New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 2793464 =238 (1.300)5 (0.030) 3/234 NT 2.4% coding (2179/2982 nt) yueB ESX secretion system protein YueB
?USA300TCH1516_ALE 2793513 = 179 (1.060)coding (2130/2982 nt) yueB ESX secretion system protein YueB
Rejected: Frequency below/above cutoff threshold.

Only 100 of 237 total aligned reads displayed.

AATTTGTCGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGCTGTTCTAACTGTGGTAAGTCATTGCGCACAAAGTTAGCAGCTTTAGCTACATCACT  >  USA300TCH1516_ALE/2793373‑2793653
                                                                                                                                            |                                                                                                                                            
agaacagcgattaactaatgcgacagcaagtgtgaataaaaatttaccaacgttattaaatggttatgatcaagcggtaggattactaaatAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTttta                                                                                                                                              >  2:1107673‑M1/92‑141 (MQ=255)
 aTTTGTCGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTtttat                                                                                                                                             <  1:1130337/141‑1 (MQ=255)
 aTTTGTCGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTtttat                                                                                                                                             <  2:437243/141‑1 (MQ=255)
   ttGTCGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTTGCTTTTGTCTGATTtttattt                                                                                                                                           >  4:63264/1‑141 (MQ=255)
    tGTCGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTtttattta                                                                                                                                          <  2:700185/141‑1 (MQ=255)
     ttCGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCTCTTGTGGCTGATTTTTATTTAg                                                                                                                                         >  2:1498168/2‑141 (MQ=255)
        gACTGCATCATGTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCTAATCTTTTTCAACTTCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGTTAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTaa                                                                                                                                      <  2:605662/141‑1 (MQ=255)
        gACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTaa                                                                                                                                      <  1:939665/141‑1 (MQ=255)
           tGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATcc                                                                                                                                   <  1:295204/141‑1 (MQ=255)
           tGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATcc                                                                                                                                   >  2:1233767/1‑141 (MQ=255)
             catcatCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTa                                                                                                                                 <  2:714947/141‑1 (MQ=255)
             catcatCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTa                                                                                                                                 <  4:133140/141‑1 (MQ=255)
              atcatcTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTAc                                                                                                                                <  1:1448537/141‑1 (MQ=255)
              atcatcTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTAc                                                                                                                                <  2:319137/141‑1 (MQ=255)
                catcTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCg                                                                                                                              <  2:476851/141‑1 (MQ=255)
                      tGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGAt                                                                                                                        >  1:503919/1‑141 (MQ=255)
                       gTCTAATTTCTTGAAAATTTTCTTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATc                                                                                                                       <  2:629524/141‑1 (MQ=255)
                       gTCTAATTTCTTGAAAATTTTATTCGCTTTTTTTTTTTTTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATc                                                                                                                       >  4:304403/1‑141 (MQ=255)
                       gTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCATATTTTTTTCAACATCAGTCTATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTTTTTATTTATCCTTCCTCtttttt                                                                                                                       >  4:454698/1‑137 (MQ=255)
                           aaTTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTTTTTTTTTTTTGATTTTTATTTAGTAATCCTACTGCTTGATCATaa                                                                                                                   >  2:278341/1‑141 (MQ=255)
                           aaTTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATaa                                                                                                                   >  2:207057/1‑141 (MQ=255)
                            aTTTCTTGAAGATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTCATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCTCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAAc                                                                                                                  <  2:1319272/141‑1 (MQ=255)
                                cTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTTTTTTTTTTTCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCTTTTTTCGCTTGTGGCTGTTTTTTATTTAGTACTCCTACCGCTTGATCATAACCAtt                                                                                                              >  4:482268/1‑141 (MQ=255)
                                 ttGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTTTTTTGTTTCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCAttt                                                                                                             >  4:371989/1‑141 (MQ=255)
                                 ttGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATc                                                                                                                       >  2:695146/1‑131 (MQ=255)
                                 ttGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATc                                                                                                                       <  1:695146/131‑1 (MQ=255)
                                 ttGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCAttt                                                                                                             <  1:1636909/141‑1 (MQ=255)
                                 ttGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCAttt                                                                                                             >  3:464398/1‑141 (MQ=255)
                                 ttGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCAttt                                                                                                             >  1:1558934/1‑141 (MQ=255)
                                 ttGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCAttt                                                                                                             >  2:163535/1‑141 (MQ=255)
                                  tGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCATCTAAATCTGATAATGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTta                                                                                                            <  1:1613124/141‑1 (MQ=255)
                                    aaaaTTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTtaat                                                                                                          >  3:374000/1‑141 (MQ=255)
                                     aaaTTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTtaata                                                                                                         >  1:336355/1‑141 (MQ=255)
                                            aTTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTgg                                                                                                  <  2:913251/141‑1 (MQ=255)
                                            aTTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTgg                                                                                                  <  2:1409610/141‑1 (MQ=255)
                                             ttCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGt                                                                                                 <  1:1044900/141‑1 (MQ=255)
                                               cGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTaa                                                                                               >  1:227732/1‑141 (MQ=255)
                                                gCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTaaa                                                                                              <  2:796137/141‑1 (MQ=255)
                                                gCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTaaa                                                                                              <  3:601993/141‑1 (MQ=255)
                                                 cTTTTTTCAATTTTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAAt                                                                                             >  2:1267633/1‑141 (MQ=255)
                                                 cTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAAt                                                                                             <  4:562641/141‑1 (MQ=255)
                                                 cTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAAt                                                                                             >  1:1063162/1‑141 (MQ=255)
                                                      ttCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTa                                                                                        <  3:585322/141‑1 (MQ=255)
                                                      ttCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTa                                                                                        >  1:1026883/1‑141 (MQ=255)
                                                       tCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTAt                                                                                       >  3:271436/1‑141 (MQ=255)
                                                         aaaTCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTc                                                                                     >  1:751247/1‑141 (MQ=255)
                                                          aaTCTTTGTCAACATCAGGCAATTTATTTTTATAAAAATCATCTAAATCTTAGAAATCCGTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTca                                                                                    <  1:1396298/141‑1 (MQ=255)
                                                           aTCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTcac                                                                                   >  3:631711/1‑141 (MQ=255)
                                                           aTCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTcac                                                                                   <  2:193408/141‑1 (MQ=255)
                                                                tttCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTg                                                                              <  1:114947/141‑1 (MQ=255)
                                                                tttCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTg                                                                              >  2:1031210/1‑141 (MQ=255)
                                                                  tCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATc                                                                                                                       >  2:1458567/1‑98 (MQ=255)
                                                                  tCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCt                                                                            <  3:41593/141‑1 (MQ=255)
                                                                     aCATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTc                                                                         <  2:842830/141‑1 (MQ=255)
                                                                     aCATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACAGCTTGATAATAACCATTTATTAACGTTGGTAAATTGTTATGCACACTTGCTGTc                                                                         >  1:738702/1‑141 (MQ=255)
                                                                            gCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAg                                                                  >  1:117228/1‑141 (MQ=255)
                                                                             aaaTTCATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGt                                                                 <  4:576154/140‑1 (MQ=255)
                                                                               atttatttTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTa                                                               <  1:1235651/141‑1 (MQ=255)
                                                                                   atttTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCTTTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCg                                                           >  2:290649/1‑141 (MQ=255)
                                                                                   atttTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCg                                                           >  4:238567/1‑141 (MQ=255)
                                                                                     tttGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGCt                                                         >  2:1137859/1‑141 (MQ=255)
                                                                                       tGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGCTGt                                                       <  1:375085/141‑1 (MQ=255)
                                                                                        gagaAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGCTGtt                                                      <  2:387526/141‑1 (MQ=255)
                                                                                         agaAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGCTGTTc                                                     <  1:1550771/141‑1 (MQ=255)
                                                                                         agaAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGCTGTTc                                                     <  2:548093/141‑1 (MQ=255)
                                                                                         agaAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGCTGTTc                                                     <  2:82622/141‑1 (MQ=255)
                                                                                          taaaaatcagccacaagcgaaaaaggctttatcagatttagctgatttttTTTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGCTGTTCt                                                    >  2:955038‑M2/51‑141 (MQ=255)
                                                                                          taaaaatcagccacaagcgaaaaaggctttatcagatttagctgatttttATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGCTGTTCt                                                    >  1:1103789‑M2/51‑141 (MQ=255)
                                                                                            aaaatcagccacaagcgaaaaaggctttatcagatttagctgatttttATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTg                                                                           <  1:582819‑M2/68‑1 (MQ=255)
                                                                                            AAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGCTGTTCTaa                                                  >  1:1288725‑M1/1‑141 (MQ=255)
                                                                                            AAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCACTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGCTGTTCTaa                                                  >  1:790547‑M1/1‑141 (MQ=255)
                                                                                             AAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGCTGTTCTAAc                                                 >  1:1211430‑M1/1‑141 (MQ=255)
                                                                                                  AGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGCTGTTCTAACTGTgg                                            >  2:756240‑M1/1‑141 (MQ=255)
                                                                                                  AGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGCTGTTCTAACTGTgg                                            >  3:501247‑M1/1‑141 (MQ=255)
                                                                                                      aaaTCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGCTGTTCTAACTGTGGTAAg                                        <  2:1000645/141‑1 (MQ=255)
                                                                                                       aaTCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGCTGTTCTAACTGTGGTAAGt                                       <  2:1202444/141‑1 (MQ=255)
                                                                                                              tAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGCTGTTCTAACTGTGGTAAGTCATTgcg                                <  3:332000/141‑1 (MQ=255)
                                                                                                              tAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGCTGTTCTAACTGTGGTAAGTCATTgcg                                >  1:190884/1‑141 (MQ=255)
                                                                                                               aaaGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGCTGTTCTAACTGTGGTAAGTCATTgcgc                               <  4:42694/141‑1 (MQ=255)
                                                                                                               aaaGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGCTGTTCTAACTGTGGTAAGTCATTgcgc                               >  1:1618103/1‑141 (MQ=255)
                                                                                                               aaaGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTGGCTGTCGCATTAGTTAATCGCTGTTCTAACTGTGGTAAGTCATTgcgc                               <  2:661989/141‑1 (MQ=255)
                                                                                                                  gCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTGATTCACACTTGCTGTCGCATTAGTTAATCGCTGTTCTAACTGTGGTAAGTCATTGCGcaca                            <  4:657304/141‑1 (MQ=255)
                                                                                                                   ccTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGCTGTTCTAACTGTGGTAAGTCATTGCGCACaa                           <  2:1545726/141‑1 (MQ=255)
                                                                                                                    cTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGCTGTTCTAACTGTGGTAAGTCATTGCGCACaaa                          <  1:1477602/141‑1 (MQ=255)
                                                                                                                    cTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGCTGTTCTAACTGTGGTAAGTCATTGCGCACaaa                          >  2:5389/1‑141 (MQ=255)
                                                                                                                    cTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGCTGTTCTAACTGTGGTAAGTCATTGCGCACaaa                          >  2:1348771/1‑141 (MQ=255)
                                                                                                                       tttCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCCCACTTGCTGTCGCATTAGTTAATCGCTGTTCTAACTGTGGTAAGTCATTGCGCACAAAGtt                       >  1:1274966/1‑141 (MQ=255)
                                                                                                                         tCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGCTGTTCTAACTGTGGTAAGTCATTGCGCACAAAGTTag                     >  1:52921/1‑141 (MQ=255)
                                                                                                                          cGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGCTGTTCTAACTGTGGTAAGTCATTGCGCACAAAGTTagc                    <  2:306497/141‑1 (MQ=255)
                                                                                                                                  gctgatttttATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGCTGTTCTAACTGTGGTAAGTCATTGCGCACAAAGTTAGCAGCTTTAg            <  3:214775‑M2/131‑1 (MQ=255)
                                                                                                                                   ctgatttttATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGCTGTTCTAACTGTGGTAAGTCATTGCGCACAAAGTTAGCAGCTTTAGc           <  2:487233‑M2/132‑1 (MQ=255)
                                                                                                                                    tgatttttATTTATTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGCTGTTCTAACTGTGGTAAGTCATTGCGCACAAAGTTAGCAGCTTTAGCt          >  4:597107‑M2/9‑141 (MQ=255)
                                                                                                                                     gatttttATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGCTGTTCTAACTGTGGTAAGTCATTGCGCACAAAGTTAGCAGCTTTAGCTa         >  2:1466498‑M2/8‑141 (MQ=255)
                                                                                                                                      atttttATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGCTGTTCTAACTGTGGTAAGTCATTGCGCACAAAGTTAGCAGCTTTAGCTAc        <  4:275368‑M2/135‑1 (MQ=255)
                                                                                                                                        ttttATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGCTGTTCTAACTGTGGTAAGTCATTGCGCACAAAGTTAGCAGCTTTAGCTACAt      >  3:182947‑M2/5‑141 (MQ=255)
                                                                                                                                         tttATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGCTGTTCTAACTGTGGTAAGTCATTGCGCACAAAGTTAGCAGCTTTAGCTACATc     >  1:358612‑M2/4‑141 (MQ=255)
                                                                                                                                          ttATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAATTTTTTATTCACACTTGCTGTCGCATTAGTTAATCGCTGTTCTAACTGTGGTAAGTCATTGCGCACAAAGTTAGCAGCTTTAGCTACATCa    >  2:1592495‑M2/3‑141 (MQ=255)
                                                                                                                                           tATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGCTGTTCTAACTGTGGTAAGTCATTGCGCACAAAGTTAGCAGCTTTAGCTACATCAc   <  1:643275‑M2/140‑1 (MQ=255)
                                                                                                                                            atttaGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGCTGTTCTAACTGTGGTAGATAAGAGCGCACAAAGTGAGCAGCTTTAGCTACAtcact  >  3:134279/1‑141 (MQ=255)
                                                                                                                                            atttaGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGCTGTTCTAACTGTGGTAAGTCATTGCGCACAAAGTTAGCAGCTTTAGCTACAtcact  >  2:801099/1‑141 (MQ=255)
                                                                                                                                            |                                                                                                                                            
AATTTGTCGACTGCATCATCTTTGTCTAATTTCTTGAAAATTTTATTCGCTTTTTTCAAATCTTTTTCAACATCAGGCAATTTATTTTGAGAAAAATCAGCTAAATCTGATAAAGCCTTTTTCGCTTGTGGCTGATTTTTATTTAGTAATCCTACCGCTTGATCATAACCATTTAATAACGTTGGTAAATTTTTATTCACACTTGCTGTCGCATTAGTTAATCGCTGTTCTAACTGTGGTAAGTCATTGCGCACAAAGTTAGCAGCTTTAGCTACATCACT  >  USA300TCH1516_ALE/2793373‑2793653

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.