BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2062959 =	321 (1.120)	13 (0.050)	7/132	NT	5.3%	intergenic (+40/+150)	pheA/sdcS	P‑protein/Sodium‑dependent dicarboxylate transporter SdcS
*	?	USA300TCH1516_ALE	2063001 =	198 (0.840)	13 (0.050)	7/132	NT	5.3%	intergenic (+82/+108)	pheA/sdcS	P‑protein/Sodium‑dependent dicarboxylate transporter SdcS

Only 100 of 363 total aligned reads displayed.

TTTAATTAAACTTTATTTTCTAGGTTCTACAATTTAAATAAAATAAAGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCTAATGTAACCTTTTATTTTTC  >  USA300TCH1516_ALE/2062911‑2063091

 ttaattaaACTTTATTTTCTAGGTTCTACAATTTAAATAAAATAAAGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGActtt                                                                                           >  2:1504874/1‑91 (MQ=255)

 ttaattaaACTTTATTTTCTAGGTTCTACAATTTAAATAAAATAAAGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGActtt                                                                                           <  2:4903041/91‑1 (MQ=255)

 ttaattaaACTTTATTTTCTAGGTTCTACAATTTAAATAAAATAAAGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGActtt                                                                                           <  1:3730163/91‑1 (MQ=255)

 ttaattaaACTTTATTTTCTAGGTTCTACAATTTAAATAAAATAAAGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGActtt                                                                                           <  1:3448045/91‑1 (MQ=255)

 ttaattaaACTTTAGTTTCTAGTTTCAACAATTTAAATAAAATAAAGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGActtt                                                                                           <  2:5555202/91‑1 (MQ=255)

    attaaACTTTATTTTCTAGGTTCTACAATTTAAATAAAATAAAGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGActttctt                                                                                        >  1:1078535/1‑91 (MQ=255)

    attaaACTTTATTTTCTAGGTTCTACAATTTAAATAAAATAAAGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGActttctt                                                                                        >  2:1742274/1‑91 (MQ=255)

    attaaACTTTATTTTCTAGGTTCTACAATTTAAATAAAATAAAGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGActttctt                                                                                        >  1:215362/1‑91 (MQ=255)

         aCTTTATTTTCTAGGTTCTACAATTTAAATAAAATAAAGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTtttgtt                                                                                   >  2:4678862/1‑91 (MQ=255)

            ttATTTTCTAGGTTCTACAATTTAAATAAAATAAAGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTttgtttgt                                                                                <  1:1987361/91‑1 (MQ=255)

             tATTTTCTAGGTTCTACAATTTAAATAAAATAAAGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTa                                                                               >  2:2453126/1‑91 (MQ=255)

              aTTTTCTAGGTTCTACAATTTAAATAAAATAAAGAGTCAACCAAGTGTTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTAt                                                                              <  2:5465627/91‑1 (MQ=255)

              aTTTTCTAGGTTCTACAATTTAAATAAAATAAAGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTAt                                                                              >  1:524588/1‑91 (MQ=255)

              aTTTTCTAGGTTCTACAATTTAAATAAAATAAAGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTAt                                                                              <  2:345075/91‑1 (MQ=255)

                tttCTAGGTTCTACAATTTAAATAAAATAAAGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTg                                                                            <  2:3852199/91‑1 (MQ=255)

                 ttCTAGGTTCTACAATTTAAATAAAATAAAGAGTCAACCAAGGATTAAAATAGTAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGt                                                                           >  2:4003276/1‑91 (MQ=255)

                 ttCTAGGTTCTACAATTTAAATAAAATAAAGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGt                                                                           >  1:3272887/1‑91 (MQ=255)

                  tCTAGGTTCTACAATTTAAATAAAATAAAGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGtt                                                                          <  1:2396407/91‑1 (MQ=255)

                    tAGGTTCTACAATTTAAATAAAATAAAGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGtttt                                                                        >  1:3166931/1‑91 (MQ=255)

                     aGGTTCTACAATTTAAATAAAATAAAGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGttttt                                                                       >  1:4769432/1‑91 (MQ=255)

                     aGGTTCTACAATTTAAATAAAATAAAGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGttttt                                                                       >  2:621644/1‑91 (MQ=255)

                       gTTCTACAATTTAAATAAAATAAAGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTac                                                                     >  1:5151623/1‑91 (MQ=255)

                       gTTCTACAATTTAAATAAAATAAAGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTac                                                                     <  2:5608817/91‑1 (MQ=255)

                        ttCTACAATTTAAATAAAATAAAGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTaca                                                                    <  2:357244/91‑1 (MQ=255)

                         tCTACAATTTAAATAAAATAAAGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTacac                                                                   <  1:2743698/91‑1 (MQ=255)

                         tCTACAATTTAAATAAAATAAAGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTacac                                                                   <  1:415593/91‑1 (MQ=255)

                         tCTACAATTTAAATAAAATAAAGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTacac                                                                   <  1:409357/91‑1 (MQ=255)

                          cTACAATTTAAATAAAATAAAGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACg                                                                  <  2:2510551/91‑1 (MQ=255)

                          cTACAATTTAAATAAAATAAAGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACg                                                                  <  2:202401/91‑1 (MQ=255)

                             cAATTTAAATAAAATAAAGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGAtg                                                               >  2:1030984/1‑91 (MQ=255)

                              aaTTTAAATAAAATAAAGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGAtgc                                                              <  1:1742131/91‑1 (MQ=255)

                                tttAAATAAAATAAAGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGAtgctg                                                            >  1:4466245/1‑91 (MQ=255)

                                tttAAATAAAATAAAGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGAtgctg                                                            >  1:4648226/1‑91 (MQ=255)

                                tttAAATAAAATAAAGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGAtgctg                                                            >  1:3541649/1‑91 (MQ=255)

                                    aataaaataaAGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGt                                                        <  1:3918064/91‑1 (MQ=255)

                                    aataaaataaAGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGt                                                        >  1:788336/1‑91 (MQ=255)

                                     ataaaataaaGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGta                                                       <  1:2202485/91‑1 (MQ=255)

                                      taaaataaaGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGtat                                                      <  1:5334386/91‑1 (MQ=255)

                                      taaaataaaGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGtat                                                      <  1:1850432/91‑1 (MQ=255)

                                      taaaataaaGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGtat                                                      <  2:5281708/91‑1 (MQ=255)

                                       aaaataaaGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGtata                                                     >  1:1428494/1‑91 (MQ=255)

                                       aaaataaaGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGtata                                                     <  2:3971849/91‑1 (MQ=255)

                                         aataaaGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACg                                                   <  1:650035/91‑1 (MQ=255)

                                         aataaaGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACg                                                   <  1:1386917/91‑1 (MQ=255)

                                         aataaaGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACg                                                   <  1:4334473/91‑1 (MQ=255)

                                           taaaGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGtt                                                 <  1:2259985/91‑1 (MQ=255)

                                              agagTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCg                                              >  1:5597896/1‑91 (MQ=255)

                                              agagTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCg                                              >  2:2234070/1‑91 (MQ=255)

                                              agagTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCg                                              <  1:1830243/91‑1 (MQ=255)

                                               gagTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGt                                             >  2:4335161/1‑91 (MQ=255)

                                               gagTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGt                                             >  2:3783963/1‑91 (MQ=255)

                                               gagTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGt                                             >  1:57020/1‑91 (MQ=255)

                                                 GTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTa                                           >  2:4577792‑M1/1‑91 (MQ=255)

                                                 GTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTa                                           >  2:2699605‑M1/1‑91 (MQ=255)

                                                  tcaaccaaggatggattcctattttaatccttggttgactTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTAc                                          >  1:2828445‑M2/41‑91 (MQ=255)

                                                  TCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTAc                                          <  2:4829825‑M1/91‑1 (MQ=255)

                                                  TCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTAc                                          <  1:259472‑M1/91‑1 (MQ=255)

                                                    AACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCa                                        >  2:1138968‑M1/1‑91 (MQ=255)

                                                    AACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCa                                        >  1:2962506‑M1/1‑91 (MQ=255)

                                                     ACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCAc                                       >  2:4400270‑M1/1‑91 (MQ=255)

                                                     ACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCAc                                       >  1:842602‑M1/1‑91 (MQ=255)

                                                     ACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCAc                                       <  2:4796277‑M1/91‑1 (MQ=255)

                                                        AAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCg                                    >  1:4908690‑M1/1‑91 (MQ=255)

                                                         AGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGt                                   >  1:3285579‑M1/1‑91 (MQ=255)

                                                           GATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTcc                                 >  2:827170‑M1/1‑91 (MQ=255)

                                                           GATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTcc                                 >  2:1184462‑M1/1‑91 (MQ=255)

                                                             TTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGtttt                                                                        >  2:4188773‑M1/1‑50 (MQ=255)

                                                              tAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAg                              <  2:1449521/91‑1 (MQ=255)

                                                              ggattcctattttaatccttggttgactTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAg                              >  2:3333415‑M2/29‑91 (MQ=255)

                                                               aaaaTAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGc                             <  2:2762922/91‑1 (MQ=255)

                                                                aaaTAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCa                            >  1:1248279/1‑91 (MQ=255)

                                                                aaaTAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCa                            >  2:4449115/1‑91 (MQ=255)

                                                                 aaTAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCaa                           <  1:910280/91‑1 (MQ=255)

                                                                  aTAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAAt                          >  2:1330217/1‑91 (MQ=255)

                                                                    aGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTg                        <  2:5431665/91‑1 (MQ=255)

                                                                     ggAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGc                       >  1:1036953/1‑91 (MQ=255)

                                                                     ggAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGc                       <  2:2989162/91‑1 (MQ=255)

                                                                      gAATCCATCCTTGGTTGACTTTCTTTTGTTTATATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCt                      >  1:5511158/1‑91 (MQ=255)

                                                                        atccatccTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCTaa                    <  1:5061876/91‑1 (MQ=255)

                                                                          ccatccTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCTAATg                  >  2:399145/1‑91 (MQ=255)

                                                                          ccatccTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCTAATg                  >  1:1308076/1‑91 (MQ=255)

                                                                           catccTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCTAATGt                 <  1:1606311/91‑1 (MQ=255)

                                                                           catccATGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGTGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCTAATGt                 >  2:1982883/1‑91 (MQ=255)

                                                                            atccttggttgactTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCTAATGTa                >  2:1794379‑M2/15‑91 (MQ=255)

                                                                               cttggttgcctTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCTAATGTAAcc             <  2:140335‑M2/80‑1 (MQ=255)

                                                                               cttggttgactTTCTTTTGTTTGTATTTTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCTAATGTAAcc             >  2:370209‑M2/12‑91 (MQ=255)

                                                                               cttggttgactTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCTAATGTAAcc             <  2:1304102‑M2/80‑1 (MQ=255)

                                                                                 tggttgactTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCTAATGTAACCtt           <  2:5181570‑M2/82‑1 (MQ=255)

                                                                                 tggttgactTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCTAATGTAACCtt           <  2:4377105‑M2/82‑1 (MQ=255)

                                                                                 tggttgactTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCTAATGTAACCtt           <  2:1373489‑M2/82‑1 (MQ=255)

                                                                                 tggttgactTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCTAATGTAACCtt           <  2:3273550‑M2/82‑1 (MQ=255)

                                                                                  ggttgactTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCTAATGTAACCttt          <  2:4854258‑M2/83‑1 (MQ=255)

                                                                                   gttgactTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCTAATGTAACCtttt         >  1:4547759‑M2/8‑91 (MQ=255)

                                                                                     tgactTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCTAATGTAACCTTTTAt       <  2:5221625‑M2/86‑1 (MQ=255)

                                                                                      gactTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCTAATGTAACCTTTTAtt      >  1:4941783‑M2/5‑91 (MQ=255)

                                                                                        ctTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCTAATGTAACCTTTTAtttt    >  2:2294332‑M2/3‑91 (MQ=255)

                                                                                        ctTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCTAATGTAACCTTTTAtttt    <  2:3637631‑M2/89‑1 (MQ=255)

                                                                                        ctTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCTAATGTAACCTTTTAtttt    >  2:211449‑M2/3‑91 (MQ=255)

                                                                                        ctTTCTTTTGGTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCTAATGTAACCTTTTAtttt    <  2:1895153‑M2/89‑1 (MQ=255)

                                                                                         tTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCTAATGTAACCTTTTAttttt   <  1:2927791‑M2/90‑1 (MQ=255)

TTTAATTAAACTTTATTTTCTAGGTTCTACAATTTAAATAAAATAAAGAGTCAACCAAGGATTAAAATAGGAATCCATCCTTGGTTGACTTTCTTTTGTTTGTATTGTTTTTACACGATGCTGCGGTATACGTTTCGTTACCACTCGTCCAAGCAATTGCTAATGTAACCTTTTATTTTTC  >  USA300TCH1516_ALE/2062911‑2063091

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.