| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2840863 | 190 (1.040) | 4 (0.020) | 4/238 | NT | 2.1% | intergenic (‑184/+121) | hisZ/USA300HOU_RS14555 | ATP phosphoribosyltransferase regulatory subunit/hypothetical protein |
| ? | USA300TCH1516_ALE | = 2840932 | 197 (1.150) | intergenic (‑253/+52) | hisZ/USA300HOU_RS14555 | ATP phosphoribosyltransferase regulatory subunit/hypothetical protein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CTTGGTATTTTCGTTGTTTGCTTTACTTCTCTACCACGCTAAAGTGTAATATGATTAATAACTTATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2840718‑2840863‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaggcaagGACAATATGTGCAAGAAGTACAACTTCAATATAAAAATCTTGGTTAAGCATTTTTATAGGCACAAATGTCTTGCCTTTTTTATTTTAAAAAATTTTAAAATCAATACACCGAATTTTCTGAAAAAGGTTGTAATGTATTG < USA300TCH1516_ALE/2840932‑2840793 CTTGGTATTTTCGTTGTTTGCTTTACTTCTCTACCACGCTAAAGTGTAATATGATTAATAACTTATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAG > 3:383489/1‑141CTTGGTATTTTCGTTGTTTGCTTTACTTCTCTACCACGCTAAAGTGTAATATGATTAATAACTTATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAG > 3:254105/1‑141 TTGGTATTTTCGTTGTTTGCTTTACTTCTCTACCAAACTAAAGTGTAATATGATTAATAACTTATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTTATTTTAAAATAAAAAAAAAAAAAAAAGG < 2:572432/141‑1 TGGTATTTTCGTTGTTTGCTTTACTTCTCTACCACGCTAAAGTGTAATATGATTAATAACTTATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGC < 1:179433/141‑1 TGGTATTTCCGTTGTTTGCTTTACTTCTCTACCACGCTAAAGTGTAATATGATTAATAACTTATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGC < 3:424451/141‑1 GTATTTTCGTTGTTTGCTTTACTTCTCTACCACGCTAAAGTGTAATATGATTAATAACTTATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAA < 1:816092/141‑1 GTATTTTCGTTGTTTGCTTTACTTCTCTACCACGCTAAAGTGTAATATGATTAATAACTTATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATAAAATAAAATAAAAAAGGCAA < 2:1220838/141‑1 GTATTTTCGTTGTTTGCTTTACTTCTCTACCACGCTAAAGTGTAATATGATTAATAACTTATCATTTTTAGCAATACATTACAAACTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAA < 4:301099/141‑1 ATATGATTAATAACTTATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGGACAATATGTGCAAGAAGTACAACTTCAATATAAAAATCTTGG > 1:1392106/1‑141 CATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGGACAATATGTGCAAGAAGTACAACTTCAATATAAAAATCTTGGTTAAGCATTTTTATAGGCACAAATGTCTTGCC < 2:1392106/141‑1 TTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGGACAATATGTGCAAGAAGTACAACTTCAATATAAAAATCTTGGTTAAGCATTTTTATAGGCACAAATGTCTTGCCTTTTTTATTTTA < 3:232667/141‑1 TCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGGACAATATGTGCAAGAAGTACAACTTCAATATAAAAATCTTGGTTAAGCATTTTTATAGACACAAATGTCTTGCCTTTTTTATTTTAAA < 2:1184620/141‑1 agAAGGCAAGGACAATATGTGCAAGAAGGACAACTTCAATATAAAAATCTTGGTTAAGCATTTTTATAGGCACAAATGTCTTGCCTTTTTTATTTTAAAAAATTTTAAAATCAATACACCGAATTTTCTGAAAAAGGTTGT < 1:723728/139‑1 AAGGCAAGGACAATATGTGCAAGAAGTACAACTTCAATATAAAAATCTTGGTTAAGCATTTTTATAGGCACAAATGTCTTGCCTTTTTTATTTTAAAAAATTTTAAAATCAATACACCGAATTTTCTGAAAAAGGTTGTAA > 2:334846/1‑141 GGCAAGGACAATATGTGCAAGAAGTACAACTTCAATATAAAAATCTTGGTTAAGCATTTTTATAGGCACAAATGTCTTGCCTTTTTTATTTTAAAAAATTTTAAAATCAATACACCGAATTTTCTGAAAAAGGTTGTAATG > 4:513319/1‑141 GCAAGGACAATATGTGCAAGAAGTACAACTTCAATATAAAAATCTTGGTTAAGCATTTTTATAGGCACAAATGTCTTGCCTTTTTTATTTTAAAAAATTTTAAAATCAATACACCGAATTTTCTGAAAAAGGTTGTAATGT < 2:1193774/141‑1 AAGGACAATATGTGCAAGAAGTACAACTTCAATATAAAAATCTTGGTTAAGCATTTTTATAGGCACAAATGTCTTGCCTTTTTTATTTTAAAAAATTTTAAAATCAATACACCGAATTTTCTGAAAAAGGTTGTAATGTAT < 2:1615046/141‑1 AAGGACAATATGTGCAAGAAGTACAACTTCAATATAAAAATCTTGGTTAAGCATTTTTATAGGCACAAATGTCTTGCCTTTTTTATTTTAAAAAATTTTAAAATCAATACACCGAATTTTCTGAAAAAGGTTGTAATGTAT < 1:206597/141‑1 AAGGACAATATGTGCAAGAAGTACAACTTCAATATAAAAATCTTGGTTAAGCATTTTTATAGGAAAAAATGTCTTGACTTTTTTATTTTAAAAAATTTTAAAATCAATACAGCGAATTTTCTGAAAAAGGTTGTAAaaaaa < 2:542288/141‑6 AGGACAATATGTGCAAGAAGTACAACTTCAATATAAAAATCTTGGTTAAGCATTTTTATAGGCACAAATGTCTTGCCTTTTTTATTTTAAAAAATTTTAAAATCAATACACCGAATTTTCTGAAAAAGGTTGTAATGTATT < 2:829046/141‑1 AGGACAATATGTGCAAGAAGTACAACTTCAATATAAAAATCTTGGTTAAGCATTTTTATAGGCACAAATGTCTTGCCTTTTTTATTTTAAAAAATTTTAAAATCAATACACCGAATTTTCTGAAAAAGGTTGTAATGTATT > 2:1428231/1‑141 AGGACAATATGTGCAAGAAGTACAACTTCAATATAAAAATCTTGGTTAAGCATTTTTATAGGCACAAATGTCTTGCCTTTTTTATTTTAAAAAATTTTAAAATCAATACACCGAATTTTCTGAAAAAGGTTGTAATGTATT > 3:683195/1‑141 AGGACAATATGTGCAAGAAGTACAACTTCAATATAAAAATCTTGGTTAAGCATTTTTATAGGCACAAATGTCTTGCCTTTTTTATTTTAAAAAATTTTAAAATCAATACACCGAATTTTCTGAAAAAGGTTGTAATGTATT < 1:1546091/141‑1 GGACAATATGTGCAAGAAGTACAACTTCAATATAAAAATCTTGCTTAAGCATTTTTATAGGCACAAATGTCTTGCCTTTTTTATTTTAAAAAATTTTAAAATCAATACACCGAATTTTCTGAAAAAGGTTGTAATGTATTG < 1:1305340/141‑1 CTTGGTATTTTCGTTGTTTGCTTTACTTCTCTACCACGCTAAAGTGTAATATGATTAATAACTTATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2840718‑2840863‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaggcaagGACAATATGTGCAAGAAGTACAACTTCAATATAAAAATCTTGGTTAAGCATTTTTATAGGCACAAATGTCTTGCCTTTTTTATTTTAAAAAATTTTAAAATCAATACACCGAATTTTCTGAAAAAGGTTGTAATGTATTG < USA300TCH1516_ALE/2840932‑2840793 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |