BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	955970 =	170 (0.930)	10 (0.060)	9/230	NT	6.4%	intergenic (‑192/+50)	glpQ_1/argH	Glycerophosphodiester phosphodiesterase/Argininosuccinate lyase
*	?	USA300TCH1516_ALE	956005 =	139 (0.840)	10 (0.060)	9/230	NT	6.4%	intergenic (‑227/+15)	glpQ_1/argH	Glycerophosphodiester phosphodiesterase/Argininosuccinate lyase

Only 100 of 204 total aligned reads displayed.

ACAAAAACCTGCTTGTGAAAACGCTTTACACATTTCTTTTACAATTTATAACATTTTTGTAATATAAATTTAAAAGAATTATCAAACATTTTAGGAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTAATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACATCAAGTTGTTGTTTGACCGATGATTGACCTGTTGAACCGTAACTTTGACGTCGTTTTAAACA  >  USA300TCH1516_ALE/955830‑956109

acAAAAACCTGCTTGTGAAAACGCTTTACACATTTCTTTTACAATTTATAACATTTTTGTAATATAAATTTAAAAGAATTATCAAACATTTTAGGAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAAt                                                                                                                                             <  4:640266/141‑1 (MQ=255)

 tgccgatatttacgattatttgcagcctgaaaattgtttaaaacgacgtcaaagttacggttcaacaggtcaatcatcggtcaaacaacaacttgatgttgctaaacaattactatcacaataaatacgttaatctaccta                                                                                                                                            <  2:692360‑M1/2‑1 (MQ=255)

  aaaaaCCTGCTTGTGAAAACGCTTTACACATTTCTTTTACAATTTATAACATTTTTGTAATATAAATTTAAAAGAATTATCAAACATTTTAGGAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATAc                                                                                                                                           <  3:621898/141‑1 (MQ=255)

   ccgatatttacgattatttgcagcctgaaaattgtttaaaacgacgtcaaagttacggttcaacaggtcaatcatcggtcaaacaacaacttgatgttgctaaacaattactatcacaataaatacgttaatctacctacc                                                                                                                                          >  2:1140896‑M1/138‑141 (MQ=255)

    aaaCCTGCTTGTGAAAACGCTTTACACATTTCTTTTACAATTTATAACATTTCTGTAATATAAATTTAAAAGAATTATCAAACATTTTAGGAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATAccc                                                                                                                                         <  2:1004006/141‑1 (MQ=255)

     gatatttacgattatttgcagcctgaaaattgtttaaaacgacgtcaaagttacggttcaacaggtcaatcatcggtcaaacaacaacttgatgttgctaaacaattactatcacaataaatacgttaatctaccTACCca                                                                                                                                        >  4:373817‑M1/136‑141 (MQ=255)

        cTGCTTGTGAAAACGCTTTACACATTTCTTTTACAATTTATAACATTTTTGTAATATAAATTTAAAAGAATTATCAAACATTTTAGGAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACaa                                                                                                                                     >  1:813435/1‑141 (MQ=255)

        atttacgattatttgcagcctgaaaattgtttaaaacgacgtcaaagttacggttcaacaggtcaatcatcggtcaaacaacaacttgatgttgctaaacaattactatcacaataaatacgttaatctaccTACCCACaa                                                                                                                                     <  2:1108861‑M1/9‑1 (MQ=255)

         tttacgattatttgcagcctgaaaattgtttaaaacgacgtcaaagttacggttcaacaggtcaatcatcggtcaaacaacaacttgatgttgctaaacaattactatcacaataaatactttaatctaccTACCCACAAt                                                                                                                                    <  2:361468‑M1/10‑1 (MQ=255)

          gCTTGTGAAAACGCTTTACACATTTCTTTTACAATTTATAACATTTTTGTAATATAAATTTAAAAGAATTATCAAACATTTTAGGAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATg                                                                                                                                   <  2:935858/141‑1 (MQ=255)

           tacgattatttgcagcctgaaaattgtttaaaacgacgtcaaagttacggttcaagaggtcaatcatcggtcaaacaacaacttgatgttgctaaacaattactatcacaataaatacgttaatctaccTACCCACAATGt                                                                                                                                  <  1:100108‑M1/12‑1 (MQ=255)

           cTTGTGAAAACGCTTTACACATTTCTTTTACAATTTATAACATTTTTGTAATATAAATTTAAAAGAATTATCAAACATTTTAGGAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGt                                                                                                                                  <  4:71434/141‑1 (MQ=255)

           cTTGTGAAAACGCTTTACACATTTCTTTTACAATTTATAACATTTTTGTAATATAAATTTAAAAGAATTATCAAACATTTTAGGAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGt                                                                                                                                  >  2:1377344/1‑141 (MQ=255)

           cTTGTAAAAACGCTTTACACATTTCTTTTACAATTTATAACATTTTTGTAATATAAATTTAAAAGAATTATCAAACATTTTAGGAATCATAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGt                                                                                                                                  <  4:438102/141‑1 (MQ=255)

            ttGTGAAAACGCTTTACACATTTCTTTTACAATTTATAACATTTTTGTAATATAAATTTAAAAGAATTATCAAACATTTTAGGAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTa                                                                                                                                 <  1:1625976/141‑1 (MQ=255)

              gtgAAAACGCTTTACACATTTCTTTTACAATTTATAACATTTTTGTAATATAAATTTAAAAGAATTATCAAACATTTTAGGAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTAAt                                                                                                                               <  2:1523621/141‑1 (MQ=255)

              gtgAAAACGCTTTACACATTTCTTTTACAATTTATAACATTTTTGTAATATAAATTTAAAAGAATTATCAAACATTTTAGGAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTAAt                                                                                                                               <  1:1607655/141‑1 (MQ=255)

                  aaaCGCTTTACACATTTCTTTTACAATTTATAACATTTTTGTAATATAAATTTAAAAGAATTATCAAACATTTTAGGAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTAATTTTa                                                                                                                           >  3:651510/1‑141 (MQ=255)

                   tttgcagcctgaaaattgtttaaaacgacgtcaaagttacggttcaacaggtcaatcatcggtcaaacaacaacttgatgttgctaaacaattactatcacaataaatacgttaatctaccTACCCACAATGTAATTTTaa                                                                                                                          >  2:1000614‑M1/122‑141 (MQ=255)

                     tgcagcctgaaaattgtttaaaacgacgtcaaagttacggttcaacaggtcaatcatcggtcaaacaacaacttgatgttgctaaacaattactatcacaataaatacgttaatctaccTACCCACAATGTAATTTTAATa                                                                                                                        >  1:128372‑M1/120‑141 (MQ=255)

                     cGCTTTACACATTTCTTTTACAATTTATAACATTTTTGTAATATAAATTTAAAAGAATTATCAAACATTTTAGGAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTAATTTTAATa                                                                                                                        >  2:241774/1‑141 (MQ=255)

                      gcagcctgaaaattgtttaaaacgacgtcaaagttacggttcaacaggtcaatcatcggtcaaacaacaacttgatgttgctaaacaattactatcacaataaatacgttaatctaccTACCCACAATGTAATTTTAATAg                                                                                                                       >  2:92491‑M1/119‑141 (MQ=255)

                      gCTTTACACATTTCTTTTACAATTTATAACATTTTTGTAATATAAATTTAAAAGAATTATCAAACATTTTAGGAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTAATTTTAATAg                                                                                                                       <  2:1610692/141‑1 (MQ=255)

                       cTTTACACATTTCTTTTACAATTTATAACATTTTTGTAATATAAATTTAAAAGAATTATCAAACATTTTAGGAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTAATTTTAATAGa                                                                                                                      >  2:210484/1‑141 (MQ=255)

                       cTTTACACATTTCTTTTACAATTTATAACATTTTTGTAATATAAATTTAAAAGAATTATCAAACATTTTAGGAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTAATTTTAATAGa                                                                                                                      >  1:1164232/1‑141 (MQ=255)

                       cTTTACACATTTCTTTTACAATTTATAACATTTTTGTAATATAAATTTAAAAGAATTATCAAACATTTTAGGAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTAATTTTAATAGa                                                                                                                      >  1:1110877/1‑141 (MQ=255)

                          tACACATTTCTTTTACAATTTATAACATTTTTGTAATATAAATTTAAAAGAATTATCAAACATTTTAGGAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTAATTTTAATAGACAt                                                                                                                   >  1:1442164/1‑141 (MQ=255)

                          tACACATTTCTTTTACAATTTATAACATTTTTGTAATATAAATTTAAAAGAATTATCAAACATTTTAGGAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTAATTTTAATAGACAt                                                                                                                   >  2:724749/1‑141 (MQ=255)

                          cctgaaaattgtttaaaacgacgtcaaagttacggttcaacaggtcaatcatcggtcaaacaacaacttgatgttgctaaacaattactatcacaataaatacgttaatctaccTACCCACAATGTAATTTTAATAGACAt                                                                                                                   >  1:606571‑M1/115‑141 (MQ=255)

                            cacaTTTATTTTACAAATTATAACATTTTTGTAATATAAATTTAAAAGAATTATCAACCATTTTAGGAATCTTAAAACTGTGATGTTCAACAAGACGAAGAGAGCATTAAAAAACCCACAATGTAATTTTAATAAACATtg                                                                                                                 >  4:335248/1‑141 (MQ=255)

                                tttCTTTTACAATTTATAACATTTTTGTAATATAAATTTAAAAGAATTATCAAACATTTTAGGAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTAATTTTAATAGACATTGTggg                                                                                                             <  1:247663/141‑1 (MQ=255)

                                aattgtttaaaacgacgtcaaagttacggttcaacaggtcaatcatcggtcaaacaacaacttgatgttgctaaacaattactatcacaataaatacgttaatctaccTACCCACAATGt                                                                                                                                  >  4:460690‑M1/109‑120 (MQ=255)

                                  tCTTTTACAATTTATAACATTTTTGTAATATAAATTTAAAAGAATTATCAAACATTTTAGGAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTAATTTTAATAGACATTGTGggta                                                                                                           >  1:1492225/1‑141 (MQ=255)

                                   attttATAATTTATAACATTTTTGTAATATAAATTTAAAAGAAGTATCAAACATGTTAGGAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTAATTTTAATAGACATTGTGggtag                                                                                                          <  4:137776/140‑1 (MQ=255)

                                    ttttACAATTTATAACATTTTTGTAATATAAATTTAAAAGAATTATCAAACATTTTAGGAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTAATTTTAATAGACATTGTGggtagg                                                                                                         <  1:1425951/141‑1 (MQ=255)

                                    ttttACAATTTATAACATTTTTGTAATATAAATTTAAAAGAATTATCAAACATTTTAGGAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTAATTTTAATAGACATTGTGggtagg                                                                                                         >  1:1447948/1‑141 (MQ=255)

                                    ttttACAATTTATAACATTTTTGTAATATAAATTTAAAAGAATTATCAAACATTTTAGGAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTAATTTTAATAGACATTGTGggtagg                                                                                                         <  3:174884/141‑1 (MQ=255)

                                        aCAATTTATAACATTTTTGTAATATAAATTTAAAAGAATTATCAAACATTTTAGGAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTAATTTTAATAGACATTGTGGGTAGGTAGa                                                                                                     >  1:1141585/1‑141 (MQ=255)

                                        aCAATTTATAACATTTTTGTAATATAAATTTAAAAGAATTATCAAACATTTTAGGAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTAATTTTAATAGACATTGTGGGTAGGTAGa                                                                                                     >  2:1268856/1‑141 (MQ=255)

                                        aCAATGTATAACATTTTTGTAATATAAATTTAATAGAATTATCAAACATTTTAGGAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTAATTTTAATATACATTTTTGGTAGTTAGa                                                                                                     >  4:169338/1‑141 (MQ=255)

                                           aTTTATAACATTTTTGTAATATCAATTTAAGAGATTTATTAAACATTTTAGGAATCTTAAAAATGAGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCTCAATGTAATTTGAATATACAATGTGGGTAGGTAGATTa                                                                                                  >  4:533200/1‑141 (MQ=255)

                                             ttATAACATTTTTGTAATATAAATTTAAAAGAATTATCAAACATTTTAGGAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTAATTTTAATAGACATTGTGGGTAGGTAGATTAAc                                                                                                <  3:419009/141‑1 (MQ=255)

                                             ttATAACATTTTTGTAATATAAATTTAAAAGAATTATCAAACATTTTAGGAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTAATTTTAATAGACATTGTGGGTAGGTAGATTAAc                                                                                                >  2:307191/1‑141 (MQ=255)

                                             ttATAACATTTTTGTAATATAAATTTAAAAGAATTATCAAACATTTTAGGAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTAATTTTAATAGACATTGTGGGTAGGTAGATTAAc                                                                                                <  1:54823/141‑1 (MQ=255)

                                             ttATAACATTTTTGTAATATAAATTTAAAAGAATTATCAAACATTTTAGGAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTAATTTTAATAGACATTGTGGGTAGGTAGATTAAc                                                                                                <  1:1055561/141‑1 (MQ=255)

                                             ttATAACATTTTTGTAATATAAAATTAAAAGAATTATCAAACATTTAAGGAATCTTAAAAATGTGATGTTAAACAAGACGAAGAGACCATTAAAATACGCACAATGTAATTTTAATAGAAATCATGGGTAGGTAGATTAAc                                                                                                >  4:224307/1‑141 (MQ=255)

                                              tataACATTTTTGTAATATAAATTTAAAAGAATTATCAAACATTTTAGGAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTAATTTTAATAGACATTGTGGGTAGGTAGATTAACg                                                                                               <  3:45543/141‑1 (MQ=255)

                                                 aaCATTTTTGTAATATAAATTTAAAAGAATTATCAAACATTTTAGGAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTAATTTTAATAGACATTGTGGGTAGGTAGATTAACGtat                                                                                            >  1:284326/1‑141 (MQ=255)

                                                 aaCATTTTTGTAATATAAATTTAAAAGAATTATCAAACATTTTAGGAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTAATTTTAATAGACATTGTGGGTAGGTAGATTAACGtat                                                                                            >  1:1207643/1‑141 (MQ=255)

                                                  aCATTTTTGTAATATAAATTTAAAAGAATTATCAAACATTTTAGGAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTAATTTTAATAGACATTGTGGGTAGGTAGATTAACGtatt                                                                                           <  4:91237/141‑1 (MQ=255)

                                                   cATTTTTGTAATATAAATTTAAAAGAATTATCAAACATTTTAGGAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTAATTTTAATAGACATTGTGGGTAGGTAGATTAACGtattt                                                                                          >  2:539723/1‑141 (MQ=255)

                                                        ttGTAATATAAATTTAAAAGAATTATCAAACATTTTAGGAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTAATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATtgt                                                                                     >  3:586536/1‑141 (MQ=255)

                                                            aaTATAAATTTAAAAGAATTATCAAACATTTTAGGAATCTTAAAAATGAGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTAATTTTAATAGACATTGTGGGTGGGTAGATTAACGTATTTCTTGTGAtc                                                                                 >  2:1311478/1‑140 (MQ=255)

                                                              tataAATTTAAAAGAATTATCAAACATTTTAGGAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTAATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGt                                                                               >  1:1251423/1‑141 (MQ=255)

                                                               ataAATTTAAAAGAATTATCAAACATTTTAGGAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTAATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTa                                                                              <  1:1536496/141‑1 (MQ=255)

                                                                taAATTTAAAAGAATTATCAAACATTTTAGGAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTAATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTaa                                                                             <  1:995465/141‑1 (MQ=255)

                                                                taAATTTAAAAGAATTATCAAACATTTTAGGAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTAATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTaa                                                                             <  4:493237/141‑1 (MQ=255)

                                                                 aaaTTTAAAAGAATTATCAAACATTTTAGGAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTAATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAAt                                                                            >  3:694512/1‑141 (MQ=255)

                                                                  aaTTTAAAAGAATTATCAAACATTTTAGGAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTAATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAAtt                                                                           <  1:624704/141‑1 (MQ=255)

                                                                  aaTTTAAAAGAATTATCAAACATTTTAGGAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTAATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAAtg                                                                           <  1:1571490/141‑2 (MQ=255)

                                                                    tttAAAAGAATTATCAAACATTTTAGGAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTAATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGt                                                                         <  2:1457501/141‑1 (MQ=255)

                                                                      tAAAAGAATTATCAAACATTTTAGGAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTAATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGttt                                                                       <  2:1200222/141‑1 (MQ=255)

                                                                       aaaaGAATTATCAAACATTTTAGGAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTAATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTa                                                                      >  2:47299/1‑141 (MQ=255)

                                                                        aaaGAATTATCAAACATTTTAGGAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTAATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAg                                                                     >  2:86715/1‑141 (MQ=255)

                                                                         aaGAATTATCACACATCACAGGAAGCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATGCCAACAATGTAATGTTAATAGAGATCTTGGGTAGGTAGAACAACGTACTTATTGTGATAGTAATTGGTTAGc                                                                    >  4:511459/1‑141 (MQ=255)

                                                                           gAATTATCAAACATTTTAGGAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTAATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCaa                                                                  <  4:175889/141‑1 (MQ=255)

                                                                            aaTTATCAAACATTTTAGGAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTAATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAAc                                                                 >  4:270410/1‑141 (MQ=255)

                                                                              ttATCAAAAATTTTAGGAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGAATTAAAATACCCACAATGTAATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACAt                                                               <  4:672516/141‑1 (MQ=255)

                                                                               tATCAAACATTTTAGGAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTAATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACATc                                                              <  2:682826/141‑1 (MQ=255)

                                                                               tATCAAACATTTTAGGAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTAATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACATc                                                              <  3:146246/141‑1 (MQ=255)

                                                                                 tCAAACATTTTAGGAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTAATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACATCaa                                                            >  1:198153/1‑141 (MQ=255)

                                                                                   aaaCATTTTAGGAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTAATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACATCAAgt                                                          <  1:118630/141‑1 (MQ=255)

                                                                                             ggAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTAATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACATCAAGTTGTTGTTTGa                                                <  4:253504/141‑1 (MQ=255)

                                                                                             ggAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTAATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACATCAAGTTGTTGTTTGa                                                <  1:373401/141‑1 (MQ=255)

                                                                                              gAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTAATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACATCAAGTTGTTGTTTGAc                                               <  2:139064/141‑1 (MQ=255)

                                                                                                aTCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTAATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACATCAAGTTGTTGTTTGACCg                                             <  2:1132463/141‑1 (MQ=255)

                                                                                                   ttAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTAATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACATCAAGTTGTTGTTTGACCgatg                                          <  2:612052/141‑1 (MQ=255)

                                                                                                    tAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTAATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACATCAAGTTGTTGTTTGACCgatga                                         >  1:331473/1‑141 (MQ=255)

                                                                                                    tAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTAATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACATCAAGTTGTTGTTTGACCgatga                                         <  1:417385/141‑1 (MQ=255)

                                                                                                     aaaaaTGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTAATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACATCAAGTTGTTGTTTGACCgatgat                                        <  1:554455/141‑1 (MQ=255)

                                                                                                     aaaaaTGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTAATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACATCAAGTTGTTGTTTGACCgatgat                                        <  2:1072073/141‑1 (MQ=255)

                                                                                                       aaaTGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTAATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACATCAAGTTGTTGTTTGACCGATGATTg                                      <  2:512871/141‑1 (MQ=255)

                                                                                                            tgATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTAATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACATCAAGTTGTTGTTTGACCGATGATTGACCTg                                 >  3:401547/1‑141 (MQ=255)

                                                                                                            tgATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTAATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACATCAAGTTGTTGTTTGACCGATGATTGACCTg                                 >  2:1496477/1‑141 (MQ=255)

                                                                                                            tgATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTAATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACATCAAGTTGTTGTTTGACCGATGATTGACCTg                                 <  2:1221605/141‑1 (MQ=255)

                                                                                                                gTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTAATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACATCAAGTTGTTGTTTGACCGATGATTGACCTGTTGa                             <  3:495391/141‑1 (MQ=255)

                                                                                                                  tCAACAAGACAACGAGAGCATTAAAATACCCACAATGTAATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACATCAAGTTGTTGTTTGACCGATGATTGACCTGTTGGAc                           <  2:902499/141‑1 (MQ=255)

                                                                                                                   caacaaGACGAAGAGAGCATTAAAATACCCACAATGTAATTTTAATAGACATTGTTGGTAGGTAGATGAACGTATTTATTGTGATAGTAATTGTTTAGCAACATCAAGTTGTTGTTTGACCGATGATTGACCTGTTGAAcc                          <  2:411752/141‑1 (MQ=255)

                                                                                                                   caacaaGACGAAGAGAGCATTAAAATACCCACAATGTAATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACATCAAGTTGTTGTTTGACCGATGATTGACCTGTTGAAcc                          >  2:898887/1‑141 (MQ=255)

                                                                                                                     acaaGACGAAGAGAGCATTAAAATACCCACAATGTAATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACATCAAGTTGTTGTTTGACCGATGATTGACCTGTTGAACCGt                        >  2:1033290/1‑141 (MQ=255)

                                                                                                                       aaGACGAAGAGAGCATTAAAATACCCACAATGTAATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACATCAAGTTGTTGTTTGACCGATGATTGACCTGTTGAACCGTaa                      <  1:1299087/141‑1 (MQ=255)

                                                                                                                        aGACGAAGAGAGCATTAAAATACCCACAATGTAATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACATCAAGTTGTTGTTTGACCGATGATTGACCTGTTGAACCGTAAc                     <  2:163234/141‑1 (MQ=255)

                                                                                                                          taaatacgttaatctaccTACCCACAATGTAATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACATCAAGTTGTTGTTTGACCGATGATTGACCTGTTGAACCGTAACtt                   <  2:1551512‑M1/123‑1 (MQ=255)

                                                                                                                          aCGAAGAGAGCATTAAAATACCCACAATGTAATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACATCAAGTTGTTGTTTGACCGATGATTGACCTGTTGAACCGTAACtt                   >  2:1409343/1‑141 (MQ=255)

                                                                                                                                 gagCATTAAAATACCCACAATGTAATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACATCAAGTTGTTGTTTGACCGATGATTGACCTGTTGAACCGTAACTTTGAcgtc            <  1:631590/141‑1 (MQ=255)

                                                                                                                                  agCATTAAAATACCCACAATGTAATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACATCAAGTTGTTGTTTGACCGATGATTGACCTGTTGAACCGTAACTTTGAcgtcg           >  2:201785/1‑141 (MQ=255)

                                                                                                                                   gCATTAAAATACCCACAATGTAATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACATCAAGTTGTTGTTTGACCGATGATTGACCTGTTGAACCGTAACTTTGAcgtcgt          <  3:197778/141‑1 (MQ=255)

                                                                                                                                     aTTAAAATACCCACAATGTAATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACATCAAGTTGTTGTTTGACCGATGATTGACCTGTTGAACCGTAACTTTGACGTCGttt        >  2:801579/1‑141 (MQ=255)

                                                                                                                                          aaTACCCACAATGTAATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACATCAAGTTGTTGTTTGACCGATGATTGACCTGTTGAACCGTAACTTTGACGTCGTTTTAAAc   <  1:1037944/141‑1 (MQ=255)

                                                                                                                                           aTACCCACAATGTAATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACATCAAGTTGTTGTTTGACCGATGATTGACCTGTTGAACCGTAACTTTGACGTCGTTTTAAACa  <  1:957870/141‑1 (MQ=255)

ACAAAAACCTGCTTGTGAAAACGCTTTACACATTTCTTTTACAATTTATAACATTTTTGTAATATAAATTTAAAAGAATTATCAAACATTTTAGGAATCTTAAAAATGTGATGTTCAACAAGACGAAGAGAGCATTAAAATACCCACAATGTAATTTTAATAGACATTGTGGGTAGGTAGATTAACGTATTTATTGTGATAGTAATTGTTTAGCAACATCAAGTTGTTGTTTGACCGATGATTGACCTGTTGAACCGTAACTTTGACGTCGTTTTAAACA  >  USA300TCH1516_ALE/955830‑956109

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.