New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE = 2840863190 (1.040)4 (0.020) 4/238 NT 2.1% intergenic (‑184/+121) hisZ/USA300HOU_RS14555 ATP phosphoribosyltransferase regulatory subunit/hypothetical protein
?USA300TCH1516_ALE = 2840932 197 (1.150)intergenic (‑253/+52) hisZ/USA300HOU_RS14555 ATP phosphoribosyltransferase regulatory subunit/hypothetical protein
Rejected: Frequency below/above cutoff threshold.

Only 100 of 240 total aligned reads displayed.

ATTTTCGTTGTTTGCTTTACTTCTCTACCACGCTAAAGTGTAATATGATTAATAACTTATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGAT  >  USA300TCH1516_ALE/2840724‑2841003
                                                                                                                                           |                                                                                                                                            
aTTTTCGTTGTTTGCTTTACTTCTCTACCACGCTAAAGTGTAATATGATTAATAACTTATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGa                                                                                                                                             <  1:1421014/141‑1 (MQ=255)
  tttCGTTGTTTGCTTTACTTCTCTACCACGCTAAAGTGTAATATGATTAATAACTTATCATTTTTAGCAATATATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACa                                                                                                                                           <  2:361208/141‑1 (MQ=255)
    tCGTTGTTTGCTTTACTTCTCTACCACGCTAAAGTGTAATATGATTAATAACTTATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACAtt                                                                                                                                         >  2:201493/1‑141 (MQ=255)
       ttgttTGCTTTACTTCTCTACCACGCTAAAGTGTAATATGATTAATAACTTATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTtgt                                                                                                                                      >  1:335133/1‑141 (MQ=255)
        tgttTGCTTTACTTCTCTACCACGCTAAAGTGTAATATGATTAATAACTTATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTtgtg                                                                                                                                     >  2:635035/1‑141 (MQ=255)
         ttttGCTTTACTTCTCTACCACGCTAAAGTGTAATATTATTAATAACTTATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAATTTTTTTAAAATAAAAAAGGCAAGACACTtgtcc                                                                                                                                    <  4:585207/140‑3 (MQ=255)
         gttTGCTTTACTTCTCTACCACGCTAAAGTGTAATATGATTAATAACTTATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGc                                                                                                                                    <  1:995025/141‑1 (MQ=255)
          tttGCTTTACTTCTCTACCACGCTAAAGTGTAATATGATTAATAACTTATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGcc                                                                                                                                   <  1:556364/141‑1 (MQ=255)
            tGCTTTACTTCTCTACCACGCTAAAGTGTAATATGATTAATAACTTATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCta                                                                                                                                 <  3:675589/141‑1 (MQ=255)
            tGCTTTACTTCTCTACCACGCTAAAGTGTAATATGATTAATAACTTATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTCAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCta                                                                                                                                 <  2:1429290/141‑1 (MQ=255)
             gCTTTACTTCTCTACCACGCTAAAGTGTAATATGATTAATAACTTATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTTCCtat                                                                                                                                >  3:87457/1‑141 (MQ=255)
                ttACTTCTCTACCACGCTAAAGTGTAATATGATTAATAACTTATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAATAAGGCAAGACATTTGTGCCTATaaa                                                                                                                             >  2:1293451/1‑141 (MQ=255)
                ttACTTCTCTACCACGCTAAAGTGTAATATGATTAATAACTTATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATaaa                                                                                                                             >  1:1475092/1‑141 (MQ=255)
                ttACTTCTCTACCACGCTAAAGTGTAATATGATTAATAACTTATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATaaa                                                                                                                             >  4:57050/1‑141 (MQ=255)
                ttACTTCTCTACCACGCTAAAGTGTAATATGATTAATAACTTATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATaaa                                                                                                                             <  1:1384232/141‑1 (MQ=255)
                ttACTTCTCTACCACGCTAAAGTGTAATATGATTAATAACTTATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATaaa                                                                                                                             <  1:444673/141‑1 (MQ=255)
                   cTTCTCTACCACGCTAAAGTGTAATATGATTAATAACTTATCATTTTTAGCAATACATTACAACCTTTTTTTTTTTTTTTTGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAAt                                                                                                                          >  2:740208/1‑141 (MQ=255)
                   cTTCTCTACCACGCTAAAGTGTAATATGATTAATAACTTATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAAt                                                                                                                          >  2:1517309/1‑141 (MQ=255)
                       tctACCACGCTAAAGTGTAATATGATTAATAACTTATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCtt                                                                                                                      >  4:451386/1‑141 (MQ=255)
                         tACCACGCTAAAGTGTAATATGATTAATAACTTATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTaa                                                                                                                    <  3:521347/141‑1 (MQ=255)
                          aCCACGCTAAAGTGTAATATGATTAATAACTTATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAAc                                                                                                                   >  4:281525/1‑141 (MQ=255)
                           ccACGCTAAAGTGTAATATGATTAATAACTTATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAAcc                                                                                                                  <  1:1146767/141‑1 (MQ=255)
                                cTAAAGTGTAATATGATTAATAACTTATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGAt                                                                                                             <  2:846724/141‑1 (MQ=255)
                                cTAAAGTGTAATATGATTAATAACTTATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGAt                                                                                                             <  2:531080/141‑1 (MQ=255)
                                   aaGTGTAATATGATTAATAACTTATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGAtttt                                                                                                          <  1:287369/141‑1 (MQ=255)
                                   aaGTGTAATATGATTAATAACTTATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAAGTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGAtttt                                                                                                          <  1:27750/141‑1 (MQ=255)
                                     gtgtAATATGATTAATAACTTATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTta                                                                                                        >  2:160631/1‑141 (MQ=255)
                                       gtAATATGATTAATAACTTATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTtata                                                                                                      >  4:351447/1‑141 (MQ=255)
                                        tAATATGATTAATAACTTATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTatat                                                                                                     >  2:1576590/1‑141 (MQ=255)
                                         aaTATGATTAATAACTTATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATAtt                                                                                                    >  2:1366983/1‑141 (MQ=255)
                                          atatGATTAATAACTTATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTg                                                                                                   >  1:416427/1‑141 (MQ=255)
                                          atatGATTAATAACTTATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTg                                                                                                   >  4:520378/1‑141 (MQ=255)
                                          atatGATTAATAACTTATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTNGTGNCTATAAAAATGCTTNNCCAAGATTTTTATATTg                                                                                                   <  1:1365174/141‑1 (MQ=255)
                                            atGATTAATAACTTATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGaa                                                                                                 >  3:443340/1‑141 (MQ=255)
                                              gATTAATAACTTATCATTTTTATCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGt                                                                                               <  2:827836/141‑1 (MQ=255)
                                              gATTAATAACTTATCATTTTTAGCAATACATTACAACCATTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGt                                                                                               >  1:878834/1‑141 (MQ=255)
                                                ttAATAACTTATCATTTTTAGCAATACATTACAACCTTTTTCTGATAATTTGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAATAATGCTTAACCAAGATTTTTATATTGAAGTTg                                                                                             >  2:1475873/1‑141 (MQ=255)
                                                 taataaCTTATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGt                                                                                            <  2:106500/141‑1 (MQ=255)
                                                 taataaCTTATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGt                                                                                            >  4:170988/1‑141 (MQ=255)
                                                   ataaCTTATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTAc                                                                                          <  2:780049/141‑1 (MQ=255)
                                                    taaCTTATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTAct                                                                                         <  1:1504223/141‑1 (MQ=255)
                                                     aaCTTATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTActt                                                                                        <  1:801349/141‑1 (MQ=255)
                                                      aCTTATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTActtc                                                                                       <  1:1103662/141‑1 (MQ=255)
                                                      aCTTATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTGTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTActtc                                                                                       <  2:684310/141‑1 (MQ=255)
                                                       cTTATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTActtct                                                                                      >  2:426838/1‑141 (MQ=255)
                                                        ttATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGGCATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTActtctt                                                                                     >  1:1602190/1‑141 (MQ=255)
                                                        ttATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACAAAGATTTTTATATTGAAGTTGTActtatt                                                                                     >  4:643249/1‑141 (MQ=255)
                                                         tATCATTTTTAGCAATACATTACAACCTTTTTCTTTAATTTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAACAATTCTTAACCAAAATTTTTATATTGAATTTGTACTTCTTg                                                                                    >  2:1019441/1‑141 (MQ=255)
                                                         tATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTg                                                                                    >  1:405367/1‑141 (MQ=255)
                                                           tCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGca                                                                                  <  1:1002899/141‑1 (MQ=255)
                                                              tttttAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTAT‑AAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACata                                                                              <  1:1073171/141‑1 (MQ=255)
                                                                tttAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACatat                                                                             >  4:217503/1‑141 (MQ=255)
                                                                 ttAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATAtt                                                                            >  3:352846/1‑141 (MQ=255)
                                                                 ttAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATAtt                                                                            <  1:1399189/141‑1 (MQ=255)
                                                                 ttAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATAtt                                                                            <  1:1138281/141‑1 (MQ=255)
                                                                      aaTACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCct                                                                       <  1:1546091‑M2/141‑3 (MQ=255)
                                                                      aaTACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCct                                                                       >  3:683195‑M2/1‑139 (MQ=255)
                                                                       tttttttacaacCTTTTTCAGAAAATTCGCTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGTCAAGACATTTTTTCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCctt                                                                      <  2:542288‑M2/136‑4 (MQ=255)
                                                                       aTACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCctt                                                                      <  2:1615046‑M2/141‑4 (MQ=255)
                                                                         aCATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCcttgc                                                                    <  2:1193774‑M2/141‑6 (MQ=255)
                                                                          cATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGgacaatatgtgcaagaagtacaacttcaatataaaaatcttggttaagcatttttataggcacaaatgtcttgcc                                                                   <  2:1392106‑M1/141‑76 (MQ=255)
                                                                            ttACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCcttgcctt                                                                 >  2:334846‑M2/1‑133 (MQ=255)
                                                                                aaCCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCttatta                                                             >  4:661421/1‑141 (MQ=255)
                                                                                     ttttCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTaa                                                        >  1:1237164/1‑141 (MQ=255)
                                                                                      tttCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGgacaatatgtgcaagaagtacaacttcaatataaaaatcttggttaagcatttttataggcacaaatgtcttgccttttttatttta                                                       <  3:232667‑M1/141‑88 (MQ=255)
                                                                                       ttCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTTCACATATTGTCCTTGCCTTATTATGTAAAg                                                      >  4:387708/1‑141 (MQ=255)
                                                                                        tCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGt                                                     >  1:754061/1‑141 (MQ=255)
                                                                                        tCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGt                                                     >  2:884405/1‑141 (MQ=255)
                                                                                         cAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGtt                                                    <  2:231801/141‑1 (MQ=255)
                                                                                         aaGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGtt                                                    <  2:1350619/140‑1 (MQ=255)
                                                                                           gAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTAt                                                  >  2:167273/1‑141 (MQ=255)
                                                                                           gAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTAt                                                  >  2:1138775/1‑141 (MQ=255)
                                                                                           gAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTAt                                                  <  1:559735/141‑1 (MQ=255)
                                                                                                   gttgtATTGATTTTAAAATAAATAAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATtttctttc                                          <  2:1171026/139‑1 (MQ=255)
                                                                                                        aTTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCt                                     <  3:551970/141‑1 (MQ=255)
                                                                                                          tGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCttt                                   <  1:552160/141‑1 (MQ=255)
                                                                                                              tttAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTttat                               <  3:669577/141‑1 (MQ=255)
                                                                                                               ttAAAAAATTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTttatt                              >  4:344500/1‑141 (MQ=255)
                                                                                                                  aaaTTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTttattata                           >  2:49334/1‑139 (MQ=255)
                                                                                                                     ttttttAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGca                                                                                  >  2:146954/1‑83 (MQ=255)
                                                                                                                      tttttAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTa                       <  2:389665/141‑1 (MQ=255)
                                                                                                                      tttttAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTa                       <  2:140142/141‑1 (MQ=255)
                                                                                                                       ttttAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTaa                      >  2:1252633/1‑141 (MQ=255)
                                                                                                                       ttttAAAATAAAAAAGGCAAGACATTTATGCCTATAAAAATGCTTAACCACGATTTTTATATAGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTaa                      >  3:232700/1‑141 (MQ=255)
                                                                                                                        tttAAAATAAAAAAGGCAAGACATTTGTGTCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCcttgccttttttattttaaaaaattttaaaatcaatacaccgaattttctga                     <  2:1184620‑M2/141‑53 (MQ=255)
                                                                                                                        tttAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAAc                     <  1:590020/141‑1 (MQ=255)
                                                                                                                            aaataaaaAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTAtt                 >  1:742787/1‑141 (MQ=255)
                                                                                                                             tttaaaaAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTAttc                >  1:85333/3‑141 (MQ=255)
                                                                                                                                 aaaaaGGCAAGACATTTGTGCCTATAAAAATGCTTACCCAAGATTTTTATCTTGAAATTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCa            <  1:487519/141‑1 (MQ=255)
                                                                                                                                  aaaaGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCAt           <  2:1425699/141‑1 (MQ=255)
                                                                                                                                   aaaGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATa          >  1:385636/1‑141 (MQ=255)
                                                                                                                                     aGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAAt        <  2:1133627/141‑1 (MQ=255)
                                                                                                                                      ggCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATc       <  3:186968/141‑1 (MQ=255)
                                                                                                                                      ggCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATc       >  1:634492/1‑141 (MQ=255)
                                                                                                                                       gCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATcc      >  2:981358/1‑141 (MQ=255)
                                                                                                                                        cAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATccc     <  2:339491/141‑1 (MQ=255)
                                                                                                                                         aaGgacaatatgtgcaagaagtacaacttcaatataaaaatcttggttaagcatttttataggcacaaatgtcttgccttttttattttaaaaaattttaaaatcaatacaccgaattttctgaaaaaggttgtaatgtat    <  1:206597‑M1/141‑139 (MQ=255)
                                                                                                                                          aGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGa   <  1:228669/141‑1 (MQ=255)
                                                                                                                                           ggacaatatgtgcaagaagtacaacttcaatataaaaatcttgcttaagcatttttataggcacaaatgtcttgccttttttattttaaaaaattttaaaatcaatacaccgaattttctgaaaaaggttgtaatgtattg  <  1:1305340‑M1/141‑141 (MQ=255)
                                                                                                                                           gACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGAt  <  3:217503/141‑1 (MQ=255)
                                                                                                                                           |                                                                                                                                            
ATTTTCGTTGTTTGCTTTACTTCTCTACCACGCTAAAGTGTAATATGATTAATAACTTATCATTTTTAGCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGAT  >  USA300TCH1516_ALE/2840724‑2841003

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.