New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE = 2840863190 (1.040)4 (0.020) 4/238 NT 2.1% intergenic (‑184/+121) hisZ/USA300HOU_RS14555 ATP phosphoribosyltransferase regulatory subunit/hypothetical protein
?USA300TCH1516_ALE = 2840932 197 (1.150)intergenic (‑253/+52) hisZ/USA300HOU_RS14555 ATP phosphoribosyltransferase regulatory subunit/hypothetical protein
Rejected: Frequency below/above cutoff threshold.

Only 100 of 226 total aligned reads displayed.

GCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGATTCCCTTTAAAGTAACGTCTATCTTGTTTACTATATACATTTTCAGGATTAAAAAACGGTTTGAGTTTAT  >  USA300TCH1516_ALE/2840792‑2841072
                                                                                                                                            |                                                                                                                                            
  aaTACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCct                                                                                                                                            >  2:1428231‑M2/1‑139 (MQ=255)
  aaTACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCct                                                                                                                                            <  2:829046‑M2/141‑3 (MQ=255)
  aaTACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCct                                                                                                                                            <  1:1546091‑M2/141‑3 (MQ=255)
   aTACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCctt                                                                                                                                           <  2:1615046‑M2/141‑4 (MQ=255)
     aCATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCcttgc                                                                                                                                         <  2:1193774‑M2/141‑6 (MQ=255)
        ttACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCcttgcctt                                                                                                                                      >  2:334846‑M2/1‑133 (MQ=255)
          aCAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTCCTTCTTGCACATATTGTCcttgccttct                                                                                                                                    <  1:723728‑M2/141‑11 (MQ=255)
               cTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGt                                                                                                                               <  2:1106959/141‑1 (MQ=255)
                tttttCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTa                                                                                                                              >  4:287558/1‑141 (MQ=255)
                tttttCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTa                                                                                                                              >  1:429451/1‑141 (MQ=255)
                 ttttCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTaa                                                                                                                             >  1:1237164/1‑141 (MQ=255)
                   ttCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTTCACATATTGTCCTTGCCTTATTATGTAAAg                                                                                                                           >  4:387708/1‑141 (MQ=255)
                    tCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGt                                                                                                                          >  2:884405/1‑141 (MQ=255)
                     cAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGtt                                                                                                                         <  2:690656/141‑1 (MQ=255)
                     cAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGtt                                                                                                                         <  2:1489625/141‑1 (MQ=255)
                     cAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGtt                                                                                                                         <  2:231801/141‑1 (MQ=255)
                     cAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGtt                                                                                                                         <  2:121975/141‑1 (MQ=255)
                     aaGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGtt                                                                                                                         <  2:1350619/140‑1 (MQ=255)
                       gAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTAt                                                                                                                       >  4:255670/1‑141 (MQ=255)
                       gAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTAt                                                                                                                       <  1:559735/141‑1 (MQ=255)
                        aaaaTTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTAtt                                                                                                                      <  3:457796/141‑1 (MQ=255)
                              cGGTGTATTGATTTTAAAATTTTTTTTTTTATAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATtttcttt                                                                                                                >  2:460465/1‑141 (MQ=255)
                               ggTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATtttctttc                                                                                                               >  2:1138984/1‑141 (MQ=255)
                               ggTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATtttctttc                                                                                                               >  2:1415781/1‑141 (MQ=255)
                                gtgtATTGATTTTAAGATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTttctttct                                                                                                              <  1:1372130/141‑1 (MQ=255)
                                          tttAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTttat                                                                                                    <  3:669577/141‑1 (MQ=255)
                                            tAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTttatta                                                                                                  >  3:533990/1‑141 (MQ=255)
                                             aaaaaattttAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTaa                                                                                                 >  1:1503326/7‑141 (MQ=255)
                                                  tttttAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTa                                                                                            <  2:389665/141‑1 (MQ=255)
                                                   ttttAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTaa                                                                                           >  2:1252633/1‑141 (MQ=255)
                                                   ttttAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTaa                                                                                           <  2:384115/141‑1 (MQ=255)
                                                    tttAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAAc                                                                                          <  1:925698/141‑1 (MQ=255)
                                                      taaaataaaaAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCcttgccttttttattttaaaaaattttaaaatcaatacaccgaattttctgaaa                                                                                        <  3:232667‑M2/141‑55 (MQ=255)
                                                       aaaataaaaAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTCATTTTAACTAt                                                                                       >  2:896603/1‑141 (MQ=255)
                                                        aaataaaaAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTAtt                                                                                      >  1:742787/1‑141 (MQ=255)
                                                         tttaaaaAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTAttc                                                                                     >  1:85333/3‑141 (MQ=255)
                                                          ataaaaAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTAttct                                                                                    >  2:862288/1‑141 (MQ=255)
                                                             aaaaaGGCAAGACATTTGTGCCTATAAAAATGCTTACCCAAGATTTTTATCTTGAAATTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCa                                                                                 <  1:487519/141‑1 (MQ=255)
                                                               aaaGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATa                                                                               >  1:385636/1‑141 (MQ=255)
                                                                 aGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAAt                                                                             >  1:623487/1‑141 (MQ=255)
                                                                  ggCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCcttgccttttttattttaaaaaattttaaaatcaatacaccgaattttctgaaaaaggttgtaatg                                                                            <  2:1392106‑M2/141‑67 (MQ=255)
                                                                  ggCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCAAATATCGCCCTTGCAATATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATc                                                                            >  1:410392/1‑141 (MQ=255)
                                                                  ggCAAGACATGTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATCATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTGCATaacc                                                                            >  4:151228/1‑139 (MQ=255)
                                                                   gCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATcc                                                                           >  2:1512706/1‑141 (MQ=255)
                                                                   gCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATcc                                                                           >  2:651049/1‑141 (MQ=255)
                                                                   gCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATcc                                                                           >  2:981358/1‑141 (MQ=255)
                                                                    cAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATccc                                                                          <  3:344500/141‑1 (MQ=255)
                                                                    cAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATccc                                                                          <  2:339491/141‑1 (MQ=255)
                                                                       gACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGAt                                                                       <  3:217503/141‑1 (MQ=255)
                                                                             tgtgCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCATTATTATGTAAAGTTATTTTCTTTCTCTCTTTTTATTCAATTTAACTCTTCTTCATAATCCTGATTCCCtt                                                                 >  3:565470/1‑141 (MQ=255)
                                                                                 ccTATAAAAATGCTTAACCAAGATTTTTATATTTAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGATTCCCTTTaaa                                                             <  4:246583/141‑1 (MQ=255)
                                                                                  cTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGATTCCCTTTAAAg                                                            <  2:1600639/141‑1 (MQ=255)
                                                                                   tataAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAAc                                                                                          >  2:28328/1‑110 (MQ=255)
                                                                                    ataAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGATTCCCTTTAAAGTa                                                          <  1:651049/141‑1 (MQ=255)
                                                                                       aaaaTGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCAt                                                                                <  4:505955/116‑1 (MQ=255)
                                                                                         aaTGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGATTCCCTTTAAAGTAACGTc                                                     <  2:1176701/141‑1 (MQ=255)
                                                                                         aaTGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGATTCCCTTTAAAGTAACGTc                                                     >  3:266516/1‑141 (MQ=255)
                                                                                          aTGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGATTCCCTTTAAAGTAACGTCt                                                    >  1:271760/1‑141 (MQ=255)
                                                                                            gCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGATTCCCTTTAAAGTAACGTCTAt                                                  >  2:1108329/1‑141 (MQ=255)
                                                                                            gCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGATTCCCTTTAAAGTAACGTCTAt                                                  >  1:1086253/1‑141 (MQ=255)
                                                                                            gCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGATTCCCTTTAAAGTAACGTCTAt                                                  <  4:456014/141‑1 (MQ=255)
                                                                                            gCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGATTCCCTTTAAAGTAACGTCTAt                                                  <  1:331379/141‑1 (MQ=255)
                                                                                             cTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGATTCCCTTTAAAGTAACGTCTATc                                                 <  4:356320/141‑1 (MQ=255)
                                                                                             cTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGATTCCCTTTAAAGTAACGTCTATc                                                 <  3:76859/141‑1 (MQ=255)
                                                                                             cTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGATTCCCTTTAAAGTAACGTCTATc                                                 <  4:75513/141‑1 (MQ=255)
                                                                                             cTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGATTCCCTTTAAAGTAACGTCTATc                                                 <  1:542288/141‑1 (MQ=255)
                                                                                               tAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGATTCCCTTTAAAGTAACGTCTATCtt                                               <  1:1138984/141‑1 (MQ=255)
                                                                                                  ccAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCcttgccttttttattttaaaaaattttaaaatcaatacaccgaattttctgaaaaaggttgtaatgtattgctaaaaatgataagttattaatcatat                                            >  1:1392106‑M2/1‑43 (MQ=255)
                                                                                                      gATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGATTCCCTTTAAAGTAACGTCTATCTTGTTTACt                                        >  1:24058/1‑141 (MQ=255)
                                                                                                            tataTTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGATTCCCTTTAAAGTAACGTCTATCTTGTTTACTATATAc                                  >  2:1557190/1‑141 (MQ=255)
                                                                                                            tataTTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGATTCCCTTTAAAGTAACGTCTATCTTGTTTACTATATAc                                  >  1:808740/1‑141 (MQ=255)
                                                                                                            tataTTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGATTCCCTTTAAAGTAACGTCTATCTTGTTTACTATATAc                                  >  1:998932/1‑141 (MQ=255)
                                                                                                            tataTTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGATTCCCTTTAAAGTAACGTCTATCTTGTTTACTATATAc                                  >  1:1036118/1‑141 (MQ=255)
                                                                                                             atatTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGATTCCCTTTAAAGTAACGTCTATCtt                                               >  3:592877/1‑127 (MQ=255)
                                                                                                             atatTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGATTCCCTTTAAAGTAACGTCTATCtt                                               <  4:592877/127‑1 (MQ=255)
                                                                                                                     gTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGATTCCCTTTAAAGTAACGTCTATCTTGTTTACTATATACATTTTCAgg                         <  3:145632/141‑1 (MQ=255)
                                                                                                                       tGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGATTCCCTTTAAAGTAACGTCTATCTTGTTTACTATATACATTTTCAGGAt                       >  1:140838/1‑141 (MQ=255)
                                                                                                                          aCTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGATTCCCTTTAAAGTAACGTCTATCTTGTTTACTATATACATTTTCAGGATTaa                    >  1:367560/1‑141 (MQ=255)
                                                                                                                           cttcttGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGATTCCCTTTAAAGTAACGTCTATCTTGTTTACTATATACATTTTCAGGATTaaa                   <  1:815253/141‑1 (MQ=255)
                                                                                                                           cttcttGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGATTCCCTTTAAAGTAACGTCTATCTTGTTTACTATATACATTTTCAGGATTaaa                   <  2:1196145/141‑1 (MQ=255)
                                                                                                                             tcttGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGATTCCCTTTAAAGTAACGTCTATCTTGTTTACTATATACATTTTTAGGATTaaaaa                 >  2:571506/1‑141 (MQ=255)
                                                                                                                              cttGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCTGATTCCCTTTAAAGTAACGTCTATCTTGTTTACTTTATACATTTTCAGGATTaaaaaa                >  4:655937/1‑141 (MQ=255)
                                                                                                                              cttGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGATTCCCTTTAAAGTAACGTCTATCTTGTTTACTATATACATTATAAGGATAaaaaaa                <  2:1461657/141‑1 (MQ=255)
                                                                                                                               ttGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGATTCCCTTTAAAGTAACGTCTATCTTGTTTACTATATACATTTTCAGGATTAAAacac               >  2:534736/1‑141 (MQ=255)
                                                                                                                                 gCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGATTCCCTTTAAAGTAACGTCTATCTTGTTTACTATATACATTTTCAGGATTAAAAAACgg             >  1:1614871/1‑141 (MQ=255)
                                                                                                                                 gCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGATTCCCTTTAAAGTAACGTCTATCTTGTTTACTATATACATTTTCAGGATTAAAAAACgg             >  3:396730/1‑141 (MQ=255)
                                                                                                                                 gCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGATTCCCTTTAAAGTAACGTCTATCTTGTTTACTATATACATTTTCAGGATTAAAAAACgg             >  1:1330282/1‑141 (MQ=255)
                                                                                                                                 gCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGATTCCCTTTAAAGTAACGTCTATCTTGTTTACTATATACATTTTCAGGATTAAAAAACgg             >  4:322219/1‑141 (MQ=255)
                                                                                                                                 gCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGATTCCCTTTAAAGTAACGTCTATCTTGTTTACTATATACATTTTCAGGATTAAAAAACgg             >  1:1111493/1‑141 (MQ=255)
                                                                                                                                  cacaTATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGATTCCCTTTAAAGTAACGTCTATCTTGTTTACTATATACATTTTCAGGATTAAAAAACGGt            >  3:294882/1‑141 (MQ=255)
                                                                                                                                   acaTATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGATTCCCTTTAAAGTAACGTCTATCTTGTTTACTATATACATTTTCAGGATTAAAAAACGGtt           <  1:1193774/141‑1 (MQ=255)
                                                                                                                                   acaTATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGATTCCCTTTAAAGTAACGTCTATCTTGTTTACTATATACATTTTCAGGATTAAAAAACGGtt           <  2:497219/141‑1 (MQ=255)
                                                                                                                                       atTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGATTCCCTTTAAAGTAACGTCTATCTTGTTTACTATATACATTTTCAGGATTAAAAAACGGTTTGAg       >  3:99727/1‑141 (MQ=255)
                                                                                                                                       atTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGATTCCCTTTAAAGTAACGTCTATCTTGTTTACTATATACATTTTCAGGATTAAAAAACGGTTTGAg       <  1:1197480/141‑1 (MQ=255)
                                                                                                                                       atTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGATTCCCTTTAAAGTAACGTCTATCTTGTTTACTATATACATTTTCAGGATTAAAAAACGGTTTGAg       <  2:1544085/141‑1 (MQ=255)
                                                                                                                                       atTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCAAAATCCCGATTCCCTTTAAAGTAACGTCTATCTTGTTTACTATATACATTTTCAGGATTAAAAAACGGTTTGAg       <  1:289775/141‑1 (MQ=255)
                                                                                                                                        ttGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGATTCCCTTTa                                                               <  1:862807/84‑1 (MQ=255)
                                                                                                                                         tGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGATTCCCTTTAAAGTAACGTCTATCTTGTTTACTATATACATTTTCAGGATTAAAAAACGGTTTGAGtt     <  1:100397/141‑1 (MQ=255)
                                                                                                                                          gTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGATTCCCTTTAAAGTAACGTCTATCTTGTTTACTATATACATTTTCAGGATTAAAAAACGGTTTGAGttt    <  3:572999/141‑1 (MQ=255)
                                                                                                                                           tCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGATTCCCTTTAAAGTAACGTCTATCTTGTTTACTATATACATTTTCAGGATTAAAAAACGGTTTGAGTTta   <  1:1622384/141‑1 (MQ=255)
                                                                                                                                            |                                                                                                                                            
GCAATACATTACAACCTTTTTCAGAAAATTCGGTGTATTGATTTTAAAATTTTTTAAAATAAAAAAGGCAAGACATTTGTGCCTATAAAAATGCTTAACCAAGATTTTTATATTGAAGTTGTACTTCTTGCACATATTGTCCTTGCCTTATTATGTAAAGTTATTTTCTTTCTATCTTTTTATTAAATTTAACTATTCTTCATAATCCCGATTCCCTTTAAAGTAACGTCTATCTTGTTTACTATATACATTTTCAGGATTAAAAAACGGTTTGAGTTTAT  >  USA300TCH1516_ALE/2840792‑2841072

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.