| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2793464 = | 238 (1.300) | 5 (0.030) | 3/234 | NT | 2.4% | coding (2179/2982 nt) | yueB | ESX secretion system protein YueB |
| ? | USA300TCH1516_ALE | 2793513 = | 179 (1.060) | coding (2130/2982 nt) | yueB | ESX secretion system protein YueB | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 278 total aligned reads displayed.
TGCAATAATACCCGCTTGCTTTTTCAAATCATTCTTAAGTGTGTCGATTAATTTGTCGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGCTGTTCT > USA300TCH1516_ALE/2793324‑2793603 | gtgatgtagctaaagctgctaactttgtgcgcaatgacttaccacagttataacatctattaacgaatgcgacagcaagtgtgaataaaaatttaccaacgttattaaatggttatgatcaagcggtaggattactaaata > 1:1649759‑M1/141‑141 (MQ=255)gtgatgtagctaaagctgctaactttgtgcgcaatgacttaccacagttagaacagcgattaactaatgcgacagcaagtgtgaataaaaatttaccaacgttattaaatggttatgatcaagcggtaggattactaaata > 2:687900‑M1/141‑141 (MQ=255) cAATAATACCCGCTTGCTTTTTCAAATCATTCTTAAGTGTGTCGATTAATTTGTCGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGaaa < 1:1202833/141‑1 (MQ=255) taataCCCGCTTGCTTTTTCAAATCATTCTTAAGTGTGTCGATTAATTTGTCGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAAt < 4:711462/141‑1 (MQ=255) taataCCCGCTTGCTTTTTCAAATCATTCTTAAGTGTGTCGATTAATTTGTCGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAAt > 3:556801/1‑141 (MQ=255) tagctaaagctgctaactttgtgcgcaatgacttaccacagttagaacagcgattaactaatgcgacagcaagtgtgaataaaaatttaccaacgttattaaatggttatgatcaagcggtaggattactaaatAAAAATc > 2:1466498‑M1/135‑141 (MQ=255) ataCCCGCTTGCTTTTTCAAATCATTCTTAAGTGTGTCGATTAATTTGTCGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCa > 2:848031/1‑141 (MQ=255) ataCCCGCTTGCTTTTTCAAATCATTCTTAAGTGTGTCGATTAATTTGTCGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCa > 1:600023/1‑141 (MQ=255) taCCCGCTTGCTTTTCCAAATCATTCTTATGTGTGTCGATTAATTTGTCGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACAGCAGGCAATTTATTTTGAGAAAAATCAg < 1:24229/141‑1 (MQ=255) ctaaagctgctaactttgtgcgcaatgacttaccacagttagaacagcgattaactaatgcgacagcaagtgtgaataaaaatttaccaacgttattaaatggttatgatcaagcggtaggattactaaatAAAAATCAGc < 4:565100‑M1/10‑1 (MQ=255) aCCCGCTTGCTTTTTCAAATCATTCTTAAGTGTGTCGATTAATTTGTCGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGc < 1:1003913/141‑1 (MQ=255) aCCCGCTTGCTTTTTCAAATCATTCTTAAGTGTGTCGATTAATTTGTCGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGc < 2:502851/141‑1 (MQ=255) aCCCGCTTGCTTTTTCAAATCATTCTTAAGTGTGTCGATTAATTTGTCGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGc < 2:913076/141‑1 (MQ=255) gcttgcttTTTCAAATCATTCTTAAGTGTGTCGATTAATTTGTCGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTaaa < 2:1493237/141‑1 (MQ=255) gcttgcttTTTCAAATCATTCTTAAGTGTGTCGATTAATTTGTCGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTaaa < 1:854845/141‑1 (MQ=255) tgcttTTTCAAATCATTCTTAAGTGTGTCGATTAATTTGTCGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATATTGAGAAAAATCAGCTAAATCt < 2:624116/141‑1 (MQ=255) ttttCAAATCATTCTTAAGTGTGTCGATTAATTTGTCGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATa < 1:1488920/141‑1 (MQ=255) tttCAAATCATTCTTAAGTGTGTCGATTAATTTGTCGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATaa < 1:702541/141‑1 (MQ=255) cAAATCATTCTTAAGTGTGTCGATTAATTTGTCGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGc < 1:351081/141‑1 (MQ=255) aaaTCATTCTTAAGTGTGTCGATTAATTTGTCGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGcc < 4:395681/141‑1 (MQ=255) aaTCATTCTTAAGTGTGTCGATTAATTTGTCGACTGCATCATCTATGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCt < 4:616184/141‑1 (MQ=255) aaTCATTCTTAAGTGTGTCGATTAACTTGTCGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCt < 1:1324437/141‑1 (MQ=255) aTCATTCTTAAGTGTGTCGATTAATTTGTCGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCtt > 1:403707/1‑141 (MQ=255) tCATTCTTAAGTGTGTCGATTAATTTGTCGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCttt > 2:1204535/1‑141 (MQ=255) aTTCTTAAGTGTGTCGATTAATTTGTCGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGCGCTAAATCAGCTAAAGCTGATAAAGCCttttt < 2:419889/141‑1 (MQ=255) aTTCTTAAGTGTGTCGATTAATTTGTCGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCttttt < 1:536105/141‑1 (MQ=255) tCTTAAGTGTGTCGATTAATTTGTCGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATTTGATAAAGCCTTTTTCg > 2:1326209/1‑141 (MQ=255) cTTAAGTGTGTCGATTAATTTGTCGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGc > 1:805802/1‑141 (MQ=255) ttAAGTGTGTCGATTAATTTGTCGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTTTTTTTTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTctct > 2:662573/1‑141 (MQ=255) ttAAGTGTGTCGATTAATTTGTCGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCt > 2:92524/1‑141 (MQ=255) tAAGTGTGTCGATTAATTTGTCGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCtt > 1:770154/1‑141 (MQ=255) aGTGTGTCGATTAATTTGTCGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTtgt < 2:785725/141‑1 (MQ=255) tCGATTAATTTGTCGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGa > 1:627263/1‑141 (MQ=255) cGATTAATTTGTCGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGGGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGAt < 2:972053/141‑1 (MQ=255) cGATTAATTTGTCGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGAt < 4:556801/141‑1 (MQ=255) cGATTAATTTGTCGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGAt < 2:1341708/141‑1 (MQ=255) cGATTAATTTGTCGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGAt < 1:1170371/141‑1 (MQ=255) cGATTAATTTGTCGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTACACTCTTTTTCCACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGAt < 3:242719/141‑1 (MQ=255) gATTAATTTGTCGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGAtt < 1:512272/141‑1 (MQ=255) gATTAATTTGTCGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGAtt < 3:454791/141‑1 (MQ=255) ttAATTTGTCGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGAtttt < 4:343951/141‑1 (MQ=255) tAATTTGTCGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGAttttt > 1:1080037/1‑141 (MQ=255) aTTTGTCGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTtttat < 1:1332677/141‑1 (MQ=255) aTTTGTCGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTtttat < 1:1130337/141‑1 (MQ=255) ttGTCGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCATTTCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGCTTtttattt > 4:278464/1‑141 (MQ=255) ttGTCGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTTGCTTTTGTCTGATTtttattt > 4:63264/1‑141 (MQ=255) tGTCGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTtttattta < 2:700185/141‑1 (MQ=255) gTCGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTTTTTTTTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAg > 2:823643/1‑141 (MQ=255) aCTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAAt < 2:298982/141‑1 (MQ=255) aCTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCAGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAAt > 2:1581648/1‑141 (MQ=255) cTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTACTc > 4:190274/1‑141 (MQ=255) cTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATc > 1:172269/1‑141 (MQ=255) tGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATcc > 2:1233767/1‑141 (MQ=255) tGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATcc < 1:295204/141‑1 (MQ=255) catcatCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTa < 2:714947/141‑1 (MQ=255) catcatCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTa < 4:133140/141‑1 (MQ=255) atcatcTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTAc < 2:319137/141‑1 (MQ=255) atcatcTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTAc < 1:1448537/141‑1 (MQ=255) catcTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCg < 2:476851/141‑1 (MQ=255) tcTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCt < 3:272357/141‑1 (MQ=255) tttGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTg > 3:394821/1‑141 (MQ=255) ttGTCTAATTTCTTGAATATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGa < 2:797162/141‑1 (MQ=255) gTCTAATTTCTTGAAAATTTTCTTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATc < 2:629524/141‑1 (MQ=255) cagcaagtgtgaataaaaatttaccaacgttattaaatggttatgatcaagcggtaggattactaaatAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGAtttt > 2:582819‑M1/69‑116 (MQ=255) aaTTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATaa > 2:207057/1‑141 (MQ=255) aaTTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATaa > 1:1253242/1‑141 (MQ=255) cTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTTTTTTTTTTTCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCTTTTTTCGCTTGTGGCTGTTTTTTATTTAGTACTCCTACCGCTTGATCATAACCAtt > 4:482268/1‑141 (MQ=255) cTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCAtt < 3:189614/141‑1 (MQ=255) ttGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGc > 1:1463881/1‑83 (MQ=255) ttGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTTTTTTGTTTCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCAttt > 4:371989/1‑141 (MQ=255) ttGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATc < 1:695146/131‑1 (MQ=255) ttGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCAttt > 1:1558712/1‑141 (MQ=255) tGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCATCTAAATCTGATAATGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTta < 1:1613124/141‑1 (MQ=255) tGAAAATTTTATTCGCTTTTTCCAATTCTTTCTCAATAGCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTta < 1:738879/141‑1 (MQ=255) aaaTTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTtaata > 1:336518/1‑141 (MQ=255) aTTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTgg < 1:984035/141‑1 (MQ=255) cGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTaa > 1:1621919/1‑141 (MQ=255) tttttCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAAttt < 4:438394/141‑1 (MQ=255) ttttCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAAtttt < 3:35467/141‑1 (MQ=255) ttCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTa > 1:1026883/1‑141 (MQ=255) aTCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTcac > 3:60403/1‑141 (MQ=255) tttCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTg < 1:114947/141‑1 (MQ=255) tCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATc > 2:1458567/1‑98 (MQ=255) tCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCt > 3:153638/1‑141 (MQ=255) tCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCt < 2:544738/141‑1 (MQ=255) aaCATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGt > 2:1629014/1‑141 (MQ=255) aaCATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGt < 4:273906/141‑1 (MQ=255) aCATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTc > 1:1049694/1‑141 (MQ=255) aCATCAGGCAAATTATTTTGAGAAAAATCTGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTc > 2:186046/1‑141 (MQ=255) gCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAg < 1:502568/141‑1 (MQ=255) gCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAg < 1:1513395/141‑1 (MQ=255) atttatttTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTTTTTTTTTGTTGATATTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTTTTCACACTTTCTGTCGCATTATTTa > 2:1422956/1‑141 (MQ=255) tttatttTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTaa < 2:127787/141‑1 (MQ=255) ttatttTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTAGTAAATTTTTATTCACCCTTGCTGTCGCATTAGTTAAt < 3:637801/141‑1 (MQ=255) attgTGAGGAAAAACAGCCAAATCTGATAAAGCCTTTTTCGTTTGTGCCTTGTTTATATTTAATACTCCTACCGCTCGATCATTACCCTTTAAAAACGTTGGTAGCTTCTTATTCACACTTGCTGTCACATTCTTTATTCg > 2:1032258/1‑141 (MQ=255) ttttGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGc < 3:481552/141‑1 (MQ=255) tttGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGCt > 2:1137859/1‑141 (MQ=255) tGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGCTGt < 1:375058/141‑1 (MQ=255) gagaAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCAGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGCTGtt < 2:282474/141‑1 (MQ=255) gaAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGCTGTTCt < 2:734999/141‑1 (MQ=255) | TGCAATAATACCCGCTTGCTTTTTCAAATCATTCTTAAGTGTGTCGATTAATTTGTCGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGCTGTTCT > USA300TCH1516_ALE/2793324‑2793603 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |