BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	161003 =	335 (1.170)	13 (0.060)	8/124	NT	5.7%	intergenic (+17/+114)	deoB/phnE_1	Phosphopentomutase/Phosphate‑import permease protein PhnE
*	?	USA300TCH1516_ALE	161059 =	174 (0.780)	13 (0.060)	8/124	NT	5.7%	intergenic (+73/+58)	deoB/phnE_1	Phosphopentomutase/Phosphate‑import permease protein PhnE

Only 100 of 384 total aligned reads displayed.

TTAAAGGAATTGAAATAGAATAAATTTAGATATTATAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAACAATACGTTTTCGGATTGAACCGGAAAT  >  USA300TCH1516_ALE/160969‑161149

ttAAAGGAATTGAAATAGAATAAATTTAGATATTATAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTttatt                                                                                            >  1:4611694/1‑91 (MQ=255)

 tAAAGGAATTGAAATAGAATAAATTTAGATATTATAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTttatta                                                                                           >  1:5155058/1‑91 (MQ=255)

    aGGAATTGAAATAGAATAAATTTAGATATTATAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTataa                                                                                        <  1:3293588/91‑1 (MQ=255)

    aGGAATTGAAATAGAATAAATTTAGATATTATAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTataa                                                                                        >  2:2946085/1‑91 (MQ=255)

      gAATTGAAATAGAATAAATTTAGATATTATAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTataata                                                                                      <  2:764695/91‑1 (MQ=255)

      gAATTGAAATAGAATAAATTTAGATATTATAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTataata                                                                                      <  1:1842643/91‑1 (MQ=255)

      gAATTGAAATAGAATAAATTTAGATATTATAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTataata                                                                                      <  2:5175576/91‑1 (MQ=255)

        aTTGAAATAGAATAAATTTAGATATTATAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATaga                                                                                    <  2:609534/91‑1 (MQ=255)

         ttGAAATAGAATAAATTTAGATATTATAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATagag                                                                                   >  1:1141358/1‑91 (MQ=255)

          tGAAATAGAATAAATTTAGATATTATAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAgaga                                                                                  <  2:467239/91‑1 (MQ=255)

          tGAAATAGAATAAATTTAGATATTATAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAgaga                                                                                  >  2:1706595/1‑91 (MQ=255)

           gAAATAGAATAAATTTAGATATTATAAAAACAGCAGTGAAGTTAACTATAACTATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGaa                                                                                 >  1:4669602/1‑91 (MQ=255)

           gAAATAGAATAAATTTAGATATTATAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGaa                                                                                 >  1:2197520/1‑91 (MQ=255)

           gAAATAGAATAAATTTAGATATTATAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGaa                                                                                 >  2:2478599/1‑91 (MQ=255)

             aaTAGAATAAATTTAGATATTATAAAAACAGCAGTGAAGTTAACTATAACAGTAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAAc                                                                               >  1:4172411/1‑91 (MQ=255)

              aTAGAATAAATTTAGATATTATAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACg                                                                              <  2:1417860/91‑1 (MQ=255)

                 gAATAAATTTAGATATTATAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTaa                                                                           <  1:2495253/91‑1 (MQ=255)

                  aaTAAATTTAGATATTATAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTATTCACTGCTCTTTGTATTATAATAGAGAAACGTAAg                                                                          >  2:5556454/1‑91 (MQ=255)

                   aTAAATTTAGATATTATAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGa                                                                         >  2:2193758/1‑91 (MQ=255)

                   aTAAATTTAGATATTATAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGa                                                                         >  1:4073975/1‑91 (MQ=255)

                   aTAAATTTAGATATTATAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGa                                                                         >  2:5079398/1‑91 (MQ=255)

                     aaaTTTAGATATTATAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAATGTAAGACg                                                                       >  2:4769930/1‑91 (MQ=255)

                     aaaTTTAGATATTATAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACg                                                                       >  2:50142/1‑91 (MQ=255)

                     aaaTTTAGATATTATAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACg                                                                       <  2:4879294/91‑1 (MQ=255)

                     aaaTTTAGATATTATAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACg                                                                       >  1:2999523/1‑91 (MQ=255)

                     aaaTTTAGATATTATAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACg                                                                       <  1:2446925/91‑1 (MQ=255)

                     aaaTTTAGATATGATAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACg                                                                       <  2:3733085/91‑1 (MQ=255)

                      aaTTTAGATATTATAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACgg                                                                      <  2:3026517/91‑1 (MQ=255)

                         ttAGATATTATAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAg                                                                   >  1:813073/1‑91 (MQ=255)

                           aGATATTATAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGa                                                                 >  1:2119611/1‑91 (MQ=255)

                            gATATTATAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGAc                                                                <  2:3127159/91‑1 (MQ=255)

                             atatTATAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGAct                                                               >  2:4359881/1‑91 (MQ=255)

                             atatTATAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGAct                                                               <  1:3952440/91‑1 (MQ=255)

                              tattatAAAAACTGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGTTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGActt                                                              <  2:3604514/91‑1 (MQ=255)

                              tattatAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGActt                                                              <  2:2007948/91‑1 (MQ=255)

                              tattatAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGActt                                                              <  2:5303132/91‑1 (MQ=255)

                               attatAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGActtc                                                             <  2:224874/91‑1 (MQ=255)

                                ttatAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGActtct                                                            <  1:1009836/91‑1 (MQ=255)

                                 tataAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCAATGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGActtctt                                                           >  2:240538/1‑91 (MQ=255)

                                  ATAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTa                                                          <  1:1217219‑M1/91‑1 (MQ=255)

                                     AAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTAttt                                                       <  2:3931419‑M1/91‑1 (MQ=255)

                                     AAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTAttt                                                       >  1:2470031‑M1/1‑91 (MQ=255)

                                       AACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAg                                                     <  2:4918760‑M1/91‑1 (MQ=255)

                                          AGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAg                                                  >  2:4686158‑M1/1‑91 (MQ=255)

                                          AGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAg                                                  >  2:2805052‑M1/1‑91 (MQ=255)

                                          AGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTAATTAGGAg                                                  <  1:4500806‑M1/91‑1 (MQ=255)

                                           GCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGt                                                 <  1:72643‑M1/91‑1 (MQ=255)

                                             AGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTAt                                               >  2:2326392‑M1/1‑91 (MQ=255)

                                             AGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTAt                                               <  2:1242112‑M1/91‑1 (MQ=255)

                                             AGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTAt                                               <  2:2631721‑M1/91‑1 (MQ=255)

                                               TGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATcc                                             <  1:5413746‑M1/91‑1 (MQ=255)

                                                 AAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTg                                           >  1:3410784‑M1/1‑91 (MQ=255)

                                                  AGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGa                                          >  1:888147‑M1/1‑91 (MQ=255)

                                                   gaaaactattgttatagttaacttcactgctgtttttatTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGAt                                         >  1:5003406‑M2/40‑91 (MQ=255)

                                                   GTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGAt                                         >  2:2757659‑M1/1‑91 (MQ=255)

                                                    ttAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGAtt                                        >  2:5647687/1‑91 (MQ=255)

                                                     tAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGAttt                                       >  2:2703012/1‑91 (MQ=255)

                                                     tAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGAttt                                       <  2:2514019/91‑1 (MQ=255)

                                                     tAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGAttt                                       >  2:3467479/1‑91 (MQ=255)

                                                     aaactattgttatagttaacttcactgctgtttttatTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGAttt                                       >  2:4546927‑M2/38‑91 (MQ=255)

                                                      aaCTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTa                                      >  1:309279/1‑91 (MQ=255)

                                                      aaCTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTa                                      >  1:5639907/1‑91 (MQ=255)

                                                      aaCTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTa                                      <  1:1294078/91‑1 (MQ=255)

                                                       aCTATAACAATAGTTTTCTTCTCAGCTGTTTTTATTATAATAGAGAAACGTAACACGGTAGGACTTCTTATTTAGGAGTACCCTGATTTaa                                     >  2:3258192/1‑91 (MQ=255)

                                                        cTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAAt                                    <  1:3424398/91‑1 (MQ=255)

                                                         tataACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATg                                   <  1:4249515/91‑1 (MQ=255)

                                                            aaCAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTa                                >  1:2761650/1‑91 (MQ=255)

                                                             aCAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTaa                               >  2:4503883/1‑91 (MQ=255)

                                                                  aGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAACAAt                          >  2:3371655/1‑91 (MQ=255)

                                                                  aGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAACAAt                          <  1:4394442/91‑1 (MQ=255)

                                                                   gTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAACAATa                         <  1:240967/91‑1 (MQ=255)

                                                                     tttCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAACAATACg                       <  2:5124992/91‑1 (MQ=255)

                                                                     tttCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAACAATACg                       <  2:1579860/91‑1 (MQ=255)

                                                                     tttCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAACAATACg                       <  1:2895417/91‑1 (MQ=255)

                                                                       tcttcACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAACAATACGtt                     >  1:3679006/1‑91 (MQ=255)

                                                                        cttcactgctgtttttatTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAACAATACGttt                    >  1:1054579‑M2/19‑91 (MQ=255)

                                                                        cttcactgctgtttttatTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAACAATACGttt                    <  2:3634223‑M2/73‑1 (MQ=255)

                                                                        cttcactgctgtttttatTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAACAATACGttt                    <  1:3209507‑M2/73‑1 (MQ=255)

                                                                        cttcactgctgtttttatTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAACAATACGttt                    <  1:3554600‑M2/73‑1 (MQ=255)

                                                                        cttcactgctgtttttatTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAACAATACGttt                    >  1:430960‑M2/19‑91 (MQ=255)

                                                                         ttcactgctgtttttatTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAACAATACGtttt                   <  1:2601713‑M2/74‑1 (MQ=255)

                                                                         ttcactgctgtttttatTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAACAATACGtttt                   >  1:52662‑M2/18‑91 (MQ=255)

                                                                           cactgctgtttttatTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAACAATACGTTTTCg                 <  1:1645166‑M2/76‑1 (MQ=255)

                                                                            actgctgtttttatTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAACAATACGTTTTCgg                <  1:61657‑M2/77‑1 (MQ=255)

                                                                              ttttgtttttatAATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAACAATACGTTTTCGGAt              >  2:2044463‑M2/13‑91 (MQ=255)

                                                                               gctgtttttatTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAACAATACGTTTTCGGAtt             >  2:1656284‑M2/12‑91 (MQ=255)

                                                                                ctgtttttatTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAACAATACGTTTTCGGATTg            <  1:1413736‑M2/81‑1 (MQ=255)

                                                                                  gtttttatTATAATAGAGAAACGTAAGACGGTCGGACTTCTTATTTAGGAGTATCCTGATTCAATGTTAAACAATACGTTTTCGGCTTCaa          >  2:4076020‑M2/9‑91 (MQ=255)

                                                                                  gtttttatTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAACAATACGTTTTCGGATTGaa          >  2:1067944‑M2/9‑91 (MQ=255)

                                                                                  gtttttatTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAACAATACGTTTTCGGATTGaa          >  2:1264106‑M2/9‑91 (MQ=255)

                                                                                  gTTTTTATTCTAATAGAGATACGTGAGGCGGTGAGACTTCTTATTTACGGGTAGCCTGAGTTAATGTTAAACAATGCGTTTTCGGATTGaa          <  2:4574237/91‑1 (MQ=255)

                                                                                   tttttatTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAACAATACGTTTTCGGATTGAAc         <  1:2010105‑M2/84‑1 (MQ=255)

                                                                                     tttatTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAACAATACGTTTTCGGATTGAACCg       <  2:3560584‑M2/86‑1 (MQ=255)

                                                                                     tttatTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAACAATACGTTTTCGGATTGAACCg       >  1:2426440‑M2/6‑91 (MQ=255)

                                                                                     tttatTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAACAATACGTTTTCGGATTGAACCg       <  1:4850854‑M2/86‑1 (MQ=255)

                                                                                       tatTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAACAATACGTTTTCGGATTGAACCGGa     >  2:81979‑M2/4‑91 (MQ=255)

                                                                                         tTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAACAATACGTTTTCGGATTGAACCGGaaa   <  1:2348459‑M2/90‑1 (MQ=255)

                                                                                         tTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAACAATACGTTTTCGGATTGAACCGGaaa   <  2:5306073‑M2/90‑1 (MQ=255)

                                                                                          tataATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAACAATACGTTTTCGGATTGAACCGGAAAt  <  1:2062323/91‑1 (MQ=255)

                                                                                          tataATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAACAATACGTTTTCGGATTGAACCGGAAAt  <  1:3467256/91‑1 (MQ=255)

TTAAAGGAATTGAAATAGAATAAATTTAGATATTATAAAAACAGCAGTGAAGTTAACTATAACAATAGTTTTCTTCACTGCTGTTTTTATTATAATAGAGAAACGTAAGACGGTAGGACTTCTTATTTAGGAGTATCCTGATTTAATGTTAAACAATACGTTTTCGGATTGAACCGGAAAT  >  USA300TCH1516_ALE/160969‑161149

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.