New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2082639 =	149 (0.820)	8 (0.050)	8/242	NT	5.5%	intergenic (+280/+44)	aspC/USA300HOU_RS10520	Aspartate aminotransferase/65 kDa membrane protein
	?	USA300TCH1516_ALE	2082667 =	135 (0.780)					intergenic (+308/+16)	aspC/USA300HOU_RS10520	Aspartate aminotransferase/65 kDa membrane protein

ATGGTTCGTCAAAATATGTAGACTTAAAAACTGAGTATAAAGATGAAAGAGTATTTAAAGCAACTGACATTAAAAAGGTAGATATTGAACTTAAATTCTAATCTTTAATTTTATAATAAGGCATCTCACAATCGTGGGGTGCCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  USA300TCH1516_ALE/2082783‑2082639 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccttATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATACTCAGTTTTTAAGTCTACATATTTTGACGAACCATTTTTAAAATACACTTTATACACT  >  USA300TCH1516_ALE/2082667‑2082806                                                                                                                                                                                                                                                                                               ATGGTTCGTCAAAATATGTAGACTTAAAAACTGAGTATAAAGATGAAAGAGTATTTAAAGCAACTGACATTAAAAAGGTAGATATTGAACTTAAATTCTAATCTTTAATTTTATAATAAGGCATCTCACAATCGTGGGGTG                                                                                                                                                  <  1:329826/141‑1   GGTTCGTCAAAATATGTAGACTTAAAAACTGAGTATAAAGATGAAAGAGTATTTAAAGCAACTGACATTAAAAAGGTAGATATTGAACTTAAATTCTAATCTTTAATTTTATAATAAGGCATCTCACAATCGTGGGGTGCC                                                                                                                                                >  2:896652/1‑141    GTTCGTCAAAATATGTAGACTTAAAAACTGAGTATAAAGATGACAGAGTATTTAAAGCAACTGACATTAAAAAGGTAGATATTGAACTTAAATTCTAATCTTTAATTTTATAATAAGGCATCTCACAATCGTGGGGTGCCT                                                                                                                                               <  4:660990/141‑1    GTTCGTCAAAATATGTAGACTTAAAAACTGAGTATAAAGATGAAAGAGTATTTAAAGCAACTTACATTAAAAAGGTAGATATTGAACTTAAATTCTAATCTTTAATTTTATAATAAGGCATCTCACAATCGTGGGGTGCCT                                                                                                                                               <  2:876368/141‑1    GTTCGTCAAAATATGTAGACTTAAAAACTGAGTATAAAGATGAAAGAGTATTTAAAGCAACTGACATTAAAAAGGTAGATATTGAACTTAAATTCTAATCTTTAATTTTATAATAAGGCATCTCACAATCGTGGGGTGCCT                                                                                                                                               <  4:83843/141‑1    GTTCGTCAAAATATGTAGACTTAAAAACTGAGTATAAAGATGAAAGAGTATTTAAAGCAACTGACATTAAAAAGGTAGATATTGAACTTAAATTCTAATCTTTAATTTTATAATAAGGCATCTCACAATCGTGGGGTGCCT                                                                                                                                               >  3:149733/1‑141    GTTCGTCAAAATATGTAGACTTAAAAACTGAGTATAAAGATGAAAGAGTATTTAAAGCAACTGACATTAAAAAGGTAGATATTGAACTTAAATTCTAATCTTTAATTTTATAATAAGGCATCTCACAATCGTGGGGTGCCT                                                                                                                                               <  2:1139877/141‑1     TTCGTCAAAATATGTAGACTTAAAAACTGAGTATAAAGATGAAAGAGTATTTAAAGCAACTGACATTAAAAAGGTAGATATTGAACTTAAATTCTAATCTTTAATTTTATAATAAGGCATCTCACAATCGTGGGGTGCCTT                                                                                                                                              <  2:1081811/141‑1            AAATATGTAGACTTAAAAACTGAGTATAAAGATGAAAGAGTATTTAAAGCAACTGACATTAAAAAGGTAGATATTGAACTTAAATTCTAATCTTTAATTTTATAATAAGGCACCCCACGATTGTGAGATGCCTTATTATAA                                                                                                                                       <  1:1002069/141‑1                 TGTAGACTTAAAAACTGAGTATAAAGATGAAAGAGTATTTAAAGCAACTGACATTAAAAAGGTAGATATTGAACTTAAATTCTAATCTTTAATTTTATAATAAGGCATCTCACAATCGTGGGGTGCCT                                                                                                                                               >  2:1442964/1‑128                 TGTAGACTTAAAAACTGAGTATAAAGATGAAAGAGTATTTAAAGCAACTGACATTAAAAAGGTAGATATTGAACTTAAATTCTAATCTTTAATTTTATAATAAGGCATCTCACAATCGTGGGGTGCCT                                                                                                                                               <  1:1442964/128‑1                         TAAAAACTGAGTAACAAGTTTAAAGAGTATTTAAAGCAACTGACATTAAAAAGGTAGATATTGAACTTAAATTCTAATCTTTAATTTTATAATAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAG                                                                                                                          <  1:924411/141‑1                                                     ATTTAAAGCAACTGACATTAAAAAGGTAGATATTGAACTTAAATTCTAATCTTTAATTTTATAATAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAA                                                                                              <  1:447976/141‑1                                                                                                                          CATCTCACAATCGTGGGGTGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATACTCAGTTTTTAAGTCTACATATTTTGACGAACCAT                         >  1:220234/1‑141                                                                                                                                  AATCGTGGGGTGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATACTCAGTTTTTAAGTCTACATATTTTGACGAACCA                          <  3:653069/132‑1                                                                                                                                  AATCGTGGGGTGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATACTCAGTTTTTAAGTCTACATATTTTGACGAACCA                          >  4:653069/1‑132                                                                                                                                   ATCGTGGGGTGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAA                                                                              >  1:968115/1‑79                                                                                                                                   ATCGTGGGGTGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAA                                                                              <  2:968115/79‑1                                                                                                                                           attCCTTATTATAAAATTAAAGATGAGGATGTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATACTCATGTGTTAAGTCTACATATGTTGACTAACCATTTTTAAAATACACTTTA        <  2:827005/138‑1                                                                                                                                            TGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATACTCAGTTTTTAAGTCTACATATTTTGACGAACCATTTTTAAAATACACTTTAT       <  3:212651/141‑1                                                                                                                                             GCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATACTCAGTTTTTAAGTCTACATATTTTGACGAACCATTTTTAAAATACACTTTATA      >  1:534923/1‑141                                                                                                                                               CTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATACTCAGTTTTTAAGTCTACATATTTTGACGAACCATTTTTAAAATACACTTTATACA    <  1:1317450/141‑1                                                                                                                                                TTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATACTCAGTTTTTAAGTCTACATATTTTGACGAACCATTTTTAAAATACACTTTATACAC   <  2:317712/141‑1                                                                                                                                                TTAGTATAAGATTAAAGATGAGAGTTTAATTTCAATATCTATCTTTTAAATGTCAGTTTCGTGAAATACTCTTTCATCTTGATACTCAGTTTTTAAGTCTACATATTTTGACGAACCATTTTTAAAATACACTTTATACAC   <  1:1650303/141‑1                                                                                                                                                 TATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATACTCAGTTTTTAAGTCTACATATTTTGACGAACCATTTTTAAAATACACTTTATACACT  <  2:220234/141‑1                                                                                                                                                                                                                                                                                               ATGGTTCGTCAAAATATGTAGACTTAAAAACTGAGTATAAAGATGAAAGAGTATTTAAAGCAACTGACATTAAAAAGGTAGATATTGAACTTAAATTCTAATCTTTAATTTTATAATAAGGCATCTCACAATCGTGGGGTGCCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  USA300TCH1516_ALE/2082783‑2082639 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccttATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATACTCAGTTTTTAAGTCTACATATTTTGACGAACCATTTTTAAAATACACTTTATACACT  >  USA300TCH1516_ALE/2082667‑2082806

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.