BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	399691 =	297 (1.030)	16 (0.060)	9/138	NT	6.5%	coding (1712/1713 nt)	efeU	Ferrous iron permease EfeU
*	?	USA300TCH1516_ALE	399718 =	206 (0.830)	16 (0.060)	9/138	NT	6.5%	intergenic (+26/+66)	efeU/tatC2	Ferrous iron permease EfeU/Sec‑independent protein translocase protein TatCy

Only 100 of 345 total aligned reads displayed.

ATTGATAGCACAAGGTGCTTATATTATGGTAGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCATTGATTCGTATAAGGTTAATGTGTTGGCGGTTTGCCTCGG  >  USA300TCH1516_ALE/399629‑399808

 ttGATAGCACAAGGTGCTTATATTATGGTAGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTttgt                                                                                          <  2:3387005/91‑1 (MQ=255)

 ttGATAGCACAAGGTGCTTATATTATGGTAGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTttgt                                                                                          <  1:4262704/91‑1 (MQ=255)

  tGATAGCACAAGGTGCTTATATTATGGTAGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTttgtt                                                                                         >  1:2548431/1‑91 (MQ=255)

   gATAGCACAAGGTGCTTATATTATGGTAGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTttgttg                                                                                        >  2:2707683/1‑91 (MQ=255)

    aTAGCACAAGGTGCTTATATTATGGTAGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGc                                                                                       <  1:5446550/91‑1 (MQ=255)

     tAGCACAAGGTGCTTATATTATGGTAGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCt                                                                                      >  2:4475100/1‑91 (MQ=255)

     tAGCACAAGGTGCTTATATTATGGTAGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCt                                                                                      >  2:430831/1‑91 (MQ=255)

     tAGCACAAGGTGCTTATATTATGGTAGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCt                                                                                      <  1:2888429/91‑1 (MQ=255)

      aGCACAAGGTGCTTATATTATGGTAGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCta                                                                                     >  2:2546580/1‑91 (MQ=255)

      aGCACAAGGTGCTTATATTATGGTAGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCta                                                                                     >  2:3788719/1‑91 (MQ=255)

       gCACAAGGTGCTTATATTATGGTAGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCtat                                                                                    <  1:3735855/91‑1 (MQ=255)

           aaGGTGCTTATATTATGGTAGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTg                                                                                >  2:2757184/1‑91 (MQ=255)

            aGGTGCTTATATTATGGTCGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTgg                                                                               <  1:5556616/91‑1 (MQ=255)

            aGGTGCTTATATTATGGTAGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTTTTATATTgg                                                                               >  2:3868814/1‑91 (MQ=255)

            aGGTGCTTATATTATGGTAGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTgg                                                                               <  1:2658119/91‑1 (MQ=255)

             ggTGCTTATATTATGGTAGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGa                                                                              >  1:2857994/1‑91 (MQ=255)

             gctgtgattatcgttatactgcaataccgaatatttccaatatagcaacaaaaaaacaggccgagtgcctgttttttTGTTGCTATATTgg                                                                               <  1:825229‑M2/14‑1 (MQ=255)

               tGCTTATATTATGGTAGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGaaa                                                                            >  1:4153895/1‑91 (MQ=255)

                 cTTATATTATGGTAGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAata                                                                          <  1:1096024/91‑1 (MQ=255)

                  ttATATTATGGTAGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAatat                                                                         <  2:3259548/91‑1 (MQ=255)

                  ttATATTATGGTAGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAatat                                                                         >  2:3166386/1‑91 (MQ=255)

                      attatGGTAGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCgg                                                                     <  1:2121245/91‑1 (MQ=255)

                      attatGGTAGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCgg                                                                     >  1:1312486/1‑91 (MQ=255)

                        tatGGTAGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTa                                                                   <  2:3543214/91‑1 (MQ=255)

                         atGGTAGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTAt                                                                  <  1:711729/91‑1 (MQ=255)

                          tGGTAGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTAtt                                                                 <  2:3302988/91‑1 (MQ=255)

                           ggTAGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTg                                                                <  1:3612958/91‑1 (MQ=255)

                           ggTAGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTg                                                                <  1:3870283/91‑1 (MQ=255)

                            gTAGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGc                                                               <  1:1399721/91‑1 (MQ=255)

                             tAGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCa                                                              <  2:1969734/91‑1 (MQ=255)

                              aGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAg                                                             >  1:4018944/1‑91 (MQ=255)

                                ttGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGta                                                           >  2:2658295/1‑91 (MQ=255)

                                  gCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGATTTCCTGATTTTTAGTTGCTATATAGGAAATATTCGGTATTGCTGtatt                                                         >  2:5655925/1‑90 (MQ=255)

                                  aataccgaatatttccaatatagcaacaAAAAAACAGGCACTCG‑GCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGtata                                                         <  1:3041033‑M1/63‑1 (MQ=255)

                                   cTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATaa                                                        >  2:2122446/1‑91 (MQ=255)

                                    tATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAAc                                                       <  1:2356551/91‑1 (MQ=255)

                                    tATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAAc                                                       >  2:2218579/1‑91 (MQ=255)

                                     aTCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACg                                                      >  1:1585480/1‑91 (MQ=255)

                                      tCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTTGAAATATTCGGTATTGCAGTATAACGa                                                     >  1:4527934/1‑91 (MQ=255)

                                      tCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGa                                                     >  2:5108478/1‑91 (MQ=255)

                                      tCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGa                                                     <  2:5349147/91‑1 (MQ=255)

                                       cTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGAt                                                    <  1:3174556/91‑1 (MQ=255)

                                        ttAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATa                                                   >  2:1661205/1‑91 (MQ=255)

                                         tAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTTTATTGGAAATATTCGGTATTGCAGTATAACGATaa                                                  <  1:3010691/91‑1 (MQ=255)

                                         tAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTTGAAATATTCGGTATTGCAGTATAACGATaa                                                  >  2:3506811/1‑91 (MQ=255)

                                         tAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATaa                                                  >  1:987168/1‑91 (MQ=255)

                                         tAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATaa                                                  >  1:5201291/1‑91 (MQ=255)

                                         tAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATaa                                                  <  1:4391431/91‑1 (MQ=255)

                                          aaTCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAAt                                                 <  1:1686482/91‑1 (MQ=255)

                                            tCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATca                                               <  1:2049618/91‑1 (MQ=255)

                                             cTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTTGAAATATTCGGTATTTCAGTATATCGATAATcac                                              >  2:153628/1‑91 (MQ=255)

                                             cTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATcac                                              <  1:1712677/91‑1 (MQ=255)

                                               ttaaatttaaaAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAg                                            >  2:536748/1‑91 (MQ=255)

                                               ttaaatttaaaAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAg                                            <  2:1793363/91‑1 (MQ=255)

                                                taaatttaaaAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGc                                           >  2:1313220/1‑91 (MQ=255)

                                                 aaatttaaaAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCa                                          >  2:729138/1‑91 (MQ=255)

                                                  aatttaaaAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCAt                                         <  2:4920127/91‑1 (MQ=255)

                                                  aatttaaaAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCAt                                         >  1:5031315/1‑91 (MQ=255)

                                                  aatttaaaAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCAt                                         <  1:3801276/91‑1 (MQ=255)

                                                     ttaaaAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCATTGa                                      <  2:5479091/91‑1 (MQ=255)

                                                     ttaaaAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCATTGa                                      <  2:4231214/91‑1 (MQ=255)

                                                     ttaaaAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCATTGa                                      <  2:40048/91‑1 (MQ=255)

                                                     ttaaaAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCATTGa                                      <  2:833152/91‑1 (MQ=255)

                                                      taaaaaataaaaaaCAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCATTGAt                                     <  1:5338191/91‑1 (MQ=255)

                                                      taaaaaataaaaaaCAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCATTGAt                                     <  1:3466402/91‑1 (MQ=255)

                                                       aaaaaataaaaaaCAGGC‑CGCGTGCACGTTTTTTCGTTGCTATCTTGGAAATATTCGGTATTGCAGTATAACCATAATCACAGCATTGAtt                                    >  2:3350923/1‑91 (MQ=255)

                                                         aaaataaaaaaCAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCATTGATTCg                                  >  2:1032141/1‑91 (MQ=255)

                                                            ataaaaaaCAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCATTGATTCGtat                               >  2:4784356/1‑91 (MQ=255)

                                                            ataaaaaaCAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCATTGATTCGtat                               <  2:1170157/91‑1 (MQ=255)

                                                                  AACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCATTGATTCGTATAAGGtt                         <  1:4931819‑M1/91‑1 (MQ=255)

                                                                  AACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCATTGATTCGTATAAGGtt                         >  1:1989292‑M1/1‑91 (MQ=255)

                                                                  AACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCATTGATTCGTATAAGGtt                         <  1:1133568‑M1/91‑1 (MQ=255)

                                                                   ACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCATTGATTCGTATAAGGTTa                        <  1:4430663‑M1/91‑1 (MQ=255)

                                                                   ACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCATTGATTCGTATAAGGTTa                        <  2:1705653‑M1/91‑1 (MQ=255)

                                                                       ggcactcggcctgttttttTGTTGCTATATTGGAAATATTAGGTATTGCAGTATAACGATAATCACAGCATTGATTCGTATAAGGATAAtg                     >  1:1815122‑M2/20‑91 (MQ=255)

                                                                       GC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCATTGATTCGTATAAGGTTAAtgt                    >  2:4650973‑M1/1‑91 (MQ=255)

                                                                        gcactcggcctgttttttTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCATTGATTCGTATAAGGTTAAtgt                    >  1:2326048‑M2/19‑91 (MQ=255)

                                                                          cGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCATTGATTCGTATAAGGTTAATgtgt                  <  1:1487113/91‑1 (MQ=255)

                                                                          cGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCATTGATTCGTATAAGGTTAATgtgt                  <  2:594227/91‑1 (MQ=255)

                                                                          cGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCATTGATTCGTATAAGGTTAATgtgt                  <  1:1915090/91‑1 (MQ=255)

                                                                          actcggcctgttttttTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCATTGATTCGTATAAGGTTAATgtgt                  >  1:1896571‑M2/17‑91 (MQ=255)

                                                                           gAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCATTGATTCGTATAAGGTTAATGTGtt                 >  1:50554/1‑91 (MQ=255)

                                                                            aGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCATTGATTCGTATAAGGTTAATGTGTTg                <  1:3292735/91‑1 (MQ=255)

                                                                              tGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCATTGATTCGTATAAGGTTAATGTGTTGGc              >  1:4352576/1‑91 (MQ=255)

                                                                               gcctgttttttTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCATTGATTCGTATAAGGTTAATGTGTTGGCg             <  2:1473028‑M2/80‑1 (MQ=255)

                                                                               gcctgttttttTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCATTGATTCGTATAAGGTTAATGTGTTGGCg             <  2:303356‑M2/80‑1 (MQ=255)

                                                                                cctgttttttTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCATTGATTCGTATAAGGTTAATGTGTTGGCgg            >  2:2063237‑M2/11‑91 (MQ=255)

                                                                                cctgttttttTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCATTGATTCGTATAAGGTTAATGTGTTGGCgg            <  1:960416‑M2/81‑1 (MQ=255)

                                                                                 ctgttttttTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCATTGATTCGTATAAGGTTAATGTGTTGGCGGt           <  2:3676473‑M2/82‑1 (MQ=255)

                                                                                 ctgttttttTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCATTGATTCGTATAAGGTTAATGTGTTGGCGGt           <  2:508939‑M2/82‑1 (MQ=255)

                                                                                 ctgttttttTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCATTGATTCGTATAAGGTTAATGTGTTGGCGGt           >  1:1000580‑M2/10‑91 (MQ=255)

                                                                                 ctgttttttTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCATTGATTCGTATAAGGTTAATGTGTTGGCGGt           <  1:4792878‑M2/82‑1 (MQ=255)

                                                                                  ggttttttTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCATTGATTCGTATAAGGTTAATGTGTTGGCGGtt          <  2:3100877‑M2/83‑1 (MQ=255)

                                                                                      ttttTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCATTGATTCGTATAAGGTTAATGTGTTGGCGGTTTGcc      <  2:3913640‑M2/87‑1 (MQ=255)

                                                                                      ttttTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCATTGATTCGTATAAGGTTAATGTGTTGGCGGTTTGcc      <  2:2951593‑M2/87‑1 (MQ=255)

                                                                                      ttttTGTTGCTATATGGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCATTGATTCGTATAAGGTTAATGTGTTGGCGGTTTGcc      <  2:5536659‑M2/87‑1 (MQ=255)

                                                                                       tttTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCATTGATTCGTATAAGGTTAATGTGTTGGCGGTTTGCCt     <  1:2212147‑M2/88‑1 (MQ=255)

                                                                                         tTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCATTGATTCGTATAAGGTTAATGTGTTGGCGGTTTGCCTCg   <  2:2925550‑M2/90‑1 (MQ=255)

                                                                                          tgttgCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCATTGATTCGTATAAGGTTAATGTGTTGGCGGTTTGCCTCgg  <  1:3330680/91‑1 (MQ=255)

                                                                                          tgttgCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCATTGATTCGTATAAGGTTAATGTGTTGGCGGTTTGCCTCgg  <  2:5262700/91‑1 (MQ=255)

ATTGATAGCACAAGGTGCTTATATTATGGTAGTTGCTATCTTAATCTTTAAATTTAAAAAATAAAAAACAGGC‑CGAGTGCCTGTTTTTTTGTTGCTATATTGGAAATATTCGGTATTGCAGTATAACGATAATCACAGCATTGATTCGTATAAGGTTAATGTGTTGGCGGTTTGCCTCGG  >  USA300TCH1516_ALE/399629‑399808

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.