| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2561201 = | 247 (0.860) | 13 (0.050) | 11/132 | NT | 6.7% | intergenic (+30/+33) | USA300HOU_RS13195/cpdA | hypothetical protein/3',5'‑cyclic adenosine monophosphate phosphodiesterase CpdA |
| ? | USA300TCH1516_ALE | 2561237 = | 159 (0.670) | coding (804/807 nt) | cpdA | 3',5'‑cyclic adenosine monophosphate phosphodiesterase CpdA | |||||
Only 100 of 318 total aligned reads displayed.
CATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGC > USA300TCH1516_ALE/2561111‑2561291 | cATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACAt < 2:3076265/91‑1 (MQ=255) tttATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATaa > 2:789077/1‑91 (MQ=255) tttATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATaa > 1:4881814/1‑91 (MQ=255) tttATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATaa > 1:3465967/1‑91 (MQ=255) ctgtccgtgtctaggctatccaagacaatggcgttcagaagatatttaccaggaaataaatgagacgatacaaataatagaaattTAAAAt < 1:2939435‑M1/6‑1 (MQ=255) aTGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAAt < 2:2072324/91‑1 (MQ=255) gtgCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATgc > 2:3548453/1‑91 (MQ=255) gtgCAACCACATTCATATACAATTGAAAAGCAGCAACAAAATAAACACACGTAAGTAAGCACATTGCTCGCGTGTGTAAAACATAAAATgc < 2:4834393/91‑1 (MQ=255) gtccgtgtctaggctatccaagacaatggcgttcagaagatatttaccaggaaataaatgagacgatacaaataatagaaattTAAAATgc < 2:217481‑M1/8‑1 (MQ=255) tgCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATgcg > 2:1312808/1‑91 (MQ=255) tgCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATgcg < 2:2981873/91‑1 (MQ=255) tccgtgtctaggctatccaagacaatggcgttcagaagatatttaccaggaaataaatgagacgatacaaataatagaaattTAAAATgcg > 1:868262‑M1/83‑91 (MQ=255) tccgtgtctaggctatccaagacaatggcgttcagaagatatttaccaggaaataaatgagacgatacaaataatagaaattTAAAATgcg > 1:2548909‑M1/83‑91 (MQ=255) tccgtgtctaggctatccaagacaatggcgttcagaagatatttaccaggaaataaatgagacgatacaaataatagaaattTAAAATgcg > 2:4744362‑M1/83‑91 (MQ=255) gCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATgcgc < 1:921477/91‑1 (MQ=255) gCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATgcgc > 1:3959087/1‑91 (MQ=255) ccgtgtctaggctatccacgacaatggcgttcagaagatatttaccaggaaataaatgagacgatacaaataatagaaattTAAAATgcgc < 1:5526748‑M1/10‑1 (MQ=255) cgtgtctaggctatccaagacaatggcgttcagaagatatttaccaggaaataaatgagacgatacaaataatagaaattTAAAATGCGCa < 1:2688609‑M1/11‑1 (MQ=255) cAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCa > 2:453045/1‑91 (MQ=255) aCCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTCCTCGCGTGTGTAAAACATAAAATGCGCaaa > 2:4102953/1‑91 (MQ=255) ccACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAAc < 1:4457832/91‑1 (MQ=255) cacaTTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACt > 1:4802837/1‑91 (MQ=255) caTTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTgg < 1:990057/91‑1 (MQ=255) aTTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTggg > 2:2800345/1‑91 (MQ=255) ttCATATACCGTCGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACGTTGCTCGCGTGTGTAAAACATCTAATGCGAAAACTGGGt < 2:3661915/91‑1 (MQ=255) ggctatccaagacaatggcgttcagaagatatttaccaggaaataaatgagacgatacaaataatagaaattTAAAATGCGCAAACTGGGt > 2:2351223‑M1/73‑91 (MQ=255) tCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTc > 2:1595312/1‑91 (MQ=255) tCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTc > 2:5096779/1‑91 (MQ=255) tCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTc < 1:1424007/91‑1 (MQ=255) tCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTc > 1:5115832/1‑91 (MQ=255) ctatccaagacaatggcgttcagaagatatttaccaggaaataaatgagacgatacaaataatagaaattTAAAATGCGCAAACTGGGTCa > 2:742263‑M1/71‑91 (MQ=255) cATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTcc > 2:2939435/1‑90 (MQ=255) cATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCa < 2:1898264/91‑1 (MQ=255) tccaagacaatggcgttcagaagatatttaccaggaaataaatgagacgatacaaataatagaaattTAAAATGCGCAAACTGGGTCAGGt > 1:4239520‑M1/68‑91 (MQ=255) taCAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGtt < 1:3800270/91‑1 (MQ=255) ccaagacaatggcgttcagaagatatttaccaggaaataaatgagacgatacaaataatagaaattTAAAATGCGCAAACTGGGTCAGGtt > 1:5566542‑M1/67‑91 (MQ=255) cAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTg > 2:5567698/1‑91 (MQ=255) cAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTg < 1:5372617/91‑1 (MQ=255) ttGAAAATCAGCACCAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATATAATGCGCAAACTGGGTCAGGTTTgcgc < 1:2440453/91‑1 (MQ=255) tGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCa > 2:4943737/1‑91 (MQ=255) gAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCAt < 1:238345/91‑1 (MQ=255) atggcgttcagaagatatttaccaggaaataaatgagacgatacaaataatagaaattTAAAATGCGCAAACTGGGTCAGGTTTGCGCAtt > 1:1522480‑M1/59‑91 (MQ=255) aaaaTCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCAtt > 2:573154/1‑91 (MQ=255) aaaTCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCAttt < 1:5004673/91‑1 (MQ=255) aaaTCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCAttt < 2:1484190/91‑1 (MQ=255) aaTCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCAtttt > 2:3560695/1‑91 (MQ=255) aaTCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCAtttt > 2:3853041/1‑91 (MQ=255) aTCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTa < 1:3281175/91‑1 (MQ=255) cAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTaaa > 2:344802/1‑91 (MQ=255) cAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTaaa > 2:5289315/1‑91 (MQ=255) gCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAAtt < 1:5604500/91‑1 (MQ=255) gCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAAtt > 1:4089906/1‑91 (MQ=255) gCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAAtt < 1:5327672/91‑1 (MQ=255) gCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAAtt < 1:2075490/91‑1 (MQ=255) aaacaaAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAAttt < 2:2864296/90‑1 (MQ=255) aacaaAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTc > 1:1224611/1‑91 (MQ=255) aacaaAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTc > 2:2450468/1‑91 (MQ=255) aacaaAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTc > 1:1615409/1‑91 (MQ=255) aacaaAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTc > 1:3080751/1‑91 (MQ=255) aacaaAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTc < 1:4653975/91‑1 (MQ=255) aaaaTAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCtat < 1:1248660/91‑1 (MQ=255) aaaTAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCtatt < 2:1039537/91‑1 (MQ=255) aTAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCtattat < 2:4393110/91‑1 (MQ=255) acacacGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGt > 2:545820/1‑91 (MQ=255) acacacGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGt > 1:3643549/1‑91 (MQ=255) acacacGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGt < 2:4212380/91‑1 (MQ=255) cacGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATc > 1:2461725/1‑91 (MQ=255) gtaagtaaACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGtc < 1:4718112/91‑1 (MQ=255) taagtaaACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGtct < 1:1093116/91‑1 (MQ=255) aagtaaACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGtctc > 2:1398308/1‑91 (MQ=255) gtaaACACATTACTCGCTTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCat < 2:2297061/91‑1 (MQ=255) gtaaACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCat < 2:4016688/91‑1 (MQ=255) acacATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCatttat > 2:4688784/1‑91 (MQ=255) cacaTTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCatttatt < 2:4641179/91‑1 (MQ=255) cacaTTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCatttatt > 1:3148927/1‑91 (MQ=255) caTTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTc > 1:1983392/1‑91 (MQ=255) caTTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTc > 2:1136546/1‑91 (MQ=255) caTTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTc < 1:2613966/91‑1 (MQ=255) caTTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTc > 2:172598/1‑91 (MQ=255) aTTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTcc > 2:2564472/1‑91 (MQ=255) ttACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCt < 2:2623421/91‑1 (MQ=255) aCTCGCGTGTGTAAGACATAAAATCCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTgg > 2:3938308/1‑91 (MQ=255) aCTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTgg > 1:305256/1‑91 (MQ=255) cTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGt > 2:5079641/1‑91 (MQ=255) cgcgTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTaa < 2:177296/91‑1 (MQ=255) gtgtgtAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAata > 1:385365/1‑91 (MQ=255) gtAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATAtctt > 2:3392143/1‑91 (MQ=255) gtAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATAtctt > 1:636285/1‑91 (MQ=255) gtAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTATATTATTTGTATCGTCTCATTTATTTCCTGGTAAATAtctt < 2:5211946/91‑1 (MQ=255) tAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATAtcttc > 2:2748763/1‑91 (MQ=255) tAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATAtcttc > 2:3303095/1‑91 (MQ=255) tAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATAtcttc > 1:2108046/1‑91 (MQ=255) tAAAACATAAAATGCGCAAACTGGGCCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATAtcttc > 1:2046009/1‑91 (MQ=255) aaaCATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTg > 1:4603589/1‑91 (MQ=255) aTAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACg < 1:2203064/91‑1 (MQ=255) aTAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACg < 2:1944947/91‑1 (MQ=255) TAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGc > 2:4054022‑M1/1‑91 (MQ=255) TAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGc > 2:28853‑M1/1‑91 (MQ=255) TAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGc > 1:1820353‑M1/1‑91 (MQ=255) TAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTAGCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGc > 1:4320425‑M1/1‑91 (MQ=255) | CATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGC > USA300TCH1516_ALE/2561111‑2561291 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |