BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1657692	205 (0.710)	10 (0.040)	9/130	NT	5.0%	intergenic (‑15/+37)	comGA/USA300HOU_RS08250	ComG operon protein 1/putative metallo‑hydrolase
*	?	USA300TCH1516_ALE	= 1657702	210 (0.900)	10 (0.040)	9/130	NT	5.0%	intergenic (‑25/+27)	comGA/USA300HOU_RS08250	ComG operon protein 1/putative metallo‑hydrolase

Only 100 of 308 total aligned reads displayed.

AAAATGTACATCACTCGCTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACATATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTAAAAATGGATTTAATTGTTCATCATCAACCGTCGTATATGGACCATGTCCAGGG  >  USA300TCH1516_ALE/1657612‑1657792

 aaaTGTACATCACTCGCTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAACACACCTCCTACATATAATCACg                                                                                           <  2:2872721‑M2/91‑2 (MQ=255)

  aaTGTACATCACTCGCTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACATATAATCACgt                                                                                          >  2:25627‑M2/1‑89 (MQ=255)

   aTGTACATCACTCGCTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACATATAATCACgta                                                                                         <  2:810105‑M2/91‑4 (MQ=255)

   aTGTACATCACTCGCTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACATATAATCACgta                                                                                         <  1:1745796‑M2/91‑4 (MQ=255)

        cATCACTCGCTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATCGAATCTTCAAAAAAACACCTCCTACATATAATCACgtaggagg                                                                                    >  1:4399256‑M2/1‑83 (MQ=255)

        cATCACTCGCTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACATATAATCACgtaggagg                                                                                    <  1:3027125‑M2/91‑9 (MQ=255)

        cATCACTCGCTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACATATAATCACgtaggagg                                                                                    >  1:354604‑M2/1‑83 (MQ=255)

        cATCACTCGCTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACATATAATCACgtaggagg                                                                                    >  1:4125902‑M2/1‑83 (MQ=255)

         aTCACTCGCTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACATATAATCACgtaggaggt                                                                                   >  1:4539125‑M2/1‑82 (MQ=255)

           cACTCGCTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACATATAATCACgtaggaggtgt                                                                                 >  2:4583960‑M2/1‑80 (MQ=255)

             cTCGCTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACATATAATCACgtaggaggtgttt                                                                               >  1:3297456‑M2/1‑78 (MQ=255)

             cTCGCTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACATATAATCACgtaggaggtgttt                                                                               >  1:887213‑M2/1‑78 (MQ=255)

                gCTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACATATAATCACgtaggaggtgtttttt                                                                            <  2:1468505‑M2/91‑17 (MQ=255)

                 cTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACATATAATCACGTAGGAGGTGTTTttat                                                                           <  1:2864420/91‑1 (MQ=255)

                 cTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACATATAATCACGTAGGAGGTGTTTttat                                                                           <  1:3618733/91‑1 (MQ=255)

                  tttCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACATATAATCACGTAGGAGGTGTTTttatt                                                                          >  2:2136349/1‑91 (MQ=255)

                   ttCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACATATAATCACGTAGGAGGTGTTTttatta                                                                         <  2:1269782/91‑1 (MQ=255)

                    tCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAACCACCTCCTACATATAATCACGTAGGAGGTGTTTTTATTAc                                                                        <  1:4689862/91‑1 (MQ=255)

                    tCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACATATAATCACGTAGGAGGTGTTTTTATTAc                                                                        >  1:646609/1‑91 (MQ=255)

                     cATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACATATAATCACGTAGGAGGTGTTTTTATTACt                                                                       <  1:1192710/91‑1 (MQ=255)

                      aTTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACATATAATCACGTAGGAGGTGTTTTTATTACtt                                                                      >  2:2437133/1‑91 (MQ=255)

                      aTTTCTATCGCTTTATTAATTACTTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACATATAATCACGTAGGAGGTGTTTTTATTACtt                                                                      >  2:2249703/1‑91 (MQ=255)

                       tttCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACATATAATCACGTAGGAGGTGTTTTTATTACTTc                                                                     >  1:4999785/1‑91 (MQ=255)

                        ttCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACATATAATCACGTAGGAGGTGTTTTTATTACTTCa                                                                    <  2:1086361/91‑1 (MQ=255)

                          cTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACATATAATCACGTAGGAGGTGTTTTTATTACTTCAAt                                                                  >  1:4874709/1‑91 (MQ=255)

                           tATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACATATAATCACgtaggaggtgtttttttgaagattcta                                                                 <  1:219632‑M2/91‑28 (MQ=255)

                               gCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACATATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAAc                                                             >  1:3368642/1‑91 (MQ=255)

                                 tttATTAATTATTTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACATATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCg                                                           <  2:2039138/91‑1 (MQ=255)

                                 tttATTAATTATTTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACATATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCg                                                           <  1:923322/91‑1 (MQ=255)

                                 tttATTAATTATTTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACATATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCg                                                           >  1:3968030/1‑91 (MQ=255)

                                    attaattaTTTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACATATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCgtgt                                                        <  1:123805/91‑1 (MQ=255)

                                      taattaTTTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACATATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTaa                                                      >  2:5011685/1‑91 (MQ=255)

                                       aattaTTTCTTGAAATAGAATCTTCAGAAAAACACCTCCTACATATAATCGCGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTaaa                                                     <  2:735458/91‑1 (MQ=255)

                                         ttattTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACATATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTaaaaa                                                   <  1:3536128/91‑1 (MQ=255)

                                         ttattTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACATATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTaaaaa                                                   >  2:1137157/1‑91 (MQ=255)

                                         ttattTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACATATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTaaaaa                                                   >  1:3097810/1‑91 (MQ=255)

                                         ttattTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACATATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTaaaaa                                                   <  1:5267897/91‑1 (MQ=255)

                                         ttattTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACATATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTaaaaa                                                   >  2:2474778/1‑91 (MQ=255)

                                         ttattTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACATATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTaaaaa                                                   >  2:306463/1‑91 (MQ=255)

                                          tattTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACATATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTAAAAAt                                                  >  2:3899387/1‑91 (MQ=255)

                                           attTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACATATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTAAAAATg                                                 <  1:3247163/91‑1 (MQ=255)

                                           attTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACATATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTAAAAATg                                                 <  2:693777/91‑1 (MQ=255)

                                           attTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACATATAAGGACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTAAAAATg                                                 >  2:5476836/1‑91 (MQ=255)

                                            tttCTTGAAATAGAATCTTCAAAAAAACACCTCCTACATATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTAAAAATgg                                                <  1:2413662/91‑1 (MQ=255)

                                             ttCTTGAAATAGAATCTTCAAAAAAACACCTCCTACATATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTAAAAATGGa                                               <  1:1040636/91‑1 (MQ=255)

                                              tCTTGAAATAGAATCTTCAAAAAAACACCTCCTACATATAATCACGTAGGAGGTGTTTTTCTTACTTCAATTTAACCGTGTAAAAATGGAt                                              >  1:4353837/1‑91 (MQ=255)

                                              tCTTGAAATAGAATCTTCAAAAAAACACCTCCTACATATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTAAAAATGGAt                                              <  1:1418610/91‑1 (MQ=255)

                                              tCTTGAAATAGAATCTTCAAAAAAACACCTCCTACATATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTAAAAATGGAt                                              <  2:5188927/91‑1 (MQ=255)

                                               cTTGAAATAGAATCTTCAAAAAAACACCTCCTACATATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTAAAAATGGAtt                                             <  1:2493907/91‑1 (MQ=255)

                                               cTTGAAATAGAATCTTCAAAAAAACACCTCCTACATATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTAAAAATGGAtt                                             <  2:4042829/91‑1 (MQ=255)

                                               cTTGAAATAGAATCTTCAAAAAAACACCTCCTACATATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTAAAAATGGAtt                                             <  2:478000/91‑1 (MQ=255)

                                                ttGAAATAGAATCTTCAAAAAAACACCTCCTACATATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTAAAAATGGAttt                                            <  2:3106797/91‑1 (MQ=255)

                                                 tGAAATAGAATCTTCAAAAAAACACCTCCTACATATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTAAAAATGGATTTa                                           >  2:626486/1‑91 (MQ=255)

                                                 tGAAATAGAATCTTCAAAAAAACACCTCCTACATATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTAAAAATGGATTTa                                           <  1:2915095/91‑1 (MQ=255)

                                                 tGAAATAGAATCTTCAAAAAAACACCTCCTACATATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTAAAAATGGATTTa                                           >  1:2990800/1‑91 (MQ=255)

                                                 tGAAATAGAATCTTCAAAAAAACACCTCCTACATATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTAAAAATGGATTTa                                           >  1:2335285/1‑91 (MQ=255)

                                                 tGAAATAGAATCTTCAAAAAAACACCTCCTACATATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTAAAAATGGATTTa                                           >  1:5145781/1‑91 (MQ=255)

                                                  gAAATAGAATCTTCAAAAAAACACCTCCTAGATATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTAAAAATGGATTTaa                                          <  2:5599953/91‑1 (MQ=255)

                                                  gAAATAGAATCTTCAAAAAAACACCTCCTACATATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTAAAAATGGATTTaa                                          >  2:514303/1‑91 (MQ=255)

                                                    aaTAGAATCTTCAAAAAAACACCTCCTACATATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTAAAAATGGATTTAAtt                                        >  2:184905/1‑91 (MQ=255)

                                                     aTAGAATCTTCAAAAAAACACCTCCTACATATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTAAAAATGGATTTAATTg                                       <  1:3938416/91‑1 (MQ=255)

                                                     aTAGAATCTTCAAAAAAACACCTCCTACATATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTAAAAATGGATTTAATTg                                       <  1:507729/91‑1 (MQ=255)

                                                     aTAGAATCTTCAAAAAAACACCTCCTACATATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTAAAAATGGATTTAATTg                                       <  1:3337578/91‑1 (MQ=255)

                                                      tAGAATCTTCAAAAAAACACCTCCTACATATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTAAAAATGGATTTAATTGt                                      >  2:4391623/1‑91 (MQ=255)

                                                       aGAATCTTCAAAAAAACACCTCCTACATATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTAAAAATGGATTTAATTGtt                                     >  2:4103312/1‑91 (MQ=255)

                                                         aaTCTTCAAAAAAACACCTCCTACATATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTAAAAATGGATTTAATTGTtca                                   <  1:456260/91‑1 (MQ=255)

                                                         aaTCTTCAAAAAAACACCTCCTACATATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTAAAAATGGATTTAATTGTtca                                   >  1:1979706/1‑91 (MQ=255)

                                                           tCTTCAAAAAAACACCTCCTACATATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTAAAAATGGATTTAATTGTtcatc                                 <  1:3821662/91‑1 (MQ=255)

                                                           tCTTCAAAAAAACACCTCCTACATATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTAAAAATGGATTTAATTGTtcatc                                 <  2:2993122/91‑1 (MQ=255)

                                                           tCTTCAAAAAAACACCTCCTACATATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTAAAAATGGATTTAATTGTtcatc                                 <  1:2521265/91‑1 (MQ=255)

                                                            cTTCAAAAAAACACCTCCTACATATAATCACATAGGAGGTGTTTTTATTACTTCAAAAAAAAAAAAAAAAAATGGATTTAATTGTtcatca                                <  2:2662548/91‑1 (MQ=255)

                                                             ttCAAAAAAACACCTCCTACATATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTAAAAATGGATTTAATTGTtcatcat                               <  1:2602910/91‑1 (MQ=255)

                                                                     aaCACCTCCTACATATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTAAAAATGGATTTAATTGTTCATCATCAACcgtc                       <  1:4320860/91‑1 (MQ=255)

                                                                      acacCTCCTACATATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTAAAAATGGATTTAATTGTTCATCATCAACcgtcg                      <  1:5555733/91‑1 (MQ=255)

                                                                       cacCTCCTACATATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTAAAAATGGATTTAATTGTTCATCATCAACcgtcgt                     >  2:2084265/1‑91 (MQ=255)

                                                                       cacCTCCTACATATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTAAAAATGGATTTAATTGTTCATCATCAACcgtcgt                     >  1:2047036/1‑91 (MQ=255)

                                                                       cacCTCCTACATATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTAAAAATGGATTTAATTGTTCATCATCAACcgtcgt                     <  1:2810295/91‑1 (MQ=255)

                                                                        acCTCCTACATATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTAAAAATGGATTTAATTGTTCATCATCAACCGTCGta                    >  1:182297/1‑91 (MQ=255)

                                                                        acCTCCTACATATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTAAAAATGGATTTAATTGTTCATCATCAACCGTCGta                    >  1:5405579/1‑91 (MQ=255)

                                                                         cctcctACATATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTAAAAATGGATTTAATTGTTCATCATCAACCGTCGtat                   >  1:2691023/1‑91 (MQ=255)

                                                                         cctcctACATATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTAAAAATGGATTTAATTGTTCATCATCAACCGTCGtat                   <  2:2189347/91‑1 (MQ=255)

                                                                         cctcctACATATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTAAAAATGGATTTAATTGTTCATCATCAACCGTCGtat                   <  2:3992916/91‑1 (MQ=255)

                                                                         cctcctACATATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTAAAAATGGATTTAATTGTTCATCATCAACCGTCGtat                   >  1:3449184/1‑91 (MQ=255)

                                                                         cctcctACATATAATCACGTAGGAGGTGCTTTCATTACTTCAATTTAACCGTGTCAAAATGGATTTAATTGTTCATCATCACCCGTCGtac                   >  2:3734912/1‑90 (MQ=255)

                                                                          ctcctACATATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTAAAAATGGATTTAATTGTTCATCATCAACCGTCGtata                  >  2:3226008/1‑91 (MQ=255)

                                                                            cctACATATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTAAAAATGGATTTAATTGTTCATCATCAACCGTCGTATATg                >  1:2298004/1‑91 (MQ=255)

                                                                             ctACATATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTAAAAATGGATTTAATTGTTCATCATCAACCGTCGTATATgg               <  2:1556998/91‑1 (MQ=255)

                                                                               aCATATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTAAAAATGGATTTAATTGTTCATCATCAACCGTCGTATATGGAc             <  2:5431752/91‑1 (MQ=255)

                                                                                cATATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTAAAAATGGATTTAATTGTTCATCATCAACCGTCGTATATGGAcc            <  1:1616422/91‑1 (MQ=255)

                                                                                cATATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTAAAAATGGATTTAATTGTTCATCATCAACCGTCGTATATGGAcc            <  1:850154/91‑1 (MQ=255)

                                                                                  tataATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTAAAAATGGATTTAATTGTTCATCATCAACCGTCGTATATGGACCAt          <  2:4983392/91‑1 (MQ=255)

                                                                                  tataATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTAAAAATGGATTTAATTGTTCATCATCAACCGTCGTATATGGACCAt          >  1:4966649/1‑91 (MQ=255)

                                                                                    taATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTAAAAATGGATTTAATTGTTCATCATCAACCGTCGTATATGGACCATGt        <  1:1212240/91‑1 (MQ=255)

                                                                                    taATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTAAAAATGGATTTAATTGTTCATCATCAACCGTCGTATATGGACCATGt        >  2:1763976/1‑91 (MQ=255)

                                                                                      aTCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTAAAAATGGATTTAATTGTTCATCATCAACCGTCGTATATGGACCATGTcc      <  1:1318665/91‑1 (MQ=255)

                                                                                        cACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTAAAAATGGATTTAATTGTTCATCATCAACCGTCGTATATGGACCATGTCCAg    <  1:783696/91‑1 (MQ=255)

                                                                                        cACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTAAAAATGGATTTAATTGTTCATCATCAACCGTCGTATATGGACCATGTCCAg    <  2:533691/91‑1 (MQ=255)

                                                                                        cACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTAAAAATGGATTTAATTGTTCATCATCAACCGTCGTATATGGACCATGTCCAg    <  1:5019762/91‑1 (MQ=255)

                                                                                         aCGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTAAAAATGGATTTAATTGTTCATCATCAACCGTCGTATATGGACCATGTCCAgg   >  1:215494/1‑91 (MQ=255)

                                                                                         aCGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTAAAAATGGATTTAATTGTTCATCATCAACCGTCGTATATGGACCATGTCCAgg   <  2:194715/91‑1 (MQ=255)

AAAATGTACATCACTCGCTTTCATTTCTATCGCTTTATTAATTATTTCTTGAAATAGAATCTTCAAAAAAACACCTCCTACATATAATCACGTAGGAGGTGTTTTTATTACTTCAATTTAACCGTGTAAAAATGGATTTAATTGTTCATCATCAACCGTCGTATATGGACCATGTCCAGGG  >  USA300TCH1516_ALE/1657612‑1657792

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.