| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2740966 = | 384 (1.340) | 11 (0.050) | 10/132 | NT | 4.1% | intergenic (+8/+73) | yhdG_2/USA300HOU_RS14115 | putative amino acid permease YhdG/Isoleucine 2‑epimerase |
| ? | USA300TCH1516_ALE | 2741016 = | 201 (0.850) | intergenic (+58/+23) | yhdG_2/USA300HOU_RS14115 | putative amino acid permease YhdG/Isoleucine 2‑epimerase | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 483 total aligned reads displayed.
TTGTTGGTATCATCCTATATTTAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAA‑‑TCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGA > USA300TCH1516_ALE/2740876‑2741056 | ttgttgGTATCAAAATATATTTAAGTTATAGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATAAAAAAAAAAAaaaaaaaaaat‑aaa < 2:3312030/91‑1 (MQ=255)ttgttaGTATCATCCTATATTTAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCAACCAaaataaaaaat‑aaa < 2:3114776/91‑1 (MQ=255) tgttgGTATCATCCTATATTTAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAaataaaaaat‑aaaa > 2:2472024/1‑91 (MQ=255) tgttgGTATCATCCTATATTTAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAaataaaaaat‑aaaa < 1:2810125/91‑1 (MQ=255) agatgcactgactgctttggaagtaggtaacttagatcaatatgacatatctggacaaggttggtaatagcgattatcttaatataaaata > 1:4996763‑M1/91‑91 (MQ=255) gttgGTATCATCCTATATTTAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAataaaaaat‑aaaaa < 1:2516767/91‑1 (MQ=255) ttgGTATCATCCTATATTTAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAAtaaaaaat‑aaaaaa < 1:84205/91‑1 (MQ=255) tgGTATCATCCTATATTTAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAGAT‑aaaaaaa > 2:5350483/1‑91 (MQ=255) ggTATCATCCTATATTTAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑aaaaaaaa > 2:2834469/1‑91 (MQ=255) ggTATCATCCTATATTTAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑aaaaaaaa > 1:3410754/1‑91 (MQ=255) ggTATCATCCTATATTTAAGTTATGGACGTAGACATTCTAAGAAAAAAGACGTAGCTGAATACCACCCACCAAAATAaaaaaa‑aaaaaaaa < 2:1308449/91‑1 (MQ=255) gcactgactgctttggaagcaggtaacttagatcaatatgacatatctggacaaggttggtaatagcgattatcttaatataaaataaaaa > 2:2079565‑M1/87‑91 (MQ=255) gcactgactgctttggaagcaggtaacttagatcaatatgacatatctggacaaggttggtaatagcgattatcttaatataaaataaaaa > 1:1284499‑M1/87‑91 (MQ=255) cactgactgctttggaagcaggtaacttagatcaatatgacatatctggacaaggttggtaatagcgattatcttaatataaaataaaaaa < 1:2129184‑M1/6‑1 (MQ=255) cactgactgctttggaagcaggtaacttagatcaatatgacatatctggacaaggttggtaatagcgattatcttaatataaaataaaaaa > 1:1914314‑M1/86‑91 (MQ=255) tATCATCCTATATTTAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAA‑‑Tc > 2:1549940/1‑91 (MQ=255) tATCATCCTATATTTAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAA‑‑Tc < 1:624551/91‑1 (MQ=255) tATCATCCTATATTTAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAA‑‑Tc > 1:4096163/1‑91 (MQ=255) ctgactgctttggaagcaggtaacttagatcaatatgacatatctggacaaggttggtaatagcgattatcttaatataaaatAAAAAA‑‑Tc < 1:4351919‑M1/8‑1 (MQ=255) atcatcCTATATTTAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAA‑‑TCa < 2:4328130/91‑1 (MQ=255) tgactgctttggaagcaggtaacttagatcaatatgacatatctggacaaggttggtaatagcgattatcttaatataaaatAAAAAA‑‑TCa < 1:1641632‑M1/9‑1 (MQ=255) catcCTATATTTAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAA‑‑TCAtt > 1:3046205/1‑91 (MQ=255) atcCTATATTTAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAA‑‑TCAttt < 1:4840329/91‑1 (MQ=255) actgctttggaagcaggtaacttaggtcaagatgacatatctggacaaggttggtaatagcgattatcttaatataaaatAAAAAA‑‑TCAtt > 1:39178‑M1/81‑91 (MQ=255) tcCTATATTTAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAA‑‑TCATTTc > 2:5155635/1‑91 (MQ=255) tcCTATATTTAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAA‑‑TCATTTc < 2:27519/91‑1 (MQ=255) ctgctttggaagcaggtaacttagatcaatatgacatatctggacaaggttggtaatagcgattatcttaatataaaatAAAAAA‑‑TCAttt < 1:2687453‑M1/12‑1 (MQ=255) tgctttggaagcaggtaacttagatcaatatgacatatctggacaaggttggtaatagcgattatcttaatataaaatAAAAAA‑‑TCATTTc > 1:1001228‑M1/79‑91 (MQ=255) ccTATATTTAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAA‑‑TCATTTcc < 1:4251395/91‑1 (MQ=255) cTATATTTAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAA‑‑TCATTTccc < 1:680/91‑1 (MQ=255) cTATATTTAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAA‑‑TCATTTccc > 2:5496125/1‑91 (MQ=255) tataTTTAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAA‑‑TCATTTCCCa > 2:5061796/1‑91 (MQ=255) atatTTAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAA‑‑TCATTTCCCAt > 2:474078/1‑91 (MQ=255) tatTTAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAA‑‑TCATTTCCCATc > 2:2572849/1‑91 (MQ=255) tatTTAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAA‑‑TCATTTCCCATc > 2:1780687/1‑91 (MQ=255) tAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAA‑‑TCATTTCCCATCTGAt > 1:1091826/1‑91 (MQ=255) aGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAA‑‑TCATTTCCCATCTGATTa > 2:5258273/1‑91 (MQ=255) aGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAA‑‑TCATTTCCCATCTGATTa > 2:1113666/1‑91 (MQ=255) gTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAA‑‑TCATTTCCCATCTGATTaa > 2:2965988/1‑91 (MQ=255) gTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAA‑‑TCATTTCCCATCTGATTaa > 1:4003974/1‑91 (MQ=255) gTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAA‑‑TCATTTCCCATCTGATTaa < 1:2223552/91‑1 (MQ=255) tATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAA‑‑TCATTTCCCATCTGATTAACa > 2:1208673/1‑91 (MQ=255) tATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAA‑‑TCATTTCCCATCTGATTAACa < 1:5061196/91‑1 (MQ=255) tATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAA‑‑TCATTTCCCATCTGATTAACa < 1:3341374/91‑1 (MQ=255) atagACTTAGACATACAAAGAAAAATGAAGTAGATGAACACCACCCACCAAAAAAAAAAAA‑AAAAAAAA‑‑TCATTTCCCATCTGATTAACAt < 2:242509/88‑1 (MQ=255) aTGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAA‑‑TCATTTCCCATCTGATTAACaa > 2:3399296/1‑90 (MQ=255) gACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAA‑‑TCATTTCCCATCTGATTAACATCCa > 1:2567092/1‑91 (MQ=255) cTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAA‑‑TCATTTCCCATCTGATTAACATCCAGa > 1:2940973/1‑91 (MQ=255) tAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAA‑‑TCATTTCCCATCTGATTAACATCCAGAtg > 2:3231569/1‑91 (MQ=255) tAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAA‑‑TCATTTCCCATCTGATTAACATCCAGAtg > 2:57385/1‑91 (MQ=255) aGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAA‑‑TCATTTCCCATCTGATTAACATCCAGAtgt > 2:3204364/1‑91 (MQ=255) aaCATACTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAA‑‑TCATTTCCCATCTGATTAACATCCAGAtgtg < 2:1877545/90‑1 (MQ=255) aCATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAA‑‑TCATTTCCCATCTGATTAACATCCAGATGTgg < 1:965322/91‑1 (MQ=255) aatatgacatatctggacaaggttgttaatagcgattatcttaatataaaatAAAAAA‑‑TCATTTCCCATCTGGTTAACATCCAGATGTGGa > 2:3852708‑M1/53‑91 (MQ=255) aTTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAA‑‑TCATTTCCCATCTGATTAACATCCAGATGTGGaa < 1:474078/91‑1 (MQ=255) ttCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAA‑‑TCATTTCCCATCTGATTAACATCCAGATGTGGaaa < 1:2439811/91‑1 (MQ=255) cTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAA‑‑TCATTTCCCATCTGATTAACATCCAGATGTGGAAATg > 2:2340972/1‑91 (MQ=255) tgacatatctggacaaggttggtaatagcgattatcttaatataaaatAAAAAA‑‑TCATTTCCCTTCTGATTAACATCCAGATGTGGAAATg > 2:3465378‑M1/49‑91 (MQ=255) tAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAA‑‑TCATTTCCCATCTGATTAACATCCAGATGTGGAAATGa < 1:3259406/91‑1 (MQ=255) tAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAA‑‑TCATTTCCCATCTGATTAACATCCAGATGTGGAAATGa > 2:3997092/1‑91 (MQ=255) gacatatctagaaaagattggtaatagcgattatcttaatataaaatAAAAAA‑‑TCATTTCCCATCTGATTAACATCCAGATGTGGAAATGa > 2:1174243‑M1/48‑91 (MQ=255) aaGAAAAATGACGTAGCTGGATACCACCCACCAAAATAAAAAAT‑AAAAAAAA‑‑TCATTTCCCATCTGATTAACATCCAGATGTGGAAATGAt > 1:4571031/1‑91 (MQ=255) aaGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAA‑‑TCATTTCCCATCTGATTAACATCCAGATGTGGAAATGAt > 1:2628225/1‑91 (MQ=255) gAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAA‑‑TCATTTCCCATCTGATTAACATCCAGATGTGGAAATGAttt > 2:830138/1‑91 (MQ=255) aaaTGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAA‑‑TCATTTCCCATCTGATTAACATCCAGATGTGGAAATGAtttttt > 2:2189902/1‑91 (MQ=255) aaaTGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAA‑‑TCATTTCCCATCTGATTAACATCCAGATGTGGAAATGAtttttt > 2:3863737/1‑91 (MQ=255) aaTGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAA‑‑TCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTtttta > 2:675967/1‑91 (MQ=255) ggacaaggttggtaatagcgattatcttaatataaaatAAAAAAAATCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTtttta > 2:4366051‑M1/39‑91 (MQ=255) gACATAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAGAAA‑‑TCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTttttattt < 2:5041743/91‑1 (MQ=255) aacaaagttggtaatagcgattatcttaatataaaatAAAAAAAATCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTttttat > 2:4953902‑M1/38‑91 (MQ=255) aCGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAA‑‑TCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTttttatttt < 1:535609/91‑1 (MQ=255) aCGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAA‑‑TCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTttttatttt < 1:3212017/91‑1 (MQ=255) aCGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAA‑‑TCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTttttatttt > 1:5447011/1‑91 (MQ=255) aCGTAGCTGAAGACCACCCACCAAAATAAAAAAT‑AAAAAAAA‑‑TCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTttttatttt > 2:1394106/1‑91 (MQ=255) cTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAA‑‑TCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTa < 1:1700171/91‑1 (MQ=255) gAATACCACCCACCAAAATAAAAAAT‑AAAAAAAA‑‑TCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAg < 1:1748950/91‑1 (MQ=255) aaTACCACCCACCAAAATAAAAAAT‑AAAAAAAA‑‑TCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTACTTTATATTAAGa > 2:3600372/1‑91 (MQ=255) ccacccacCAAAATAAAAAAT‑AAAAAAAA‑‑TCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAAt > 2:3689039/1‑91 (MQ=255) atagcgattatcttaatataaaatAAAAAA‑‑TCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATaa > 1:5098247‑M1/25‑91 (MQ=255) acccaccAAAATAAAAAAT‑AAAAAAAA‑‑TCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCg > 1:3124765/1‑91 (MQ=255) acccaccAAAATAAAAAAT‑AAAAAAAA‑‑TCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCg > 1:5130948/1‑91 (MQ=255) ccaccaAAATAAAAAAT‑AAAAAAAA‑‑TCATTTCCCATCTGATTAACATCCAGATGTGGAAATGGTTTTTTATTTTATATTAAGATAATCGCt < 1:144684/91‑1 (MQ=255) ccaccaAAATAAAAAAT‑AAAAAAAA‑‑TCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCt < 1:3781610/91‑1 (MQ=255) ccaAAATAAAAAATAAAAAAAAA‑‑TCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTAt > 1:1548121/1‑91 (MQ=255) ccaAAATAAAAAAT‑AAAAAAAA‑‑TCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTAtt < 2:4113367/91‑1 (MQ=255) acaAAATAAAAAAT‑AAAAAAAA‑‑TCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTAtt < 2:4512833/90‑1 (MQ=255) aaataaaaaat‑aaaAAAAA‑‑TCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTAcc > 2:732397/1‑91 (MQ=255) aaataaaaaat‑aaaAAAAA‑‑TCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTAcc < 2:2527087/91‑1 (MQ=255) aaataaaaaat‑aaaAAAAA‑‑TCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTAcc < 1:3512551/91‑1 (MQ=255) aataaaaaat‑aaaaAAAA‑‑TCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCa > 1:5234390/1‑91 (MQ=255) ataaaaaat‑aaaaaAAA‑‑TCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCaa < 1:3712596/91‑1 (MQ=255) taaaaaat‑aaaaaaAA‑‑TCATTTCCCATCTGATTAACATCCAGCTGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAAc < 1:5496125/91‑1 (MQ=255) aaaaaat‑aaaaaaAA‑‑TCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAAcc < 1:1149317/91‑1 (MQ=255) aaaaat‑aaaaaaAA‑‑TCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCt > 2:2258077/1‑91 (MQ=255) aaaaat‑aaaaaaAA‑‑TCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCt < 2:5406260/91‑1 (MQ=255) aaaaat‑aaaaaaAA‑‑TCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCt > 2:5605391/1‑91 (MQ=255) aat‑aaaaaaAA‑‑TCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTGt > 1:2017036/1‑91 (MQ=255) aat‑aaaaaaAA‑‑TCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTGt > 1:3574067/1‑91 (MQ=255) aaaaaaaa‑‑TCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCa < 1:4665515/91‑1 (MQ=255) aaaaaaa‑‑TCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAg < 2:4420019/91‑1 (MQ=255) | TTGTTGGTATCATCCTATATTTAAGTTATGGACTTAGACATTCTAAGAAAAATGACGTAGCTGAATACCACCCACCAAAATAAAAAAT‑AAAAAAAA‑‑TCATTTCCCATCTGATTAACATCCAGATGTGGAAATGATTTTTTATTTTATATTAAGATAATCGCTATTACCAACCTTGTCCAGA > USA300TCH1516_ALE/2740876‑2741056 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |