| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2726829 | 220 (1.200) | 3 (0.020) | 3/244 | NT | 1.5% | intergenic (‑256/+86) | USA300HOU_RS14030/USA300HOU_RS14035 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | = 2726876 | 189 (1.080) | intergenic (‑303/+39) | USA300HOU_RS14030/USA300HOU_RS14035 | hypothetical protein/hypothetical protein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ATTGTATCAATAAATATGTATCATTCCTAGAATTTTATTGAACAAAAAGTTATAAAATCACTTTTATTGTAACTCAACCTTGTTTTACATTACAGAAATTAACAATAGCGATTAAAATTTTATTTTCCAACAATAAAAACGCACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2726685‑2726829‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcacaGATATTTTTACAATGAGAAGCGATACAGCTGCCTCAATAAAAATATTTGTGCGTTTTTATTGTTGGAAAATAAAATTTTAATCGCTATTGTTAATTTCTGTAATGTAAAACAAGGTTGAGTTACAATAAAAGTGATTTTA < USA300TCH1516_ALE/2726876‑2726737 ATTGTATCAATAAATATGTATCATTCCTAGAATTTTATTGAACAAAAAGTTATAAAATCACTTTTATTGTAACTCAACCTTGTTTTACATTACAGAAATTAACAATAGCGATTAAAATTTTATTTTCCAACAATAAAAACG > 1:1208768/1‑141ATTGTATCAATAAATATGTATCATTCCTAGAATTTTATTGAACAAAAAGTTATAAAATCACTTTTATTGTAACTCAACCTTGTTTTACATTACAGAAATTAACAATAGCGATTAAAATTTTATTTTCCAACAATAAAAACG < 4:293777/141‑1ATTGTATCAATAAATATGTATCATTCCTAGAATTTTATTGAACAAAAAGTTATAAAATCACTTTTATTGTAACTCAACCTTGTTTTACATTACAGAAATTAACAATAGCGATTAAAATTTTATTTTCCAACAATAAAAACG > 1:440211/1‑141 TGTATCAATAAATATGTATCATTCCTAGAATTTTATTGAACAAAAAGTTATAAAATCACTTTTATTGTGACTCAACCTTGTTTTACATTACAGAAATTAACAATAGCGATCAAAATTTTATTTTCCAACAATAAAAACGCA > 2:292906/1‑141 TGTATCAATAAATATGTATCATTCCTAGAATTTTATTGAACAAAAAGTTATAAAATCACTTTTATTGTAACTCAACCTTGTTTTACATTACAGAAATTAACAATAGCGATTAAAATTTTATTTTCCAACAATAAAAACGCA < 3:202703/141‑1 TGTATCAATAAATATGTATCATTCCTAGAATTTTATTGAACAAAAAGTTATAAAATCACTTTTATTGTAACTCAACCTTGTTTTACATTACAGAAATTAACAATAGCGATTAAAATTTTATTTTCCAACAATAAAAACGCA > 1:769011/1‑141 GTATCAATAAATATGTATCATTCCTAGAATTTTATTGAACAAAAAGTTATAAAATCACTTTTATTGTAACTCAACCTTGTTTTACATTACAGAAATTAACAATAGCGATTAACATTTTATTTTCCAACAATAAAAACGCAC > 3:79536/1‑141 GTATCAATAAATATGTATCATTCCTAGAATTTTATTGAACAAAAAGTTATAAAATCACTTTTATTGTAACTCAACCTTGTTTTACATTACAGAAATTAACAATAGCGATTAAAATTTTATTTTCCAACAATAAAAACGCAC > 2:563684/1‑141 GTATCAATAAATATGTATCATTCCTAGAATTTTATTGAACAAAAAGTTATAAAATCACTTTTATTGTAACTCAACCTTGTTTTACATTACAGAAATTAACAATAGCGATTAAAATTTTATTTTCCAACAATAAAAACGCAC > 2:536776/1‑141 GTATCAATAAATATGTATCATTCCTAGAATTTTATTGAACAAAAAGTTATAAAATCACTTTTATTGTAACTCAACCTTGTTTTACATTACAGAAATTAACAATAGCGATTAAAATTTTATTTTCCAACAATAAAAACGCAC < 1:1301109/141‑1 GTATCAATAAATATGTATCATTCCTAGAATTTTATTGAACAAAAAGTTATAAAATAACTTTTATTGTAACTCAACTTTGTTTTACATTAGAGAAATTAATAATAGCGATTAAAATTTTATTTTCTAACAATAAAAAAGCAa > 3:616780/1‑140 TATCAATAAATATGTATCATTCCTAGAATTTTATTGAACAAAAAGTTATAAAATCACTTTTATTGTAACTCAACCTTGTTTTACATTACAGAAATTAACAATAGCGATTAAAATTTTATTTTCCAACAATAAAAACGCACA < 1:1651280/141‑1 TATCAATAAATATGTATCATTCCTAGAATTTTATTGAACAAAAAGTTATAAAATCACTTTTATTGTAACTCAACCTTGTTTTACATTACAGAAATTAACAATAGCGATTAAAATTTTATTTTCCAACAATAAAAACGCACA < 1:1328182/141‑1 TATCAATAAATATGTATCATTCCTAGAATTTTATTGAACAAAAAGTTATAAAATCACTTTTATTGTAACTCAACCTTGTTTTACATTACAGAAATTAACAATAGCGATTAAAATTTTATTTTCCAACAATAAAAACGCACA > 2:1465690/1‑141 TATAAAATCACTTTTATTGTAACTCAACCTTGTTTTACATTACAGAAATTAACAATAGCGATTAAAATTTTATTTTCCAACAATAAAAACGCACAGATATTTTTACAATGAGAAGCGATACAGCTGCCTCAATAAAAATAT < 2:518252/141‑1 ACTTTTATTGTAACTCAACCTTGTTTTACATTACAGAAATTAACAATAGCGATTAAAATTTTATTTTCCAACAATAAAAACGCACAGATATTTTTACAATGAGAAGCGATACAGCTGCCTCAATAAAAATATTTGTGCGTT < 1:610461/141‑1 atTCAACCTTGTTTTACATTACAGAAATTAACAATAGCAGTTAAAATTTTTTTTTCCAACAATAAAAACGCACAGATATTTTTACAATGAGAAGCGATACAGCTGCCTCAATAAAAATATTTGTGCGTTTTTATTGTTGGA < 1:1222771/139‑1 GCACAGATATTTTTACAATGAGAAGCGATACAGCTGCCTCAATAAAAATATTTGTGCGTTTTTATTGTTGGAAAATAAAATTTTAATCGCTATTGTTAATTTCTGTAATGTAAAACAAGGTTGAGTTACAATAAAAGTGAT > 2:1208768/1‑141 GCACAGATATTTTTACAATGAGAAGCGATACAGCTGCCTCAATAAAAATATTTGTGCGTTTTTATTGTTGGAAAATAAAATTTTAATCGCTATTGTTAATTTCTGTAATGTAAAACAAGGTTGAGTTACAATAAAAGTGAT > 2:344633/1‑141 ACAGATATTTTTACAATGAGAAGCGATACAGCTGCCTCAATAAAAATATTTGTGCGTTTTTATTGTTGGAAAATAAAATTTTAATCGCTATTGTTAATTTCTGTAATGTAAAACAAGGTTGAGTTACAATAAAAGTGATTT < 2:1545952/141‑1 ACAGATATTTTTACAATGAGAAGCGATACAGCTGCCTCAATAAAAATATTTGTGCGTTTTTATTGTTGGAAAATAAAATTTTAATCGCTATTGTTAATTTCTGTAATGTAAAACAAGGTTGAGTTACAATAAAAGTGATTT < 1:819958/141‑1 CAGATATTTTTACAATGAGAAGCGATACAGCTGCCTCAATAAAAATATTTGTGCGTTTTTATTGTTGGAAAATAAAATTTTAATCGCTATTGTTAATTTCTGTAATGTAAAACAAGGTTGAGTTACAATAAAAGTGATTTT < 1:788324/141‑1 CAGATATTTTTACAATGAGAAGCGATACAGCTGCCTCAATAAAAATATTTGTGCGTTTTTATTGTTGGAAAATAAAATTTTAATCGCTATTGTTAATTTCTGTAATGTAAAACAAGGTTGAGTTACAATAAAAGTGATTTT > 1:165036/1‑141 CAGATATTTTTACAATGAGAAGCGATACAGCTGCCTCAATAAAAATATTTGTGCGTTTTTATTGTTGGAAAATAAAATTTTAATCGCTATTGTTAATTTCTGTAATGTAAAACAAGGTTGAGTTACAATAAAAGTGATTTT < 1:1279233/141‑1 AGATATTTTTACAATGAGAAGCGATACAGCTGCCTCAATAAAAATATTTGTGCGTTTTTATTGTTGGAAAATAAAATTTTAATCGCTATTGTTAATTTCTGTAATGTAAAACAAGGTTGAGTTACAATAAAAGTGATTTTA > 1:503602/1‑141 AGATATTTTTACAATGAGAAGCGATACAGCTGCCTCAATAAAAATATTTGTGCGTTTTTATTGTTGGAAAATAAAATTTTAATCGCTATTGTTAATTTCTGTAATGTAAAACAAGGTTGAGTTACAATAAAAGTGATTTTA < 1:401444/141‑1 AGATATTTTTACAATGAGAAGCGATACAGCTGCCTCAATAAAAATATTTGTGCGTTTTTATTGTTGGAAAATAAAATTTTAATCGCTATTGTTAATTTCTGTAATGTAAAACAAGGTTGAGTTACAATAAAAGTGATTTTA > 3:452234/1‑141 AGATATTTTTACAATGAGAAGCGATACAGCTGCCTCAATAAAAATATTTGTGCGTTTTTATTGTTGGAAAATAAAATTTTAATCGCTATTGTTAATTTCTGTAATGTAAAACAAGGTTGAGTTACAATAAAAGTGATTTTA < 1:1367105/141‑1 AGATATTTTTACAATGAGAAGCGATACAGCTGCCTCAATAAAAATATTTGTGCGTTTTTATTGTTGGAAAATAAAATTTTAATCGCTATTGTTAATGGCTGTAATGTAAAACAAGGTTGAGTTACAATAAAAGTGATTTTA < 2:164087/141‑1 ATTGTATCAATAAATATGTATCATTCCTAGAATTTTATTGAACAAAAAGTTATAAAATCACTTTTATTGTAACTCAACCTTGTTTTACATTACAGAAATTAACAATAGCGATTAAAATTTTATTTTCCAACAATAAAAACGCACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2726685‑2726829‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcacaGATATTTTTACAATGAGAAGCGATACAGCTGCCTCAATAAAAATATTTGTGCGTTTTTATTGTTGGAAAATAAAATTTTAATCGCTATTGTTAATTTCTGTAATGTAAAACAAGGTTGAGTTACAATAAAAGTGATTTTA < USA300TCH1516_ALE/2726876‑2726737 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |