BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2082639 =	149 (0.820)	8 (0.050)	8/242	NT	5.5%	intergenic (+280/+44)	aspC/USA300HOU_RS10520	Aspartate aminotransferase/65 kDa membrane protein
*	?	USA300TCH1516_ALE	2082667 =	135 (0.780)	8 (0.050)	8/242	NT	5.5%	intergenic (+308/+16)	aspC/USA300HOU_RS10520	Aspartate aminotransferase/65 kDa membrane protein

Only 100 of 175 total aligned reads displayed.

TCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATACTCAGTTTTTAAGTCTACATATTTTGACGAA  >  USA300TCH1516_ALE/2082499‑2082779

tctctcCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATTACACCTCTACAAATGTaaa                                                                                                                                              >  1:654932/1‑141 (MQ=255)

agtgtataaagtgtattttaaaaatggttcgtcaaaatatgtagacttaaaaactgagtataaagatgaaagagtatttaaagcaactgacattaaaaaggtagatattgaacttaaattctaatctttaattttataata                                                                                                                                              <  2:220234‑M1/1‑1 (MQ=255)

 gtgtataaagtgtattttaaaaatggttcgtcaaaatatgtagacttaaaaactgagtatcaagatgaaagagtatttcacgaaactgacatttaaaagatagatattgaaattaaactctcatctttaatcttatactaa                                                                                                                                             <  1:1650303‑M1/2‑1 (MQ=255)

 gtgtataaagtgtattttaaaaatggttcgtcaaaatatgtagacttaaaaactgagtataaagatgaaagagtatttaaagcaactgacattaaaaaggtagatattgaacttaaattctaatctttaattttataataa                                                                                                                                             <  2:317712‑M1/2‑1 (MQ=255)

 ctctcCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTaaaa                                                                                                                                             <  1:530893/141‑1 (MQ=255)

  tgtataaagtgtattttaaaaatggttcgtcaaaatatgtagacttaaaaactgagtataaagatgaaagagtatttaaagcaactgacattaaaaaggtagatattgaacttaaattctaatctttaattttataatAAg                                                                                                                                            <  1:1317450‑M1/3‑1 (MQ=255)

  tctcCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAg                                                                                                                                            >  4:430891/1‑141 (MQ=255)

  tctcCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAg                                                                                                                                            >  1:247205/1‑141 (MQ=255)

    tcCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGc                                                                                                                                          >  3:691152/1‑141 (MQ=255)

     ataaagtgtattttaaaaatggttcgtcaaaatatgtagacttaaaaactgagtataaagatgaaagagtatttaaagcaactgacattaaaaaggtagatattgaacttaaattctaatctttaattttataatAAGGCa                                                                                                                                         <  3:212651‑M1/6‑1 (MQ=255)

      taaagtgtattttaaaaatggttagtcaacatatgtagacttaacacatgagtataaagatgaaagagtatttaaagcaactgacattaaaaaggtagatattgaacttacatcctcatctttaattttataataaggaat                                                                                                                                        <  2:827005‑M1/7‑4 (MQ=255)

        aaCAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCAccc                                                                                                                                      >  2:1236399/1‑141 (MQ=255)

         aCAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCAcccc                                                                                                                                     <  2:533573/141‑1 (MQ=255)

            aaaTCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCACACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACg                                                                                                                                  <  3:157968/141‑1 (MQ=255)

             aaTCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGa                                                                                                                                 >  2:128399/1‑141 (MQ=255)

             aaTCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGa                                                                                                                                 >  4:41067/1‑141 (MQ=255)

              aTCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGAt                                                                                                                                >  2:239147/1‑141 (MQ=255)

               tCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGAtt                                                                                                                               <  1:1631944/141‑1 (MQ=255)

                 aaaaaaTCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATCGAACCAATTTATATCAATTTTGAAAACTCCCTCCACACATTCAAGAATCACATCTATACCAATGTAAAAGGCACCCCACGATtgt                                                                                                                             >  1:827005/1‑141 (MQ=25)

                 aaaaaaTCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATtgt                                                                                                                             >  4:495466/1‑141 (MQ=255)

                  aaaaaTCGGACAGATGAAAAGTAAAAAACTTTTTCTATCATTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATtgtg                                                                                                                            >  2:1191566/1‑141 (MQ=255)

                  aaaaaTCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATtgtg                                                                                                                            >  2:302809/1‑141 (MQ=255)

                        cGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGc                                                                                                                      >  4:653725/1‑141 (MQ=255)

                           gcAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTTTGCGATGCCtt                                                                                                                   >  4:158117/2‑141 (MQ=255)

                           aCAGATGAAAAGTAAAAAACTTTTTTTTTTTTTTTTATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGTCtt                                                                                                                   >  2:1321920/1‑141 (MQ=255)

                           aCAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCtt                                                                                                                   >  1:445430/1‑141 (MQ=255)

                           aCAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCtt                                                                                                                   >  1:1127384/1‑141 (MQ=255)

                           aCAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCtt                                                                                                                   >  1:566343/1‑141 (MQ=255)

                           aCAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCtt                                                                                                                   <  2:1389412/141‑1 (MQ=255)

                           aCAGATAAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCtt                                                                                                                   <  2:784600/141‑1 (MQ=255)

                             aGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCttat                                                                                                                 >  2:160162/1‑141 (MQ=255)

                                tGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTtattat                                                                                                              <  1:200294/141‑1 (MQ=255)

                                  aaaaGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATaa                                                                                                            >  2:1548340/1‑141 (MQ=255)

                                   aaaGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATaaa                                                                                                           >  1:157820/1‑141 (MQ=255)

                                       tAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTa                                                                                                       <  2:199830/141‑1 (MQ=255)

                                        aaaaaaCTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTaa                                                                                                      >  1:734163/1‑141 (MQ=255)

                                         aaaaaCTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTaaa                                                                                                     >  2:505622/1‑141 (MQ=255)

                                            aaCTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGAt                                                                                                  >  1:344076/1‑141 (MQ=255)

                                             aCTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGAtt                                                                                                 <  3:488050/141‑1 (MQ=255)

                                                    cTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGa                                                                                              >  2:24567/1‑137 (MQ=255)

                                                    cTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGa                                                                                              <  1:24567/137‑1 (MQ=255)

                                                     tATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTa                                                                                         >  1:256133/1‑141 (MQ=255)

                                                        ttttttgATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACAATCAAGCATCACATCTCTACAAATGTAATAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGt                                                                                      >  4:695623/7‑141 (MQ=255)

                                                        cAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGt                                                                                      >  4:177645/1‑141 (MQ=255)

                                                           tCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCa                                                                                   >  2:379935/1‑141 (MQ=255)

                                                                 ttattaTAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCt                                                                             <  1:1244646/141‑1 (MQ=255)

                                                                    ttatAGNACCAATTTATNNAACTTTTGGCAAATNACTNCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTAcc                                                                          >  3:664028/1‑141 (MQ=255)

                                                                    ttatAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTAcc                                                                          >  1:896652/1‑141 (MQ=255)

                                                                      ataGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCtt                                                                        >  1:33919/1‑141 (MQ=255)

                                                                      ataGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCtt                                                                        >  3:329045/1‑141 (MQ=255)

                                                                       taGAACCAATTTATATAACTGTTGGCAGATCTTTTCAAGCATTTAAGCATAACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGGCTTATTATAAAATTAAAGATTAGAATTTATGTTTAATATCTACCttt                                                                       >  2:264635/1‑141 (MQ=255)

                                                                         gAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCttttt                                                                     <  2:4935/141‑1 (MQ=255)

                                                                            tttaaagcaactgacattaaaaaggtagatattgaacttaaattctaatctttaattttataatAAGGCACCCCACGAt                                                                                                                                >  1:968115‑M1/65‑79 (MQ=255)

                                                                            tttaaagcaactgacattaaaaaggtagatattgaacttaaattctaatctttaattttataatAAGGCACCCCACGAt                                                                                                                                <  2:968115‑M1/15‑1 (MQ=255)

                                                                             cAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATg                                                                 <  3:64330/141‑1 (MQ=255)

                                                                               aTTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTc                                                               >  1:87233/1‑141 (MQ=255)

                                                                               aTTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTc                                                               >  2:184657/1‑141 (MQ=255)

                                                                                tttATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTGTAATGTCa                                                              >  1:654558/1‑141 (MQ=255)

                                                                                tttATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGACACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCa                                                              >  4:317191/1‑141 (MQ=255)

                                                                                 ttATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTTGAATTTAAGTTCAATATCTACCTTTTTAATGTCAg                                                             <  1:1373604/141‑1 (MQ=255)

                                                                                 ttATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAg                                                             <  2:175092/141‑1 (MQ=255)

                                                                                  tatataACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGt                                                            <  4:226385/141‑1 (MQ=255)

                                                                                   atataACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTCTTTAATGTCAGtt                                                           >  2:742693/1‑141 (MQ=255)

                                                                                         cTTTTCGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTa                                                     <  1:379605/141‑1 (MQ=255)

                                                                                          ttttGGCAAATCACTTCAAACAGTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTaa                                                    <  1:1515127/141‑1 (MQ=255)

                                                                                          ttttCGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTaa                                                    <  2:603491/141‑1 (MQ=255)

                                                                                           tttGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGTCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTaaa                                                   <  3:594017/141‑1 (MQ=255)

                                                                                           tttGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTaaa                                                   <  2:644139/141‑1 (MQ=255)

                                                                                            ttaaaaaggtagatattgaacttaaattctaatctttaattttataatAAGGCATCTCACAATCGTGGGGTGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAAt                                                  <  1:447976‑M1/93‑1 (MQ=255)

                                                                                              ggCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATAc                                                >  2:1157635/1‑141 (MQ=255)

                                                                                                cAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATActc                                              >  1:943965/1‑141 (MQ=255)

                                                                                                    tCACTTCAAACATTCAAGCATTCCATCTCTACAAATTTAAAATGCACCTCACGATTGTGATTTGCCTTATTATAATATTAAATATTAGAATTTAAGTTTAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTc                                          <  4:586957/141‑1 (MQ=255)

                                                                                                       cTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATc                                       <  2:773910/141‑1 (MQ=255)

                                                                                                        ttCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCt                                      <  1:141764/141‑1 (MQ=255)

                                                                                                         tCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCtt                                     >  2:1432396/1‑141 (MQ=255)

                                                                                                           aaaCATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTta                                   <  2:668879/141‑1 (MQ=255)

                                                                                                             aCATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTtata                                 <  4:261778/141‑1 (MQ=255)

                                                                                                              cATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATAc                                <  1:289725/141‑1 (MQ=255)

                                                                                                              cATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATAc                                <  1:389488/141‑1 (MQ=255)

                                                                                                                ttCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATACTc                              <  2:475745/141‑1 (MQ=255)

                                                                                                                 tCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATACTCa                             >  1:1016067/1‑141 (MQ=255)

                                                                                                                 tCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATACTCa                             >  1:1324694/1‑141 (MQ=255)

                                                                                                                  cAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATACTCAg                            <  4:635854/141‑1 (MQ=255)

                                                                                                                   aaGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATACTCAGt                           >  2:999068/1‑141 (MQ=255)

                                                                                                                   aaGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATACTCAGt                           <  2:1460957/141‑1 (MQ=255)

                                                                                                                      cATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATACTCAGtttt                        >  2:191743/1‑141 (MQ=255)

                                                                                                                          acaTCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATACTCAGTTTTTAAg                    >  4:18533/1‑141 (MQ=255)

                                                                                                                           caTCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATACTCAGTTTTTAAGt                   >  2:1632192/1‑141 (MQ=255)

                                                                                                                            aTCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATACTCAGTTTTTAAGTc                  <  2:1215337/141‑1 (MQ=255)

                                                                                                                            aTCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATACTCAGTTTTTAAGTc                  >  3:494344/1‑141 (MQ=255)

                                                                                                                            aTCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATACTCAGTTTTTAAGTc                  <  1:1471452/141‑1 (MQ=255)

                                                                                                                             tctcTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAAGTTAAGTTCAATATATACCTTTTTAATGCCAGTTTCTTAAAATACTATTTTATCTTTATATTCAGTTTTTAAGTCt                 >  4:116068/1‑141 (MQ=255)

                                                                                                                              ctctACAAATGTAAAAGGCACCCCACGATTGTGAGAAGCCTTATTATAAAAATAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATACTCAGTTTTTAAGTCTa                <  1:1241917/141‑1 (MQ=255)

                                                                                                                                  aCAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATACTCAGTTTTTAAGTCTACata            <  2:1185788/141‑1 (MQ=255)

                                                                                                                                  aCAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATACTCAGTTTTTAAGTCTACata            >  1:82862/1‑141 (MQ=255)

                                                                                                                                    aaaTGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATACTCAGTTTTTAAGTCTACATAtt          >  1:775225/1‑141 (MQ=255)

                                                                                                                                     ttataatAAGGCATCTCACAATCGTGGGGTGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATACTCAGTTTTTAAGTCTACATAttt         <  1:1002069‑M1/134‑1 (MQ=255)

                                                                                                                                        gTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATACTCAGTTTTTAAGTCTACATATTTTGa      >  3:140884/1‑141 (MQ=255)

                                                                                                                                          aaaaGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTGCATCTTTATACTCAGTTTTTAAGTCTACATATTTTGACg    >  1:1224982/1‑141 (MQ=255)

                                                                                                                                            AAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATACTCAGTTTTTAAGTCTACATATTTTGACGaa  <  2:1081811‑M1/141‑1 (MQ=255)

TCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATACTCAGTTTTTAAGTCTACATATTTTGACGAA  >  USA300TCH1516_ALE/2082499‑2082779

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.