| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2760876 | 151 (0.830) | 3 (0.020) | 3/238 | NT | 1.9% | coding (123/1371 nt) | citN | Citrate transporter |
| ? | USA300TCH1516_ALE | = 2760923 | 166 (0.970) | coding (76/1371 nt) | citN | Citrate transporter | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GACAAGCGGCTTGAATAAACCACTATCGTTCATGATGCCAAAGAAAATAATGGCAAAGATAAACATAATAACAACGTTGATGACTTGATCTAACCCTTTAGCAAAAAATCCAACCAAATCTGTCACACTATATCCTAAAATCATTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2760729‑2760876‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcattgccAAAAAGATAAATCCAGTTGTAGGTATGACAATCATACCTTGCTTAGGGGCAATGATTTTAGGATATAGTGTGACAGATTTGGTTGGATTTTTTGCTAAAGGGTTAGATCAAGTCATCAACGTTGTTATTATGTTTAT < USA300TCH1516_ALE/2760923‑2760787 GACAAGCGGCTTGAATAAACCACTATCGTTCATGATGCCAAAGAAAATAATGGCAAAGATAAACATAATAACAACGTTGATGACTTGATCTAACCCTTTAGCAAAAAATCCAACCAAATCTGTCACACTATATCCTAAAAT < 3:84241/141‑1 CAAGCGGCTTGAATAAACCACTATCGTTCATGATGCCAAAGAAAATAATGGCAAAGATAAACATAATAACAACGTTGATGACTTGATCTAACCCTTTAGCAAAAAATCCAACCAAATCTGTCACACTATATCCTAAAATCA > 3:139071/1‑141 AAGCGGCTTGAATAAACCACTATCGTTCATGATGCCAAAGAAAATAATGGCAAAGATAAACATAATAACAACGTTGATGACTTGATCTAACCCTTTAGCAAAAAATCCAACCAAATCTGTCACACTATATCCTAAAATCAT < 1:1036753/141‑1 AAGCGGCTTGAATAAACCACTATCGTTCATGATGCCAAAGAAAATAATGGCAAAGATAAACATAATAACAACGTTGATGACTTGATCTAACCCTTTAGCAAAAAATCCAACCAAATCTGTCACACTATATCCTAAAATCAT < 2:1419142/141‑1 AAGCGGCTTGAATAAACCACTATCGTTCATGATGCCAAAGAAAATAATGGCAAAGATAAACATAATAACAACGTTGATGACTTGATCTAACCCTTTAAAAAAAAATCCACCAAAATCTGTCGCACTATATCCTAAAAGCAT < 2:652371/141‑1 CGGCTTGAATAAACCACTATCGTTCATGATGCCAAAGAAAATAATGGCAAAGATAAACATAATAACAACGTTGATGACTTGATCTAACCCTTTAGCAAAAAATCCAACCAAATCTGTCACACTATATCCTAAAATCATTGC > 1:1357323/1‑141 AGATAAACATAATAACAACGTTGATGACTTGATCTAACCCTTTAGCAAAAAATCCAACCAAATCTGTCACACTATATCCTAAAATCATTGCCAAAAAGATAAATCCAGTTGTAGGTATGACAATCATACCTTGCTTAGGGG < 2:1201011/141‑1 ATAAACATAATAACAACGTTGATGACTTGATCTAACCCTTTAGCAAAAAATCCAACCAAATCTGTCACACTATATCCTAAAATCATTGCCAAAAAGATAAATCCAGTTGTAGGTATGACAATCATACCTTGCTCAGGGGCA < 3:625689/141‑1 TAAACATAATAACAACGTTGATGACTTGATCTAACCCTTTAGCAAAAAATCCAACCAAATCTGTCACACTATATCCTAAAATCATTGCCAAAAAGATAAATCCAGTTGTAGGTATGACAATCATACCTTGCTTAGGGGCAA < 4:38648/141‑1 TCATTGCCAAAAAGATAAATCCAGTTGTAGGTATGACAATCATACCTTGCTTAGGGGCAATGATTTTAGGATATAGTGTGACAGATTTGGTTGGATTTTTTGCTAAAGGGTTAGATCAAGTCATCAACGTTGTTATTATGT < 2:1327427/141‑1 CATTGCCAAAAAGATAAATCCAGTTGTAGGTATGACAATCATACCTTGCTTAGGGGCAATGATTTTAGGATATAGTGTGACAGATTTGGTTGGATTTTTTGCTAAAGGGTTAGATCAAGTCATCAACGTTGTTATTATGTT < 2:939412/141‑1 CATTGCCAAAAAGATAAATCCAGTTGTAGGTATGACAATCATACCTTGCTTAGGAGCAATGATTTTAGGATATAGTGTGACAGATTTGGTTGGATTTTTTGCTAAAGGGTTAGATCAAGTCATCAACGTTGTTATTATGTT < 2:1183250/141‑1 ATTGCCAAAAAGATAAATCCAGTTGTAGGTATGACAATCATACCTTGCTTAGGGGCAATGATTTTAGGATATACTGTGACAGATTTGGTTGGATTTTTAGCTAAACGGTTAGATCAAGTCATCAACGTTGTTATTATGTTT < 1:1424585/141‑1 TTGCCAAAAAGATAAATCCAGTTGTAGGTATGACAATCATACCTTGCTTAGGGGCAATGATTTTAGGATATAGTGTGACAGATTTGGTTGGATTTTTTGCTAAAGGGTTAGATCAAGTCATCAACGTTGTTATTATGTTTA > 1:464868/1‑141 TTGCCAAAAAGATAAATCCAGTTGTAGGTATGACAATCATACCTTGCTTAGGGGCAATGATTTTAGGATATAGTGTGACAGATTTGGTTGGATTTTTTGCTAAAGGGTTAGATCAAGTCATCAACGTTGTTATTATGTTTA > 1:1050350/1‑141 TTGCCAAAAAGATAAATCCAGTTGTAGGTATGACAATCATACCTTGCTTAGGGGCAATGAATTTAGGATATAGTGTGACAGATTTGGTTGGATTTTTTGCTAAAGGGTTAGATCAAGTCATCAACGTTGTTATTATGTTTA > 1:891400/1‑141 TGCCAAAAAGATAAATCCAGTTGTAGGTATGACAATCATACCTTGCTTAGGGGCAATGATTTTAGGATATAGTGTGACAGATTTGGTTGGATTTTTTGCTAAAGGGTTAGATCAAGTCATCAACGTTGTTATTATGTTTAT > 2:987044/1‑141 GACAAGCGGCTTGAATAAACCACTATCGTTCATGATGCCAAAGAAAATAATGGCAAAGATAAACATAATAACAACGTTGATGACTTGATCTAACCCTTTAGCAAAAAATCCAACCAAATCTGTCACACTATATCCTAAAATCATTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2760729‑2760876‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcattgccAAAAAGATAAATCCAGTTGTAGGTATGACAATCATACCTTGCTTAGGGGCAATGATTTTAGGATATAGTGTGACAGATTTGGTTGGATTTTTTGCTAAAGGGTTAGATCAAGTCATCAACGTTGTTATTATGTTTAT < USA300TCH1516_ALE/2760923‑2760787 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |