acacCTCCTACgtgattatatgtaggaggtgtttttttgaagattctatttcaagaaataattaataaagcgatagaaatgaaagcgagtg             >  2:918772‑M1/1‑11 (MQ=255)

                                                                               acacCTCCTACgtgattatatgtaggaggtgtttttttgaagattctatttcaagaaataattaataaagcgatagaaatgaaagcgagtg             <  1:2168434‑M1/91‑81 (MQ=255)

                                                                               acacCTCCTACgtgattatatgtaggaggtgtttttttgaagattctatttcaagaaataattaataaagcgatagaaatgaaagcgagtg             >  2:4583860‑M1/1‑11 (MQ=255)

                                                                               acacCTCCTACgtgattatatgtaggaggagtttttttgaagattctatttcaagaaataattaataaagcgatagaaatgaaaccgagtg             >  2:4011925‑M1/1‑11 (MQ=255)

                                                                               acacCTCCTACAT‑ATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTAAAAATGGATTTAATTGTTCATCATCAACcgtcg            <  1:5555733/91‑1 (MQ=255)

                                                                                cacCTCCTACAT‑ATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTAAAAATGGATTTAATTGTTCATCATCAACcgtcgt           >  2:1987412/1‑91 (MQ=255)

                                                                                 acCTCCTACgtgattatatgtaggaggtgtttttttgaagattctatttcaagaaataattaataaagcgatagaaatgaaagcgagtgat           >  1:4539341‑M1/1‑9 (MQ=255)

                                                                                 acCTCCTACAT‑ATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTAAAAATGGATTTAATTGTTCATCATCAACCGTCGta          >  1:182297/1‑91 (MQ=255)

                                                                                 acCTCCTACAT‑ATAATCACGTAGGAGGTGTTTTTATTACTTCAATATAACCGTGTAAAAATGGATTTAATTGTTCATCATCAACCgtagta          >  2:5118950/1‑91 (MQ=255)

                                                                                  cctcctACgtgattatatgtaggaggtgtttttttgaagattcgatttcaagaaataattaataaagcgatagaaatgaaagcgagtgatg          >  1:4399256‑M1/1‑8 (MQ=255)

                                                                                  cctcctACAT‑ATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTAAAAATGGATTTAATTGTTCATCATCAACCGTCGtat         <  2:2189347/91‑1 (MQ=255)

                                                                                   ctcctACAT‑ATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTAAAAATGGATTTAATTGTTCATCATCAACCGTCGtata        >  1:2987974/1‑91 (MQ=255)

                                                                                   ctcctACAT‑ATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTAAAAATGGATTTAATTGTTCATCATCAACCGTCGtata        >  1:2889084/1‑91 (MQ=255)

                                                                                    tcctACgtgattatatgtaggaggtgtttttttgaagattctatttcaagaaataattaataaagcgatagaaatgaaagcgagtgatgta        >  1:1701681‑M1/1‑6 (MQ=255)

                                                                                    tcctACAT‑ATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTAAAAATGGATTTAATTGTTCATCATCAACCGTCGTatat       >  1:809666/1‑91 (MQ=255)

                                                                                     cctACAT‑ATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTAAAAATGGATTTAATTGTTCATCATCAACCGTCGTATATg      >  1:2298352/1‑91 (MQ=255)

                                                                                      ctACgtgattatatgtaggaggtgtttttttgaagattctatttcaagaaataattaataaagcgatagaaatgaaagcgagtgatgtaca      <  1:963751‑M1/91‑88 (MQ=255)

                                                                                       tACAT‑ATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTAAAAATGGATTTAATTGTTCATCATCAACCGTCGTATATGGa    >  1:3016305/1‑91 (MQ=255)

                                                                                       tACAT‑ATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTAAAAATGGATTTAATTGTTCATCATCAACCGTCGTATATGGa    >  1:398515/1‑91 (MQ=255)

                                                                                        aCgtgattatatgtaggaggtgtttttttgaagattctatttcaagaaataattaataaagcgatagaaatgaaagcgagtgatgtacatt    <  1:1330582‑M1/91‑90 (MQ=255)

                                                                                        aCgtgattatatgtaggaggtgtttttttgaagattctatttcaagaaataattaataaagcgatagaaatgaaagcgagtgatgtacatt    >  2:1342608‑M1/1‑2 (MQ=255)

                                                                                        aCAT‑ATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTAAAAATGGATTTAATTGTTCATCATCAACCGTCGTATATGGAc   <  1:1223923/91‑1 (MQ=255)

                                                                                         cAT‑ATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTAAAAATGGATTTAATTGTTCATCATCAACCGTCGTATATGGAcc  <  2:1105973/91‑1 (MQ=255)

                                                                                         cAT‑ATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTAAAAATGGATTTAATTGTTCATCATCAACCGTCGTATATGGAcc  <  2:3931061/91‑1 (MQ=255)

AACTGGAATAAAATGTACATCACTCGCTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACAT‑ATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTAAAAATGGATTTAATTGTTCATCATCAACCGTCGTATATGGACC  >  USA300TCH1516_ALE/1657603‑1657782

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.