| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2561201 = | 247 (0.860) | 13 (0.050) | 11/132 | NT | 6.7% | intergenic (+30/+33) | USA300HOU_RS13195/cpdA | hypothetical protein/3',5'‑cyclic adenosine monophosphate phosphodiesterase CpdA |
| ? | USA300TCH1516_ALE | 2561237 = | 159 (0.670) | coding (804/807 nt) | cpdA | 3',5'‑cyclic adenosine monophosphate phosphodiesterase CpdA | |||||
Only 100 of 314 total aligned reads displayed.
TCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATAA > USA300TCH1516_ALE/2561147‑2561327 | cAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTaaa > 2:4033738/1‑91 (MQ=255) aGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAAt > 2:5212571/1‑91 (MQ=255) aGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAAt > 1:3027603/1‑91 (MQ=255) gCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAAtt < 1:5604500/91‑1 (MQ=255) gCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAAtt < 1:5327672/91‑1 (MQ=255) gCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAAtt > 1:4089906/1‑91 (MQ=255) aacaaAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTc > 1:1225107/1‑91 (MQ=255) aacaaAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTc > 1:3080751/1‑91 (MQ=255) aacaaAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTc > 2:497109/1‑91 (MQ=255) caaAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCta > 2:4237887/1‑91 (MQ=255) aaaaTAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCtat < 2:1783855/91‑1 (MQ=255) aaaTAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCtatt < 2:4011334/91‑1 (MQ=255) aTAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCtattat > 1:4024448/1‑91 (MQ=255) aaaaCACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAATATGCGCAATCTGGGTCAGGTTTGCGCATTTTAAATTTTTattatt < 2:5354775/90‑1 (MQ=255) aaaCACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTAttt < 1:4386853/91‑1 (MQ=255) ttaccaggaaataaatgagacgatacaaataatagaaatataaaatgcgcaaactgggtcaggtttgcgcattttaAATTTCTATTATTTg < 1:2589696‑M2/15‑1 (MQ=255) acacacGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGt > 1:461896/1‑91 (MQ=255) acacGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTAt > 2:2688609/1‑91 (MQ=255) cacGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATc > 1:2460338/1‑91 (MQ=255) cacGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATc > 1:1984659/1‑91 (MQ=255) acGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCg > 1:1131112/1‑91 (MQ=255) cGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGt > 2:1749139/1‑91 (MQ=255) cGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGt < 2:442224/91‑1 (MQ=255) cGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGt > 1:2886716/1‑91 (MQ=255) gtaagtaaACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGtc < 1:3771662/91‑1 (MQ=255) gtaagtaaACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGtc > 2:3520475/1‑91 (MQ=255) gtaaataaACACATTACGCGCGTGTGTAAAGCATAAAATGCGCAAATTGTGTCAGGGTTGCGCATTTTAAATTTCTATTATTTGTATCGtc < 2:4891939/91‑1 (MQ=255) taagtaaACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGtct > 2:3697992/1‑91 (MQ=255) aaataaatgagacgatacaaataatagaaatttaaaatgcgcaaacctgacccagtttgcgcattttaAATTTCTATTATTTGTATCGtct > 2:2894283‑M2/69‑91 (MQ=255) agtaaACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCa < 2:3444657/91‑1 (MQ=255) taaACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGCTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCatt < 2:5472977/91‑1 (MQ=255) aaCACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCattta < 1:5407696/91‑1 (MQ=255) gagacgatacaaataatagaaatttaaaatgcgcaaactgggtcaggtttgcgcattttaAATTTCTATTATTTGTATCGTCTCatttatt < 1:4528260‑M2/31‑1 (MQ=255) cacaTTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCatttatt > 1:3148927/1‑91 (MQ=255) cacaTTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCatttatt < 2:5551207/91‑1 (MQ=255) caTTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTc > 2:1136546/1‑91 (MQ=255) caTTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTc < 1:1708099/91‑1 (MQ=255) cTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGt < 2:1927375/91‑1 (MQ=255) cTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGt > 2:5079641/1‑91 (MQ=255) tCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTa < 1:3322637/91‑1 (MQ=255) tCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTa < 2:1263371/91‑1 (MQ=255) tCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTa < 1:2397410/91‑1 (MQ=255) tCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTa < 2:2843316/91‑1 (MQ=255) cgcgTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTaa < 1:700010/91‑1 (MQ=255) gtgtgtAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAata < 2:2254767/91‑1 (MQ=255) gtAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATAtctt > 2:3392142/1‑91 (MQ=255) gtAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATAtctt > 1:636285/1‑91 (MQ=255) tAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATAtcttc > 1:2108046/1‑91 (MQ=255) aaaaCATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATAtcttct < 2:4655876/91‑1 (MQ=255) aTAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACg < 1:2203064/91‑1 (MQ=255) AAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGcc > 1:858197‑M1/1‑91 (MQ=255) AAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGcc > 1:470226‑M1/1‑91 (MQ=255) aaatgcgtaaacctgacccagtttgcgcattttaAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCa > 1:987876‑M2/35‑91 (MQ=255) AAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACgccc < 2:3634137‑M1/91‑2 (MQ=255) AAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCa > 1:3853041‑M1/1‑91 (MQ=255) AAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCa < 2:1597867‑M1/91‑1 (MQ=255) aatgcgcaaacctgacccagtttgcgcattttaAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCAt > 1:1522480‑M2/34‑91 (MQ=255) AATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCAt < 2:876648‑M1/91‑1 (MQ=255) AATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCAt > 2:11312‑M1/1‑91 (MQ=255) AATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCAt < 2:105063‑M1/91‑1 (MQ=255) AATGCGCAAACTGGGTCAGGTTTGCGCATTATAAATTTCTATTATTTGTATCGTCTCATTTCTTTCCTGTTAAATATCTTCTGAACGCCAt < 2:1951196‑M1/91‑1 (MQ=255) TGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTg > 1:1612309‑M1/1‑91 (MQ=255) GCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGt < 2:5090192‑M1/91‑1 (MQ=255) CGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTc < 1:2546026‑M1/91‑1 (MQ=255) CGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTc > 1:3904912‑M1/1‑91 (MQ=255) GCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCt > 1:1030695‑M1/1‑91 (MQ=255) GCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCt > 2:4376887‑M1/1‑91 (MQ=255) CAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCtt < 1:916198‑M1/91‑1 (MQ=255) CAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCtt < 1:5067852‑M1/91‑1 (MQ=255) AAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTg > 1:1871020‑M1/1‑91 (MQ=255) AAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTg > 2:3079765‑M1/1‑91 (MQ=255) AAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTg > 1:1270117‑M1/1‑91 (MQ=255) aacctgacccagtttgcgcattttaAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTgg > 1:5566542‑M2/26‑91 (MQ=255) AACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTgg < 2:3178808‑M1/91‑1 (MQ=255) AACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTgg > 2:5437780‑M1/1‑91 (MQ=255) AACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTgg < 2:2997702‑M1/91‑1 (MQ=255) AACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTgg > 2:4842836‑M1/1‑91 (MQ=255) acctgacccagtttgcgcattttaAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGa > 1:4239520‑M2/25‑91 (MQ=255) ctgacccagtttgcgcattttaAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATa > 2:4092743‑M2/23‑91 (MQ=255) gtgTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAg < 1:2083498/89‑1 (MQ=255) gggTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAg < 1:1318389/91‑1 (MQ=255) gggTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAg < 2:417741/91‑1 (MQ=255) gggTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAg < 2:2107268/91‑1 (MQ=255) ggTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGc > 2:2404724/1‑91 (MQ=255) ggTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGc > 1:2652518/1‑91 (MQ=255) acccagtttgcgcattttaAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGcc > 2:2351223‑M2/20‑91 (MQ=255) tCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCt < 2:330580/91‑1 (MQ=255) tttgcgcattttaAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGaca < 2:2871615‑M2/78‑1 (MQ=255) tgcgcattttaAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACg < 1:2061391‑M2/80‑1 (MQ=255) cgcattttaAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGa > 2:4744362‑M2/10‑91 (MQ=255) cgcattttaAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGa < 2:2556413‑M2/82‑1 (MQ=255) cattttaAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACa > 2:1462586‑M2/8‑91 (MQ=255) cattttaAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACa < 2:743289‑M2/84‑1 (MQ=255) cattttaAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACa < 1:3515109‑M2/84‑1 (MQ=255) cattttaAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACa < 2:3856287‑M2/84‑1 (MQ=255) ttttaAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACaga > 1:429942‑M2/6‑91 (MQ=255) tttaAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACagag < 1:4948277‑M2/87‑1 (MQ=255) taAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGATAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGAt < 1:4669621‑M2/89‑1 (MQ=255) aaTTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATaa > 1:2711092/1‑91 (MQ=255) aaTTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATaa > 1:476648/1‑91 (MQ=255) | TCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATAA > USA300TCH1516_ALE/2561147‑2561327 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |