BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2760876	151 (0.830)	3 (0.020)	3/238	NT	1.9%	coding (123/1371 nt)	citN	Citrate transporter
*	?	USA300TCH1516_ALE	= 2760923	166 (0.970)	3 (0.020)	3/238	NT	1.9%	coding (76/1371 nt)	citN	Citrate transporter
Rejected: Frequency below/above cutoff threshold.

Only 100 of 190 total aligned reads displayed.

ATAAACATAATAACAACGTTGATGACTTGATCTAACCCTTTAGCAAAAAATCCAACCAAATCTGTCACACTATATCCTAAAATCATTGCCCCTAAGCAAGGTATGATTGTCATACCTACAACTGGATTTATCTTTTTGGCAATGAGTAAACCTACAATTGAAATAATAATAATGAGCCCCATTACTGTTAACCA‑CATATTATCACTATTCATATTATTTTCTCCCTCCACTTTTAATACAATTTACATAATCCCCCTCTTTAACTTAAATATTAT  >  USA300TCH1516_ALE/2760787‑2761061

aTAAACATAATAACAACGTTGATGACTTGATCTAACCCTTTAGCAAAAAATCCAACCAAATCTGTCACACTATATCCTAAAATCATTGCCCCTAAGCAAGGTATGATTGTCATACCTACAACTGGATTTATCTTTTTggca                                                                                                                                         >  2:987044‑M2/1‑137 (MQ=255)

  aaaCATAATAACAACGTTGATGACTTGATCTAACCGTTTAGCTAAAAATCCAACCAAATCTGTCACAGTATATCCTAAAATCATTGCCCCTAAGCAAGGTATGATTGTCATACCTACAACTGGATTTATCTTTTTggcaat                                                                                                                                       <  1:1424585‑M2/141‑7 (MQ=255)

    aCATAATAACAACGTTGATGACTTGATCTAACCCTTTAGCAAAAAATCCAACCAAATCTGTCACACTATATCCTAAAATCATTGCCCCTAAGCAAGGTATGATTGTCATACCTACAACTGGATTTATCTTTTTggcaatga                                                                                                                                     <  2:1327427‑M2/141‑9 (MQ=255)

     cATAATAACAACGTTGATGACTTGATCTAACCCTTTAGCAAAAAATCCAACCAAATCTGTCACACTATATCCTAAAATCATTGCCCCTAAGCAAGGTATGATTGTCATACCTACAACTGGATTTATCTTTTTGGCAATGAg                                                                                                                                    >  2:165838/1‑141 (MQ=255)

     cATAATAACAACGTTGATGACTTGATCTAACCCTTTAGCAAAAAATCCAACCAAATCTGTCACACTATATCCTAAAATCATTGCCCCTAAGCAAGGTATGATTGTCATACCTACAACTGGATTTATCTTTTTGGCAATGAg                                                                                                                                    >  1:524973/1‑141 (MQ=255)

     cATAATAACAACGTTGATGACTTGATCTAACCCTTTAGCAAAAAATCCAACCAAATCTGTCACACTATATCCTAAAATCATTGCCCCTAAGCAAGGTATGATTGTCATACCTACAACTGGATTTATCTTTTTGGCAATGAg                                                                                                                                    >  3:328334/1‑141 (MQ=255)

     cATAATAACAACGTTGATGACTTGATCTAACCCTTTAGCAAAAAATCCAACCAAATCTGTCACACTATATCCTAAAATCATTGCCCCTAAGCAAGGTATGATTGTCATACCTACAACTGGATTTATCTTTTTGGCAATGAg                                                                                                                                    >  1:647913/1‑141 (MQ=255)

      ataataACTACGTTGATGACTTGATCTAACCCTTTAGCAAAAAATCCAACCAAATCTGTCACACTATATCCTAAAATCATTGCCCCTAAGCAAGGTATGATTGTCATACCTACAACTGGATTTATCTTTTTGGCAATGAGt                                                                                                                                   <  4:569847/141‑1 (MQ=255)

       taataaCAACGTTGATGACTTGATCTAACCCTTTAGCAAAAAATCCAACCAAATCTGTCACACTATATCCTAAACTCATTGCCCCTAAGCAAGGTATGATTGTCATACCTACAACTGGATTTATCTTTTTGGCAATGAGTa                                                                                                                                  <  3:245243/141‑1 (MQ=255)

       taataaCAACGTTGATGACTTGATCTAACCCTTTAGCAAAAAATCCAACCAAATCTGTCACACTATATCCTAAAATCATTGCCCCTAAGCAAGGTATGATTGTCATACCTACAACTGGATTTATCTTTTTGGCAATGAGTa                                                                                                                                  <  2:437159/141‑1 (MQ=255)

        aataaCAACGTTGATGACTTGATCTAACCCTTTAGCAAAAAATCCAACCAAATCTGTCACACTATATCCTAAAATCATTGCCCCTAAGCAAGGTATAATTGTCATACCTACAACTGGATTTATCTTTTTGGCAATGAGTaa                                                                                                                                 >  1:1346093/1‑141 (MQ=255)

         ataaCAACGTTGATGACTTGATCTAACCCTTTAGCAAAAAATCCAACCAAATCTGTCACACTATATCCTAAAATCATTGCCCCTAAGCAAGGTATGATTGTCATACCTACAACTGGATTTATCTTTTTGGCAATGAGTaaa                                                                                                                                <  2:1357323/141‑1 (MQ=255)

          taaCAACGTTGATGACTTGATCTAACCCTTTAGCAAAAAATCCAACCAAATCTGTCACACTATATCCTAAAATCATTGCCCCTAAGCAAGGTATGATTGTCATACCTACAACTGGATTTATCTTTTTGGCAATGAGTAAAc                                                                                                                               <  1:877734/141‑1 (MQ=255)

           aacaacGTTGATGACTTGATCTAACCCTTTAGCAAAAAATCCAACCAAATCTGTCACACTATATCCTAAAATCATTGCCCCTAAGCAAGGTATGATTGTCATACCTACAACTGGATTTATCTTTTTGGCAATGAGTAAAcc                                                                                                                              <  1:1271467/141‑1 (MQ=255)

            acaacGTTGATGACTTGATCTAACCCTTTAGCAAAAACTCCAACCAAACCTGCCACACTATCTCCTAAAATCATTGCCCCTAAGCAAGGTATGATTGTCATACCTACAACTGGATTTATCTTTTTGGCAATGAGTAAACCt                                                                                                                             <  1:575420/141‑1 (MQ=255)

               acGTTGATGACTTGATCTAACCCTTTAGCAAAAAATCCAACCAAATCTGTCACACTATATCCTAAAATCATTGCCCCTAAGCAAGGTATGATTGTCATACCTACAACTGGATTTATCTTTTTGGCAATGAGTAAACCTACa                                                                                                                          >  3:55008/1‑141 (MQ=255)

               acGTTGATGACTTGATCTAACCCTTTAGCAAAAAATCCAACCAAATCTGTCACACTATATCCTAAAATCATTGCCCCTAAGCAAGGTATGATTGTCATACCTACAACTGGATTTATCTTTTTGGCAATGAGTAAACCTACa                                                                                                                          >  3:109569/1‑141 (MQ=255)

               acGTTGATGACTTGATCTAACCCTTTAGCAAAAAATCCAACCAAATCTGTCACACTATATCCTAAAATCATTGCCCCTAAGCAAGGTATGATTGTCATACCTACAACTGGATTTATCTTTTTGGCAATGAGTAAACCTACa                                                                                                                          >  2:685541/1‑141 (MQ=255)

                cGTTGATGACTTGATCTAACCCTTTAGCAAAAAATCCAACCAAATCTGTCACACTATATCCTAAAATCATTGCCCCTAAGCAAGGTATGATTGTCATACCTACAACTGGATTTATCTTTTTGGCAATGAGTAAACCTACaa                                                                                                                         <  1:900432/141‑1 (MQ=255)

                cGTTGATGACTTGATCTAACCCTTTAGCAAAAAATCCAACCAAATCTGTCACACTATATCCTAAAATCATTGCCCCTAAGCAAGGTATGATTGTCATACCTACAACTGGATTTATCTTTTTGGCAATGAGTAAACCTACaa                                                                                                                         <  1:1007362/141‑1 (MQ=255)

                 gTTGATGACTTGATCTAACCCTTTAGCAAAAAATCCAACCAAATCTGTCACACTATATCCTAAAATCATTGCCCCTAAGCAAGGTATGATTGTCATACCTACAACTGGATTTATCTTTTTGGCAATGAGTAAACCTACAAt                                                                                                                        >  3:550564/1‑141 (MQ=255)

                 gTTGATGACTTGATCTAACCCTTTAGCAAAAAATCCAACCAAATCTGTCACACTATATCCTAAAATCATTGCCCCTAAGCAAGGTATGATTGTCATACCTACAACTGGATTTATCTTTTTGGCAATGAGTAAACCTACAAt                                                                                                                        <  3:423188/141‑1 (MQ=255)

                 gTTGATGACTTGATCTAACCCTTTAGCAAAAAATCCAACCAAATCTGTCACACTATATCCTAAAATCATTGCCCCTAAGCAAGGTATGATTGTCATACCTACAACTGGATTTATCTTTTTGGCAATGAGTAAACCTACAAt                                                                                                                        >  4:8380/1‑141 (MQ=255)

                 gTTGATGACTTGATCTAACCCTTTAGCAAAAAATCCAACCAAATCTGTCACACTATATCCTAAAATCATTGCCCCTAAGCAAGGTATGATTGTCATACCTACAACTGGATTTATCTTTTTGGCAATGAGTAAACCTACAAt                                                                                                                        <  1:1498895/141‑1 (MQ=255)

                 gTTGATGACTTGATCTAACCCTTTAGCAAAAAATCCAACCAAATCTGTCACACTATATCCTAAAATCATTGCCCCTAAGCAAGGTATGATTGTCATACCTACAACTGGATTTATCTTTTTGGCAATGAGTAAACCTACAAt                                                                                                                        <  3:251249/141‑1 (MQ=255)

                  ttGATGACTTGATCTAAGCCTTTATCAAAAAATCCAACCAAATCTTTCCCACTATATCCTAAAATCATTGCCCCTTAGCAAGGTATGATTGTCATACCTACAACTGGATTTATCTTTTTGGCAATGAGTAAACCTACAAtt                                                                                                                       <  4:625891/141‑1 (MQ=255)

                    gatgaCTTGATCTAACCCTTTAGCAAAAAATCCAACCAAATCTGTCACACTATATCCTAAAATCATTGCCCCTAAGCAAGGTATGATTGTCATACCTACAACTGGATTTATCTTTTTGGCAATGAGTAAACCTACAATTGa                                                                                                                     >  2:193490/1‑141 (MQ=255)

                    gatgaCTTGATCTAACCCTTTAGCAAAAAATCCAACCAAATCTGTCACACTATATCCTAAAATCATTGCCCCTAAGCAAGGTATGATTGTCATACCTACAACTGGATTTATCTTTTTGGCAATGAGTAAACCTACAATTGa                                                                                                                     <  4:139071/141‑1 (MQ=255)

                     atgaCTTGATCTAACCCTTTAGCAAAAAATCCAACCAAATCTGTCACACTATATCCTAAAATCATTGCCCCTAAGCAAGGTATGATTGTCATACCTACAACTGGATTTATCTTTTTGGCAATGAGTAAACCTACAATTGaa                                                                                                                    <  2:666349/141‑1 (MQ=255)

                     atgaCTTGATCTAACCCTTTAGCAAAAAATCCAACCAAATCTGTCACACTATATCCTAAAATCATTGCCCCTAAGCAAGGTATGATTGTCATACCTACAACTGGATTTATCTTTTTGGCAATGAGTAAACCTACAATTGaa                                                                                                                    >  2:1223178/1‑141 (MQ=255)

                      tgaCTTGATCTAACCCTTTAGCAAAAAATCCAACCAAATCTGTCACACTATATCCTAAAATCATTGCCCCTAAGCAAGGTATGATTGTCATACCTACAACTGGATTTATCTTTTTGGCAATGAGTAAACCTACAAt                                                                                                                        >  1:931153/1‑136 (MQ=255)

                      tgaCTTGATCTAACCCTTTAGCAAAAAATCCAACCAAATCTGTCACACTATATCCTAAAATCATTGCCCCTAAGCAAGGTATGATTGTCATACCTACAACTGGATTTATCTTTTTGGCAATGAGTAAACCTACAAt                                                                                                                        <  2:931153/136‑1 (MQ=255)

                      tgaCTTGATCTAACCCTTTAGCAAAAAATCCAACCAAATCTGTCACACTATATCCTAAAATCATTGCCCCTAAGCAAGGTATGATTGTCATACCTACAACTGGATTTATCTTTTTGGCAATGAGTAAACCTACAATTGaaa                                                                                                                   >  1:1477271/1‑141 (MQ=255)

                       gaCTTGATCTAACCCTTTAGCAAAAAATCCAACCAAATCTGTCACACTATATCCTAAAATCATTGCCCCTAAGCAAGGTATGATTGTCATACCTCCAACTGGATTTATCTTTTTGGCAATGAGTAAACCTACAATTGAaat                                                                                                                  >  1:16455/1‑141 (MQ=255)

                       gaCTTGATCTAACCCTTTAGCAAAAAATCCAACCAAATCTGTCACACTATATCCTAAAATCATTGCCCCTAAGCAAGGTATGATTGTCATACCTACAACTGGATTTATCTTTTTGGCAATGAGTAAACCTACAATTGAaat                                                                                                                  <  4:505977/141‑1 (MQ=255)

                           tGATCTAACCCTTTAGCAAAAAATCCAACCAAATCTGTCACACTATATCCTAAAATCATTGCCCCTAAGCAAGGTATGATTGTCATACCTACAACTGGATTTATCTTTTTGGCAATGAGTAAACCTACAATTGAaataata                                                                                                              <  1:176868/141‑1 (MQ=255)

                             aTCTAACCCTTTAGCAAAAAATCCAACCAAATCTGTCACACTATATCCTAAAATCATTGCCCCTAAGCAAGGTATGATTGTCATACCTACAACTGGATTTATCTTTTTGGCAATGAGTAAACCTACAATTGAaataataat                                                                                                            >  2:1573326/1‑141 (MQ=255)

                              tCTAACCCTTTAGCAAAAAATCCAACCAAATCTGTCACACTATATCCTAAAATCATTGCCCCTAAGCAAGGTATGATTGTCATACCTACACCTGGATTTATCTTTTTGGCAATGCGTAAACCTACAATTGAaataataata                                                                                                           <  2:765935/141‑1 (MQ=255)

                                       ttAGCAAAAAATCCAACCAAATCTGTCACACTATATCCTAAAATCATTGCCCCTAAGCAAGTTATGATTGTCATACCTACAACTGGATTTATCTTTTTGGCAATGAGTAAACCTACAATTGAAATAATAATAATGAGcccc                                                                                                  <  1:28567/141‑1 (MQ=255)

                                       ttAGCAAAAAATCCAACCAAATCTGTCACACTATATCCTAAAATCATTGCCCCTAAGCAAGGTATGATTGTCATACCTACAACTGGATTTATCTTTTTGGCAATGAGTAAACCTACAATTGAAATAATAATAATGAGcccc                                                                                                  <  1:28738/141‑1 (MQ=255)

                                         aGCAAAAAATCCAACCAAATCTGTCACACTATATCCTAAAATCATTGCCCCTAAGCAAGGTATGATTGTCATACCTACAACTGGATTTATCTTTTTGGCAATGAGTAAACCTACAATTGAAATAATAATAATGAGCCCCAt                                                                                                >  2:1018855/1‑141 (MQ=255)

                                              aaaaTCCAACCAAATCTGTCACACTATATCCTAAAATCATTGCCCCTAAGCAAGGTATGATTGTCATACCTACAACTGGATTTATCTTTTTGGCAATGAGTAAACCTACAATTGAAATAATAATAATGAGCCCCATTACtt                                                                                           <  1:1573326/141‑2 (MQ=255)

                                              aaaaTCCAACCAAATCTGTCACACTATATCCTAAAATCATTGCCCCTAAGCAAGGTATGATTGTCATACCTACAACTGGATTTATCTTTTTGGCAATGAGTAAACCTACAATTGAAATAATAATAATGAGCCCCATTACTg                                                                                           >  1:81238/1‑141 (MQ=255)

                                               aaaTCCAACCAAATCTGTCACACTATATCCTAAAATCATTGCCCCTAAGCAAGGTATGATTGTCATACCTACAACTGGATTTATCTTTTTGGCAATGAGTAAACCTACAATTGAAATAATAATAATGAGCCCCATTACTGt                                                                                          <  1:1040424/141‑1 (MQ=255)

                                                   ccaaccaaATGTGTCACAGTATATCCTAAAATCATTGCCCCTAAGCAAGGTATGATTGTCATACCTACAACTGGATTTATCTTTTGGGCAATGAGTAAACCTTCAATTGAAATAAGAATAATGTGCCCCATTACTGTTAAc                                                                                      <  4:708423/141‑1 (MQ=255)

                                                      cccaaATCTGTCACACTATATCCTAAAATCATTGCCCCTAAGCAAGGTATGATTGTCATACCTACAACTGGATTTATCTTTTTGGCAATGAGTAAACCTACAATTGAAATAATAATAATGAGCCCCATTACTGTTAACca‑c                                                                                  <  2:377842/140‑1 (MQ=255)

                                                          aaTCTGTCACACTATATCCTAAAATCATTGCCCCTAAGCAAGGTATGATTGTCATACCTACAACTGGATTTATCTTTTTGGCAATGAGTAAACCTACAATTGAAATAATAATAATGAGCCCCATTACTGTTAACCA‑Catat                                                                              >  1:216820/1‑141 (MQ=255)

                                                           aTCTGTCACACTATATCCTAAAATCATTGCCCCTAAGCAAGGTATGATTGTCATACCTACAACTGGATTTATCTTTTTGGCAATGAGTAAACCTACAATTGAAATAATAATAATGAGCCCCATTACTGTTAACCA‑CAtatt                                                                             >  2:937623/1‑141 (MQ=255)

                                                           aTCTGTCACACTATATCCTAAAATCATTGCCCCTAAGCAAGGTATGATTGTCATACCTACAACTGGATTTATCTTTTTGGCAATGAGTAAACCTACAATTGAAATAATAATAATGAGCCCCATTACTGTTAACCA‑CAtatt                                                                             <  1:1068740/141‑1 (MQ=255)

                                                              tGTCACACTATATCCTAAAATCATTGCCCCTAAGCAAGGTATGATTGTCATACCTACAACTGGATTTATCTTTTTGGCAATGAGTAAACCTACAATTGAAATAATAATAATg                                                                                                        <  2:114636/112‑1 (MQ=255)

                                                              tGTCACACTATATCCTAAAATCATTGCCCCTAAGCAAGGTATGATTGTCATACCTACAACTGGATTTATCTTTTTGGCAATGAGTAAACCTACAATTGAAATAATAATAATGAGCCCCATTACTGTTAACCA‑CATATTATc                                                                          >  1:1020517/1‑141 (MQ=255)

                                                              tGTCACACTATATCCTAAAATCATTGCCCCTAAGCAAGGTATGATTGTCATACCTACAACTGGATTTATCTTTTTGGCAATGAGTAAACCTACAATTGAAATAATAATAATGAGCCCCATTACTGTTAACCA‑CATATTATc                                                                          <  1:1110355/141‑1 (MQ=255)

                                                              tGTAACCCTATATAATAAAATCATTGCCCCTAAGCAAGGTATGATTGTAATAACTACAACCGGATTTATCTTTTTGGAAATGAGTAAACCTACAATTGAAATAATAATAATAAGCCCCATTACTGTTAAACA‑GAtattaac                                                                          >  4:239903/1‑139 (MQ=255)

                                                                tCACACTATATCCTAAAATCATTGCCCCTAAGCAAGGTATGATTGTCATACCTACAACTGGATTTATCTTTTTGGCAATGAGTAAACCTACAATTGAAATAATAATAATGAGCCCCATTACTGTTAACCA‑CATATTATCAc                                                                        >  1:1220394/1‑141 (MQ=255)

                                                                   cacTATATCCTAAAATCATTGCCCCTGAGCAAGGTATGATTGTCATACCTCAAACTGGATTTATCTTTTTGGCAGTGAGTAAACCTACAATTGAAATAATAATAATGAACCCCATTACTGTTAACCA‑CATATTCTCCCTAt                                                                     >  4:425697/1‑141 (MQ=255)

                                                                     cTATATCCTAAAATCATTGCCCCTAAGCAAGGTATGATTGTCATACCTACAACTGGATTTATCTTTTTGGCAATGAGTAAACCTACAATTGAAATAATAATAATGAGCCCCATTACTGTTAACCA‑CATATTATCACTATTc                                                                   <  1:770057/141‑1 (MQ=255)

                                                                      tataTCCTAAAATCATTGCCCCTAAGCAAGGTATGATTGTCATACCTACAGCTGGATTTATCTTTTTGTCAATGAGTAAACCTACAATTGAAATAATAATAATGAGCCCCATTACTGTTAACCA‑CATATTATCACTATTCa                                                                  <  4:609163/141‑1 (MQ=255)

                                                                           ccTAAAATCATTGCCCCTAAGCAAGGTATGATTGTCATACCTACAACTGGATTTATCTTTTTGGCAATGAGTAAACCTACAATTGAAATAATAATAATGAGCCCCATTACTGTTAACAA‑CATATTATCACTATTCAtatta                                                             >  1:1617978/1‑141 (MQ=255)

                                                                            cTAAAATCATTGCCCCTAAGCAAGGTATGATTGTCATACCTACAACTGGATTTATCTTTTTGGCAATGAGTAAACCTACAATTGAAATAATAATAATGAGCCCCATTACTGTTAACCA‑CATATTATCACTATTCAtattat                                                            <  2:1477271/141‑1 (MQ=255)

                                                                             tAAAATCATTGCCCCTAAGCAAGGTATGATTGTCATACCTACAACTGGATTTATCTTTTTGGCAATGAGTAAACCTACAATTGAAATAATAATAATGAGCCCCATTACTGTTAACCA‑CATATTATCACTATTCATattatt                                                           >  1:94080/1‑141 (MQ=255)

                                                                             tAAAATCATTGCCCCTAAGCAAGGTATAATTGTCATACCTACAACTGGATTTATCTTTTTGGCAATGAGTAAACCTACAATTGAAATAATAATAATGAGCCCCATTACTGTTAACCA‑CATATTATCACTATTCATattatt                                                           <  2:1346093/141‑1 (MQ=255)

                                                                              aaaaTCATTGCCCCTAAGCAAGGTATGATTGTCATACCTACAACTGGATTTATCTTTTTGGCAATGAGTAAACCTACAATTGAAATAATAATAATGAGCCCCATTACTGTTAACCA‑CATATTATCACTATTCATATTAttt                                                          <  2:12570/141‑1 (MQ=255)

                                                                                     ttGCCCCTAAGCAAGGTATGATTGTCATACCTACAACTGGATTTATCTTTTTggcaatgattttaggatatagtgtgacagatttggttggattttttgctaaagggttagatcaagtcatcaacgttgttattatgttta                                                    <  4:38648‑M2/141‑90 (MQ=255)

                                                                                      tGCCCCTGAGCAAGGTATGATTGTCATACCTACAACTGGATTTATCTTTTTggcaatgattttaggatatagtgtgacagatttggttggattttttgctaaagggttagatcaagtcatcaacgttgttattatgtttat                                                   <  3:625689‑M2/141‑91 (MQ=255)

                                                                                      tGCCCCTAAGCAAGGTATGATTGTCATACCTACAACTGGATTTATCTTTTTGGCAATGAGTAAACCTACAATTGAAATAATAATAATGAGCCCCATTACTGTTAACCA‑CATATTATCACTATTCATATTATTTTctccctc                                                  >  2:592653/1‑141 (MQ=255)

                                                                                        ccccTAAGCAAGGTATGATTGTCATACCTACAACTGGATTTATCTTTTTggcaatgattttaggatatagtgtgacagatttggttggattttttgctaaagggttagatcaagtcatcaacgttgttattatgtttatct                                                 <  2:1201011‑M2/141‑93 (MQ=255)

                                                                                        ccccTAAGCAAGGTATGATTGTCATACCTACAACTGGATTTATCTTTTTGGCAATGAGTAAACCTACAATTGAAATAATAATAATGAGCCCCATTACTGTTAACCA‑CATATTATCACTATTCATATTATTTTCTCCCTCCa                                                <  3:448705/141‑1 (MQ=255)

                                                                                        ccccTAAGCAAGGTATGATTGTCATACCTACAACTGGATTTATCTTTTTGGCAATGAGTAAACCTACAATTGAAATAATAATAATGAGCCCCATTACTGTTAACCA‑CATATTATCACTATTCATATTATTTTCTCCCTCCa                                                >  1:44727/1‑141 (MQ=255)

                                                                                           cTAAGCAAGGTATGATTGTCATACCTACAACTGGATTTATCTTTTTGGCAATGAATAAACCTACAATTGAAATAATAATAATGAGCCCCATTACTGTTAACCA‑CATATTATCACTATTCATATTATTTTCTCCCTCCACtt                                             <  2:1318241/141‑1 (MQ=255)

                                                                                            tAAGCAAGGTATGATTGTCATACCTACAACTGGATTTATCTTTTTGGCAATGAGTAAACCTACAATTGAAATAATAATAATGAGCCCCATTACTGTTAACCA‑CATATTATCACTATTCATATTATTTTCTCCCTCCACttt                                            <  3:8380/141‑1 (MQ=255)

                                                                                                cAAGGTATGATTGTCATACCTACAACTGGATTTATCTTTTTGGCAATGAGTAAACCTACAATTGAAATAATAATAATGAGCCCCATTACTGTTAACCA‑CATATTATCACTATTCATATTATTTTCTCCCTCCACTTTTAAt                                        <  4:158141/141‑1 (MQ=255)

                                                                                                cAAGGTATGATTGTCATACCTACAACTGGATTTATCTTTTTGGCAATGAGTAAACCTACAATTGAAATAATAATAATGAGCCCCATTACTGTTAACCA‑CATATTATCACTATTCATATTATTTTCTCCCTCCACTTTTAAt                                        <  2:559490/141‑1 (MQ=255)

                                                                                                cAAGGTATGATTGTCATACCTACAACTGGATTTATCTTTTTGGCAATGAGTAAACCTACAATTGAAATAATAATAATGAGCCCCATTACTGTTAACCA‑CATATTATCACTATTCATATTATTTTCTCCCTCCACTTTTAAt                                        <  2:524981/141‑1 (MQ=255)

                                                                                                cAAGGTATGATTGTCATACCTACAACTGGATTTATCTTTTTGGCAATGAGTAAACCTACAATTGAAATAATAATAATGAGCCCCATTACTGTTAACCA‑CATATTATCACTATTCATATTATTTTCTCCCTCCACTTTTAAt                                        <  1:115730/141‑1 (MQ=255)

                                                                                                cAAGGTATGATTGTCAAACCTACAACTAGATTTATCTTTTTGGCAATGGGTAAACTTACAATTGAAATAATAATAATGATCCCCATTACTGTCAACCA‑CATATTATCACTATTCATAATATTTTCTCCCTCCACTTTAAAt                                        <  4:327288/141‑1 (MQ=255)

                                                                                                   ggTATGATTGTCATACCTACAACTGGATTTATCTTTTTGGCAATGAGTAAACCTACAATTGAAATAATAATAATGAGCCCCATTACTGTTAACCA‑CATATTATCACTATTCATATTATTTTCTCCCTCCACTTTTAATACa                                     >  1:955401/1‑141 (MQ=255)

                                                                                                      aTGATTGTCATACCTACAACTGGATTTATCTTTTTGGCAATGAGTAAACCTACAATTGAAATAATAATAATGAGCCCCATTACTGTTAACCA‑CATATTATCACTATTCATATTATTTTCTCCCTCCACTTTTAATACAAtt                                  <  3:406522/141‑1 (MQ=255)

                                                                                                      aTGATTGTCATACCTACAACTGGATTTATCTTTTTGGCAATGAGTAAACCTACAATTGAAATAATAATAATGAGCCCCATTACTGTTAACCA‑CATATTATCACTATTCATATTATTTTCTCCCTCCACTTTTAATACAAtt                                  <  1:112763/141‑1 (MQ=255)

                                                                                                      aTGATTGTCATACCTACAACTGGATTTATCTTTTTGGCAATGAGTAAACCTACAATTGAAATAATAATAATGAGCCCCATTACTGTTAACCA‑CATATTATCACTATTCATATTATTTTCTCCCTCCACTTTTAATACAAtt                                  <  3:26102/141‑1 (MQ=255)

                                                                                                      aTGATTGTCATACCTACAACTGGATTTATCTTTTTGGCAATGAGTAAACCTACAATTGAAATAATAATAATGAGCCCCATTACTGTTAACCA‑CATATTATCACTATTCATATTATTTTCTCCCTCCACTTTTAATACAAtt                                  <  1:701612/141‑1 (MQ=255)

                                                                                                        gATTGTCATACCTACAACTGGATTTATCTTTTTGGCAATGAGTAAACCTACAATTGAAATAATAATAATGAGCCCCATTACTGTTAACCA‑CATATTATCACTATTCATATTATTTTCTCCCTCCACTTTTAATACAATTTa                                >  2:15223/1‑141 (MQ=255)

                                                                                                         aTTGTCATACCTACAACTGGATTTATCTTTTTGGCAATGAGTAAACCTACAATTGAAATAATAATAATGAGCCCCATTACTGTTAACCA‑CATATTATCACTATTCATATTATTTTCTCCCTCCACTTTTAATACAATTTAc                               <  2:403674/141‑1 (MQ=255)

                                                                                                         aTTGTCATACCTACAACTGGATTTATCTTTTTGGCAATGAGTAAACCTACAATTGAAATAATAATAATGAGCCCCATTACTGTTAACCA‑CATATTATCACTATTCATATTATTTTCTCCCTCCACTTTTAATACAATTTAc                               <  4:102321/141‑1 (MQ=255)

                                                                                                         aTTGTCATACCTACAACTGGATTTATCTTTTTGGCAATGAGTAAACCTACAATTGAAATAATAATAATGAGCCCCATTACTGTTAACCA‑CATATTATCACTATTCATATTATTTTCTCCCTCCACTTTTAATACAATTTAc                               <  4:22472/141‑1 (MQ=255)

                                                                                                           tGTCATACCTACAACTGGATTTATCTTTTTGGCAATGAGTAAACCTACAATTGAAATAATAATAATGAGCCCCATTACTGTTAACCA‑CATATTATCACTATTCATATTATTTTCTCCCTCCACTTTTAATACAATTTACAt                             <  2:1008373/141‑1 (MQ=255)

                                                                                                                tACCTACAACTGGATTTATCTTTTTGGCAATGAGTAAACCTACAATTGAAATAATAATAATGAGCCCCATTACTGTTAACCA‑CATATTATCACTATTCATATTATTTTCTCCCTCCACTTTTAATACAATTTACATAATcc                        >  2:1573063/1‑141 (MQ=255)

                                                                                                                 aCCTACAACTGGATTTATCTTTTTTTTTTTTTTTAAACCTACAATTGAAATAATAATAATGAGCCCCATTACTGTTAACCA‑CATATTATCACTATTCATATTATTTTCTCCCTCCACTTTTAATACAATTTACATAATctc                       >  2:971127/1‑139 (MQ=255)

                                                                                                                   cTACAACTGGATTTATCTTTTTGGCAATGAGTAAACCTACAATTGAAATAATAATAATGAGCCCCATTACTGTTAACCA‑CATATTATCACTATTCATATTATTTTCTCCCTCCACTTTTAATACAATTTACATAATccccc                     >  3:471631/1‑141 (MQ=255)

                                                                                                                       aaCTGTATTTATCTTTTTGGCAATGAGTAAACCTACAATTGGAATAATAATAATGAGCCCCATTACTGTTAACCA‑CATATTATCACTATTCATATTATTTCCTCCCTCCACTTTTAATACAATTTACATAATCCCCCTCtt                 <  2:1424585/141‑1 (MQ=255)

                                                                                                                         ctcgATTTATCTTTTTGGCCATGAGTAAACCTACAATTGACATAATAATCACGCGCCCCATTACTG‑TACCCACCCTCTAATCACTACTCATCTTATTTTCTCCCTCCACTTTTAATACAATTTACATAATCCCCCTCtttc               <  1:1402624/138‑2 (MQ=255)

                                                                                                                         cTGGATTTATCTTTTTGGCAATGAGTAAACCTACAATTGAAATAATAATAATGAGCCCCATTACTGTTAACCA‑CATATTATCACTATTCATATTATTTTCTCCCTCCACTTTTAATACAATTTACATAATCCCCCTCTTTa               <  3:493131/141‑1 (MQ=255)

                                                                                                                            gATTTATCTTTTTGGCAATGAGTAAACCTACAATTGAAATAATAATAATGAGCCCCATTACTGTTAACCA‑CATATTATCACTATTCATATTATTTTCTCCCTCCACTTTTAATACAAttt                                 >  1:528594/1‑120 (MQ=255)

                                                                                                                            gATTTATCTTTTTGGCAATGAGTAAACCTACAATTGAAATAATAATAATGAGCCCCATTACTGTTAACCA‑CATATTATCACTATTCATATTATTTTCTCCCTCCACTTTTAATACAATTTACATAATCCCCCTCTTTAACt            <  3:322607/141‑1 (MQ=255)

                                                                                                                            gATTTATCTTTTTGGCAAGGAGTAAACCTACAATTGAAATAATAATAATGAGCCCCATTACTGTTAACCA‑CATATTATCACTATTCATAGTATTTTCTCCCTCCACTTTTAATACAATTTACATAATCCCCCTCTTTAACt            >  2:450309/1‑141 (MQ=255)

                                                                                                                              tttATCTTTTTGGCAATGAGTAAACCTACAATTGAAATAATAATAATGAGCCCCATTACTGTTAACCA‑CATATTATCACTATTCATATTATTTTCTCCCTCCACTTTTAATACAATTTACATAATCCCCCTCTTTAACTTa          <  4:269363/141‑1 (MQ=255)

                                                                                                                                tATCTTTTTGGCAATGAGTAAACCTACAATTGAAATAATAATAATGAGCCCCATTACTGTTAACCA‑CATATTATCACTATTCATATTATTTTCTCCCTCCACTTTTAATACAATTTACATAATCCCCCTCTTTAACTTaaa        >  3:156572/1‑141 (MQ=255)

                                                                                                                                   cttcttGGCAATGAGTAAACCTACAATTGAAATAATAATAATAAGCCCCATTACTGTTAACCA‑CATATTATCACTATTCATATTATTTTCTCCTTCCACTTTTAATACAATTTACATAATCCCCCTCTTTAACTTAAatat     >  4:342736/1‑141 (MQ=255)

                                                                                                                                   cTTTTTGGCAATGAGTAAACCTACAATTGAAATAATAATAATGAGCCCCATTACTGTTAACCA‑CATATTATCACTATTCATATTATTTTCTCCCTCCACTTTTAATACAATTTACATAATCCCCCTCTTTAACTTAAatat     >  1:253311/1‑141 (MQ=255)

                                                                                                                                   cTTTTTGGCAATGAGTAAACCTACAATTGAAATAATAATAATGAGCCCCATTACTGTTAACCA‑CATATTATCACTATTCATATTATTTTCTCCCTCCACTTTTAATACAATTTACATAATCCCCCTCTTTAACTTAAagat     <  1:809276/141‑1 (MQ=255)

                                                                                                                                    tttttGGCAATGAGTAAACCTACAATTGAAATAATAATAATGAGCCCCATTACTGTTAACCA‑CATATTATCACTATTCATATTATTTTCTCCCTCCACTTTTAATACAATTTACATAATCCCCCTCTTTAACTTAAAtatt    >  1:373076/1‑141 (MQ=255)

ATAAACATAATAACAACGTTGATGACTTGATCTAACCCTTTAGCAAAAAATCCAACCAAATCTGTCACACTATATCCTAAAATCATTGCCCCTAAGCAAGGTATGATTGTCATACCTACAACTGGATTTATCTTTTTGGCAATGAGTAAACCTACAATTGAAATAATAATAATGAGCCCCATTACTGTTAACCA‑CATATTATCACTATTCATATTATTTTCTCCCTCCACTTTTAATACAATTTACATAATCCCCCTCTTTAACTTAAATATTAT  >  USA300TCH1516_ALE/2760787‑2761061

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.