| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1525192 = | 148 (0.810) | 7 (0.040) | 7/232 | NT | 5.0% | intergenic (‑265/+57) | asnS/dinG_1 | Asparagine‑‑tRNA ligase/putative ATP‑dependent helicase DinG |
| ? | USA300TCH1516_ALE | 1525239 = | 130 (0.780) | intergenic (‑312/+10) | asnS/dinG_1 | Asparagine‑‑tRNA ligase/putative ATP‑dependent helicase DinG | |||||
TTTTGAACAAACACTTGAAAATTATCGTCAGAAAAAAGGCGACATTCAACAGTTTGGAAAATTATTAAGACAAATTCAAAAAAAGAAAAAGTGAAATACAAAGTAAAATTCTTGTGACATGACATGTGCTATGTTCTGTTACAAGAATTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1525342‑1525192‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acaagaattttACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACGATAATTTTCAAGTGTTTGTTCAAAAAAGTTTTTATAATTACTGTTTATGAGTCGATCATC > USA300TCH1516_ALE/1525239‑1525377 TTTTGAACAAACACTTGAAAATTATCGTCAGAAAAAAGGCGACATTCAACAGTTTGGAAAATTATTAAGACAAATTCAAAAAAAGAAAAAGTGAAATACAAAGTAAAATTCTTGTGACATGACATGTGCTATGTTCTGTTA > 2:94878/1‑141TTTTGAACAAACACTTGAAAATTATCGTCAGAAAAAAGGCGACATTCAACAGTTTGGAAAATTATTAAGACAAATTCAAAAAAAGAAAAAGTGAAATACAAAGTAAAATTCTTGTGACATGACATGTGCTATGTTCTGTTA > 4:527647/1‑141 TTTGAACAAACACTTGAAAATTATCGTCAGAAAAAAGGCGACATTCAACAGTTTGGAAAATTATTAAGACAAATTCAAAAAAAGAAAAAGTGAAATACAAAGTAAAATTCTTGTGACATGACATGTGCTATGTTCTGTTAC < 1:977115/141‑1 TTGAACAAACACTTGAAAATTATCGTCAGAAAAAAGGCGACATTCAACAGTTTGGAAAATTATTAAGACAAATTCAAAAAAAGAAAAAGTGAAATACAAAGTAAAATTCTTGTGACATGACATGTGCTATGTTCTGTTACA < 1:1496029/141‑1 TTGAACAAACACTTGAAAATTATCGTCAGAAAAAAGGCGACATTCAACAGTTTGGAAAATTATTAAGACAAATTCAAAAAAAGAAAAAGTGAAATACAAAGTAAAATTCTTGTGACATGACATGTGCTATGTTCTGTTACA > 4:210094/1‑141 TTGAACAAACACTTGAAAATTATCGTCAGAAAAAAGGCGACATTCAACAGTTTGGAAAATTATTAAGACAAATTCAAAAAAAGAAAAAGTGAAATACAAAGTAAAATTCTTGTGACATGACATGTGCTATGTTCTGTTACA > 2:1432914/1‑141 GAACAAACACTTGAAAATTATCGTCAGAAAAAAGTCGACATTCAACAGTTTGGAAAATTATTAAGACAAATTCAAAAAAAGAAAAAGTGAAATACAAAGTAAAATTCTTGTGACATGACATGTGCTATGTTCTGTTACAAG > 2:290916/1‑141 AACAAACAGTTGAAAATTAAAAAAAAAAAAAAGGCGACATTCAACAGTTTGGAAAATTATTAAGACAAATTCAAAAAAAGAAAAAGTGAAATACAAAGTAAAATTCTTGTGACATGACATGTGCTATGTTCTGTTACAAGA < 2:1028433/141‑1 AACAAACACTTGAAAATTATCGTCAGAAAAAAGGCGACATTCAACAGTTTGGAAAATTATTAAGACAAATTCAAAAAAAGAAAAAGTGAAATACAAAGTAAAATTCTTGTGACATGACATGTGCTATGTTCTGTTACAAGA < 1:1385294/141‑1 AACAAAAACTGGAAAATTATCGAAAGAAAAAAGGCGACATTCAACAGTTTGGAAAATTATTAAGACAAATAAAAAAAAAGAAAAAGTGAAATACAAAGTAAAATTCTTGTGACATGACATGTGCTATGTTCTGTTACAAGA < 2:427004/141‑1 ACAAACACTTGAAAATTATCGTCAGAAAAAAGGCGACATTCAACAGTTTGGAAAATTATTAAGACAAATTCAAAAAAAGAAAAAGTGAAATACAAAGTAAAATTCTTGTGACATGACATGTGCTATGTTCTGTTACAAGAA > 1:553267/1‑141 CAAACACTTGAAAATTATCGTCAGAAAAAAGGCGACATTCAACAGTTTGGAAAATTATTAAGACAAATTCAAAAAAAGAAAAAGTGAAATACAAAGTAAAATTCTTGTGACATGACATGTGCTATGTTCTGTTACAAGAAT > 3:130355/1‑141 CAAACACTTGAAAATTATCGTCAGAAAAAAGGCGACATTCAACAGTTTGGAAAATTATTAAGACAAATTCAAAAAAAGAAAAAGTGAAATACAAAGTAAAATTCTTGTGACATGACATGTGCTATGTTCTGTTACAAGAAT < 1:197536/141‑1 CAAACACTTGAAAATTATCGTCAGAAAAAAGGCGACATTCAACAGTTTGGAAAATTATTAAGACAAATAAAAAAAAAAAAAAAGTGAAATACAAAGTAAAATTCTTGTGACATGACATGTGCTATGTTCTGTTACAAGAAT < 2:825648/141‑1 ACACTTGAAAATTATCGTCAGAAAAAAGGCGACATTCAACAGTTTGGAAAATTATTAAGACAAATTCAAAAAAAGAAAAAGTGAAATACAAAGTAAAATTCTTGTGACATGACATGTGCTATGTTCTGTTACATGAATTTT < 3:625060/141‑1 ACACTTGAAAATTATCGTCAGAAAAAAGGCGACATTCAACAGTTTGGAAAATTATTAAGACAAATTCAAAAAAAGAAAAAGTGAAATACAAAGTAAAATTCTTGTGACATGACATGTGCTATGTTCTGTTACAAGAATTTT < 1:1252771/141‑1 CTTGTGACATGACATGTGCTATGTTCTGTTACAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTACTAATTTTCAAAACTGTTGCCTGTAGCCTTTTTTCTGACGTTAATTTTCAAGTCTTTGTTC > 1:493909/1‑141 GTGACATGACATGTGCTATGTTCTGTTACAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTA < 2:1484058/77‑1 GTGACATGACATGTGCTATGTTCTGTTACAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTA > 1:1484058/1‑77 TGACATGACATGTGCTATGTTCTGTTACAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACGATAATTTTCAAGTGTTTGGTCAAAA > 2:321607/1‑141 ACATGACATGTGCTATGTTCTGTTACAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACGATAATTTTCAAGTGTTTGTTCAAAAAA > 4:145519/1‑141 GCTATGTTCTGTTACAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCG < 2:870530/89‑1 GCTATGTTCTGTTACAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCG > 1:870530/1‑89 ACAAGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACGATAATTTTCAAGTGTTTGTTCAAAAAAGTTTTTATAATTACTGTTTATGAG < 2:1265642/141‑1 atAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATGATTTTCCAAACTGTTGAATGTCGCTTTTTTTCTGACGATATTTTTCAAGAGATTAAAAAAAAAAGTTTTTATAATTACTGTTTATGAGTCG < 2:364453/139‑1 AGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACGATAATTTTCAAGTGTTTGTTCAAAAAAGTTTTTATAATTACTGTTTATGAGTCG < 4:638998/141‑1 AGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACGATAATTTTCAAGTGTTTGTTCAAAAAAGTTTTTATAATTACTGTTTATGAGTCG < 3:48499/141‑1 AGAATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACGATAATTTGCAAGTGTTTGTTCAAAAAAGTTTTTATAATTACTGTTTATGAGTCG < 3:656426/141‑1 AATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTTTTTTTTTTTTTTTCAAGTGTTTGTTTAAAAAAGTTTTTATTATTTCTGTTTTTGAGTTGAT > 2:202237/1‑141 AATTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACGATAATTTTCAAGTGTTTGTTCAAAAATGTTTTTATAATTACTGTTTATGAGTCGAT > 2:620695/1‑141 TTTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACGATAATTTTCAAGTGTTTGTTCAAAAAAGTTTTTATAATTACTGTTTATGAGTCGATCA > 1:554075/1‑141 TTTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACGATAATTTTCAAGTGTTTGTTCAAAAAAGTTTTTATAATTACTGTTTATGAGTCGATCAT > 2:1471040/1‑141 TTACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACGATAATTTTCAAGTGTTTGTTCAAAAAAGTTTTTATAATTACTGTTTATGAGTCGATCATC > 1:1591692/1‑141 TTTTGAACAAACACTTGAAAATTATCGTCAGAAAAAAGGCGACATTCAACAGTTTGGAAAATTATTAAGACAAATTCAAAAAAAGAAAAAGTGAAATACAAAGTAAAATTCTTGTGACATGACATGTGCTATGTTCTGTTACAAGAATTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1525342‑1525192‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acaagaattttACTTTGTATTTCACTTTTTCTTTTTTTGAATTTGTCTTAATAATTTTCCAAACTGTTGAATGTCGCCTTTTTTCTGACGATAATTTTCAAGTGTTTGTTCAAAAAAGTTTTTATAATTACTGTTTATGAGTCGATCATC > USA300TCH1516_ALE/1525239‑1525377 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |