BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1026972 =	183 (1.000)	9 (0.050)	7/242	NT	5.1%	intergenic (+13/‑221)	USA300HOU_RS05060/USA300HOU_RS05065	hypothetical protein/Serine protease HtrA‑like protein
*	?	USA300TCH1516_ALE	1027002 =	162 (0.930)	9 (0.050)	7/242	NT	5.1%	intergenic (+43/‑191)	USA300HOU_RS05060/USA300HOU_RS05065	hypothetical protein/Serine protease HtrA‑like protein

Only 100 of 204 total aligned reads displayed.

CGTATTATGGCAATCTATTTTCTGGACAGTACTAATTGGATTAGTAATTATCGGTTGGTTAGGTTCAGTTGTTAAAAATAAAAAATCGCATAAATAATTGATGTGAAGCGGACAATCTTAATTTAGTTTAAGGTTGTCCTTTTTCATTTAATTGAGTGATTTATGAAAAATGGATTTTGAAGAATGTGAATCAAAAGATGCGATATAGTATTAAGAAAATGTGCCTTTTATATTTAGCATTTTTTCAATAGAAATTATATAGATTTTAAAGCAAATTAGG  >  USA300TCH1516_ALE/1026863‑1027142

cGTATTATGGCAATCTATTTTCTGGACAGTACTAATTGGATTAGTAATTATCGGTTGGTTAGGTTCAGTTGTTAAAAATAAAAAATCGCATAAATAATTGATGTGAAGCGGACAATCTTAATTTAGTTTAAGGTTGTCCtt                                                                                                                                             >  2:737451/1‑141 (MQ=255)

 gTATTATGGCAATCTATTTTCTGGACAGTACTAATTGGATTAGTAATTATCGGTTGGTTAGGCTCAGTTGTTAAAAATAAAAAATCGCATAAATAATTGATGTGAAGCGGACAATCTTAATTTAGTTTAAGGTTGTCCttt                                                                                                                                            <  1:989684/141‑1 (MQ=255)

   attatNGCAATCTATTTTCTGGACAGTACTAATTGGATTAGTAATTATCGGTTGGTTAGGTTCAGTTGTTAAAAATAAAAAATCGCATAAATAATTGATGTGAAGCGNACAATCTTAATTTAGTTTAAGGTTGTCCttttt                                                                                                                                          <  1:60725/141‑1 (MQ=255)

   attatGGCAATCTATTTTCTGGACAGTACTAATTGGATTAGTAATTATCGGTTGGTTAGGTTCAGTTGTTAAAAATAAAAAATCGCATAAATAATTGATGTGAGGCGGACAATCTTAATTTAGTTTAAGGTTGTCCttttt                                                                                                                                          <  1:1200088/141‑1 (MQ=255)

   attatGGCAATCTATTTTCTGGACAGTACTAATTGGATTAGTAATTATCGGTTGGTTAGGTTCAGTTGTTAAAAATAAAAAATCGCAGAAATAATTGATGTGAAGCGGACAATCTTAATTTAGTTTAAGGTTGTCCttttt                                                                                                                                          <  1:450557/141‑1 (MQ=255)

     tatGGCAATCTATTTTCTGGACAGTACTAATTGGATTAGTAATTATCGGTTGGTTAGGTTCAGTTGTTAAAAATAAAAAATCGCATAAATAATTGATGTGAAGCGGACAATCTTAATTTAGTTTAAGGTTGTCCTTTTTCa                                                                                                                                        <  2:1132664/141‑1 (MQ=255)

              cTATTTTCTGGACAGTACTAATTGGATTAGTAATTATCGGTTGGTTAGGTTCAGTTGTTAAAAATAAAAAATCGCATAAATAATTGATGTGAAGCGGACAATCTTAATTTAGTTTAAGGTTGTCCTTTTTCATTTAATTGa                                                                                                                               <  1:267832/141‑1 (MQ=255)

              atagtttCTGGACAGTACTTATTGGATTAGTAATTATCGGTTGGTTAGGTTCAGTTGTTAAAAATAAAAAATCGCATAAATAATTGATGTGAAGCGGACAATCTTAATTTAGTTTAAGGTTGTCCTTTTTCATTTAATTGa                                                                                                                               <  4:23089/137‑1 (MQ=255)

                aTTTTCTGGACAGTACTAATTGGATTAGTAATTATCGGTTGGTTAGGTTCAGTTGTTAAAAATAAAAAATCGCATAAATAATTGATGTGAAGCGGACAATCTTAATTTAGTTTAAGGTTGTCCTTTTTCATTTAATTGAGt                                                                                                                             >  2:143362/1‑141 (MQ=255)

                   ttCTGGACAGTACTAATTGGATTAGTAATTATCGGTTGGTTGGGTTCAGTTGTTAAAAATAAAAAATCGCATAAATAATTGATGTGAAGCGGACAATCTTAATTTAGTTTAAGGTTGTCCTTTTTCATTTAATTGAGTGAt                                                                                                                          >  3:516319/1‑141 (MQ=255)

                     cTGGACAGTACTAATTGGATTAGTAATTATCGGTTGGTTAGGTTCAGTTGTTAAAAATAAAAAATCGCATAAATAATTGATGTGAAGCGGACAATCTTAATTTAGTTTAAGGTTGTCCTTTTTCATTTAATTGAGTGAttt                                                                                                                        <  1:272637/141‑1 (MQ=255)

                     cTGGACAGTACTAATTGGATTAGTAAGTATCGGTTGGTTAGGTTCAGTTGTTAAAAATAAAAGATCGCATAAATAATTGATGTGAAGCGGACAATCTTAATTTAGTTTAAGGTTGTCCTTTTTCATTTAATTGAGTGAttt                                                                                                                        <  2:874448/141‑1 (MQ=255)

                       ggACAGTACTAATTGGATTAGTAATTATCGGTTGGTTAGGTTCAGTTGTTAAAAATAAAAAATCGCATAAATAATTGATGTGAAGCGGACAATCTTAATTTAGTTTAAGGTTGTCCTTTTTCATTTAATTGAGTGATTTAt                                                                                                                      >  3:613060/1‑141 (MQ=255)

                       ggACAGTACTAATTGGATTAGTAATTATCGGTTGGTTAGGTTCAGTTGTTAAAAATAAAAAATCGCATAAATAATTGATGTGAAGCGGACAATCTTAATTTAGTTTAAGGTTGTCCTTTTTCATTTAATTGAGTGATTTAt                                                                                                                      >  4:149051/1‑141 (MQ=255)

                        gcacattttcttaatactatatcgcatcttttgattcacattcttcaaaatccatttttcataaatcactcaattaaatgaaaaaggacaatcttaatttagtttaaggttgtccTTTTTCATTTAATTGAGTGATTTATg                                                                                                                     <  1:338732‑M2/26‑1 (MQ=255)

                          cAGTACTAATTGGATTAGTAATTATCGGTTGGTTAGGTTCAGTTGTTAAAAATAAAAAATCGCATAAATAATTGATGTGAAGCGGACAATCTTAATTTAGTTTAAGGTTGTCCTTTTTCATTTAATTGAGTGATTTATGaa                                                                                                                   >  3:35006/1‑141 (MQ=255)

                                   taatactatatcgcatcttttgattcacattcttcaaaatccatttttcataaatcactcaattaaatgaaaaaggacaatcttaatttagtttaaggttgtccTTTTTCATTTAAt                                                                                                                                  >  3:374226‑M2/105‑117 (MQ=255)

                                     ggATTAGTAATTATCGGTTGGTTAGGTTCAGTTGTTAAAAATAAAAAATCGCATAAATAATTGATGTGAAGCGGACAATCTTAATTTAGTTTAAGGTTGTCCTTTTTCATTTAATTGAGTGATTTATGAAAAATGGAtttt                                                                                                        <  2:77601/141‑1 (MQ=255)

                                     ggATTAGTAATTATCGGTTGGTTAGGTTCAGTTGTTAAAAATAAAAAATCGCATAAATAATTGATGTGAAGCGGACAATCTTAATTTAGTTTAAGGTTGTCCTTTTTCATTTAATTGAGTGATTTATGAAAAATGGAtttt                                                                                                        <  4:435849/141‑1 (MQ=255)

                                      gATTAGTAATTATCGGTTGGTTAGGTTCAGTTGTTAAAAATAAAAAATCGCATAAATAATTGATGTGAAGCGGACAATCTTAATTTAGTTTAAGGTTGTCCTTTTTCATTTAATTGAGTGATTTATGAAAAATGGAtttt                                                                                                        >  2:45723/1‑140 (MQ=255)

                                         tAGTAATTATCGGTTGGTTAGGTTCAGTTGTTAAAAATAAAAAATCGCATAAATAATTGATGTGAAGCGGACAATCTTAATTTAGTTTAAGGTTGTCCTTTTTCATTTAATTGAGTGATTTATGAAAAATGGATTTTgaag                                                                                                    <  2:168070/141‑1 (MQ=255)

                                           gTAATTATCGGTTGGTTAGGTTCAGTTGTTAAAAATAAAAAATCGCATAAATAATTGATGTGAAGCGGACAATCTTAATTTAGTTTAAGGTTGTCCTTTTTTTTTTTTTTTTGTGATTTATGAAAAATGGATTTTgaagat                                                                                                  >  4:62605/1‑140 (MQ=255)

                                           gTAATTATCGGTTGGTTAGGTTCAGTTGTTAAAAATAAAAAATCGCATAAATAATTGATGTGAAGCGGACAATCTTAATTTAGTTTAAGGTTGTCCTTTTTCATTTAATTGAGTGATTTATGAAAAATGGATTTTgaagaa                                                                                                  >  1:776023/1‑141 (MQ=255)

                                            tAATTATCGGCTGGTTAGGTTCAGTTGTTAAAAATAAAAAATCGCATAAATAATTGATGTGAAGCGGACAATCTTAATCTAGTTTAAGGTTGTCCTTTTTCATTTTCTTTAGTGATTTATGAAAAATGTTTTTTGAAGAAt                                                                                                 >  4:662729/1‑141 (MQ=255)

                                             aaTTATCGGTTGGTTAGGTTCAGTTGTTAAAAAAAAAAAATCGCATAAATAATTGATGTGAAGCGGACAATCTTAATTTAGTTTAAGGTTGTCCTTTTTCATTTAATTGAGTGATTTATGAAAAATGGATTTTGAAGAAtg                                                                                                <  2:80612/141‑1 (MQ=255)

                                               ttATCGGTTGGTTAGGTTCAGTTGTTAAAAATAAAAAATCGCATAAATAATTGATGTGAAGCGGACAATCTTAATTTAGTTTAAGGTTGTCCTTTTTCATTTAATTGAGTGATTTATGAAAAATGGATTTTGAAGAAtgtg                                                                                              <  1:428298/141‑1 (MQ=255)

                                               ttATCGGTTGGTTAGGTTCAGTTGTTAAAAATAAAAAATCGCATAAATAATTGATGTGAAGCGGACAATCTTAATTTAGTTTAAGGTTGTCCTTTTTCATTTAATTGAGTGATTTATGAAAAATGGATTTTGAAGAAtgtg                                                                                              >  3:128797/1‑141 (MQ=255)

                                               ttATCGGTTGGTTAGGTTCAGTTGTTAAAAATAAAAAATCGCATAAATAATTGATGTGAAGCGGACAATCTTAATTTAGTTTAAGGTTGTCCTTTTTCATTTAATTGAGTGATTTATGAAAAATGGATTTTGAAGAAtgtg                                                                                              <  1:76016/141‑1 (MQ=255)

                                               ttATCGGTTGGTTAGGTTCAGTTGTTAAAAATAAAAAATCGCATAAATAATTGATGTGAAGCGGACAATCTTAATTTAGTTTAAGGTTGTCCTTTTTCATTTAATTGAGTGATTTATGAAAAATGGATTTTGAAGAAtgtg                                                                                              >  4:119871/1‑141 (MQ=255)

                                               ttATCGGTTGGTTAGGTTCAGTTGTTAAAAATAAAAAATCGCATAAATAATTGATGTGAAGCGGACAATCTTAATTTAGTTTAAGGTTGTCCTTTTTCATTTAATTGAGTGATTTATGAAAAATGGATTTTGAAGAAtgtg                                                                                              >  1:1286698/1‑141 (MQ=255)

                                               ttATCGGTTGGTTAGGTTCAGTTGTTAAAAATAAAAAATCGCATAAATAATTGATGTGAAGCGGACAATCTTAATTTAGTTTAAGGTTGTCCTTTTTCATTTAATTGAGTGATTTATGAAAAATGGATTTTGAAGAAtgtg                                                                                              <  1:1214334/141‑1 (MQ=255)

                                                 aTCGGTTGGTTAGGTTCAGTTGTTAAAAATAAAAAATCGCATAAATAATTGATGTGAAGCGGACAATCTTAATTTAGTTTAAGGTTGTCCTTTTTCATTTAATAGAGTGAATTAAGAAAAATGGATTTTGAAGAATGTGaa                                                                                            >  2:1314570/1‑141 (MQ=255)

                                                  tCGGTTGGTTAGGTTCAGTTGTTAAAAATAAAAAATCGCATAAATAATTGATGTGAAGCGGACAATCTTAATTTAGTTTAAGGTTGTCCTTTTTCATTTAATTGAGTGATTTATGAAAAATGGATTTTGAAGAATGTGAAt                                                                                           <  2:1477332/141‑1 (MQ=255)

                                                  tCGGTTGGTTAGGTTCAGTTGTTAAAAATAAAAAATCGCATAAATAATTGATGTGAAGCGGACAATCTTAATATAGTTTAAGGTTGTCCTATTTTATTTAATTGAGTGATTTATGAAAAATGGATTTTGAAGAATGTGAAt                                                                                           >  4:608703/1‑141 (MQ=255)

                                                   cGGTTGGTTAGGTTCAGTTGTTAAAAATAAAAAATCGCATAAATAATTGATGTGAAGCGGACAATCTTAATTTAGTTTAAGGTTGTCCTTTTTCATTTAATTGAGTGATTTATGAAAAATGGATTTTGAAGAATGTGAATc                                                                                          >  2:5475/1‑141 (MQ=255)

                                                    ggtgggttAGATTCAGTTGTTAAAAATAAAAAATCGCATAAATAATTGATGTGAAGCGGACAATCTTAATTTAGTTTAAGGTTGTCCTTTTTCATTTAATTGAGTGATTTATGAAAAATGGATTTTGAAGAATGTGAATCa                                                                                         <  2:1630586/141‑1 (MQ=255)

                                                     gttggttAGGTTCAGTTGTTAAAAATAAAAAATCGCATAAATAATTGATGTGAAGCGGACAATCTTAATTTAGTTTAAGGTTGTCCTTTTTCATTTAATTGAGTGATTTATGAAAAATGGATTTTGAAGAATGTGAATCaa                                                                                        <  3:170590/141‑1 (MQ=255)

                                                     gttggttAGGTTCAGTTGTTAAAAATAAAAAATCGCATAAATAATTGATGTGAAGCGGACAATCTTAATTTAGTTTAAGGTTGTCCTTTTTCATTTAATTGAGTGATTTATGAAAAATGGATTTTGAAGAATGTGAATCaa                                                                                        >  2:369743/1‑141 (MQ=255)

                                                     gttggttAGGTTCAGTTGTTAAAAATAAAAAATCGCATAAATAATTGATGTGAAGCGGACAATCTTAATTTAGTTTAAGGTTGTCCTTTTTCATTTAATTGAGTGATTTATGAAAAATGGATTTTGAAGAATGTGAATCaa                                                                                        <  2:1003435/141‑1 (MQ=255)

                                                         gttAGGTTCAATTGTTAAAAATAAAAAATCGCATAAATAATTGATGTGAAGCGGACAATCTTAATTTAGTTTAAGGTTGTCCTTTTTCATTTAATTGAGTGATTTATGAAAAATGGATTTTGAAGAATGTGAATCAAAAGa                                                                                    <  1:1599354/141‑1 (MQ=255)

                                                             ctatCAGTTGTTAAAAATAAAAAATCGCATAAATAATTGATGTGAAGCGGACAATCTTAATTTAGTTTAAGGTTGTCCTTTTTCATTTAATTGAGTGATTTATGAAAAATGGATTTTGAAGAATGTGAATCAAAAGATGCg                                                                                <  3:415172/138‑1 (MQ=255)

                                                              gTTCAGTTGTTAAAACTCGTGAATCGCATAAATAATTGATGTGAAGCGGACAATCTTAATTTAGTTTAAGGTTGTCCTTTTTCATTTAATTGAGTGATTTATGAAAAATGGATTTTGAAGAATGTGAATCAAAAGATGCGa                                                                               <  3:180669/141‑1 (MQ=255)

                                                              gTTCAGTTGTTAAAAATAAAAAATCGCATAAATAATTGATGTGAAGCGGACAATCTTAATTTAGTTTAAGGTTGTCCTTTTTCATTTAATTGAGTGATTTATGAAAAATGGATTTTGAAGAATGTGAATCAAAAGATGCGa                                                                               >  1:964288/1‑141 (MQ=255)

                                                              gTTCAGTTGTTAAAAATAAAAAATCGCATAAATAATTGATGTGAAGCGGACAATCTTAATTTAGTTTAAGGTTGTCCTTTTTCATTTAATTGAGTGATTTATGAAAAATGGATTTTGAAGAATGTGAATCAAAAGATGCGa                                                                               <  1:1023844/141‑1 (MQ=255)

                                                               ttCAGTTGTTAAAAATAAAAAATCGCATAAATAATTGATGTGAAGCGGACAATCTTAATTTAGTTTAAGGTTGTCCTTTTTCATTTAATTGAGTGATTTATGAAAAATGGATTTTGAAGAATGTGAATCAAAAGATGCGat                                                                              >  1:113045/1‑141 (MQ=255)

                                                                  aGTTGTTAAAAATAAAAAATCGCATAAATGGTTGATGTGAAGCGGACAAGCTTAATTTAGTTGAAGGTTGTCCTTTTTCATTTAATTGAGTGATTTATGAAAAATGGAGTTTGAAGATTGTGAAGCAGAAGTTGCGAtata                                                                           >  2:157582/1‑141 (MQ=255)

                                                                   gttgttAAAAATAAAAAATCGCATAAATAATTGATGTGAAGCGGACAATCTTAATTTAGTTTAAGGTTGTCCTTTTTCATTTAATTGAGTGATTTATGAAAAATGGATTTTGAAGAATGTGAATCAAAAGATGCGATATAg                                                                          >  4:476372/1‑141 (MQ=255)

                                                                   gttgttAAAAATAAAAAATCGCATAAATAATTGATGTGAAGCGGACAATCTTAATTTAGTTTAAGGTTGTCCTTTTTCATTTAATTGAGTGATTTATGAAAAATGGATTTTGAAGAATGTGAATCAAAAGATGCGATATAg                                                                          >  1:1380655/1‑141 (MQ=255)

                                                                      gttAAAAATAAAAAATCGCATAAATAATTGATGTGAAGCGGACAATCTTAATTTAGTTTAAGGTTGTCCTTTTTCATTTAATTGAGTGATTTATGAAAAATGGATTTTGAAGAATGTGAATCAAAAGATGCGATATAGTAt                                                                       <  4:23883/141‑1 (MQ=255)

                                                                       ttAAAAATAAAAAATCGCATAAATAATTGATGTGAAGCGGACAATCTTAATTTAGTTTAAGGTTGTCCTTTTTCATTTAATTTTATGATTTATGAAACATAGATTTTGAAGTATGTGAATCAAAAGATGCGATATTGTAtt                                                                      >  2:930627/1‑141 (MQ=255)

                                                                        taaaaataaaaaAGCGCATAAATAATTGATGTGAAGCGGACAATCTTAATTTAGTTTAAGGTTGTCCTTTTTCATTTAATTGAGTGATTTATGAAAAATGGATTTTGAAGAATGTGAATCAAAAGATGCGATATAGTATTa                                                                     <  2:1302998/141‑1 (MQ=255)

                                                                         aaaaataaaaaATCGCATAAATAATTGATGTGAAGCGGACAATCTTAATTTAGTTTAAGGTTGTCCTTTTTCATTTAATTGAGTGATTTATGAAAAATGGATTTTGAAGAATGTGAATCAAAAGATGCGATATAGTATTaa                                                                    <  1:1274863/141‑1 (MQ=255)

                                                                          aaaataaaaaATCGCATAAATAATTTATGTGAAGCGGACAATCTTAATTTAGTTTAAGGTTGTCCTTTTTCATTTAATTGAGTGATTTATGAAAAATGGATTTTGAAGAATGTGAATCAAAAGATGCGATATAGTATTAAg                                                                   <  2:529326/141‑1 (MQ=255)

                                                                           aaataaaaaATCGCATAAATAATTGATGTGAAGCGGACAATCTTAATTTAGTTTAAGGTTGTCCTTTTTCATTTAATTGAAAAAAAAAAGAAAAATGGATTTTGAAGAATGTGAATCAAAAGATGCGATATAGTATTAAGa                                                                  <  2:975897/141‑1 (MQ=255)

                                                                            aataaaaaATCGCATAAATAATTGATGTGAAGCGGACAATCTTAATTTAGTTTAAGGTTGTCCTTTTTCATTTAATTGAGTGATTTATGAAAAATGGATTTTGAAGAATGTGAATCAAAAGATGCGATATAGTATTAAGaa                                                                 >  1:1484704/1‑141 (MQ=255)

                                                                             ataaaaaATCGCATAAATAATTGATGTGAAGCGGACAATCTTAATTTAGTTTAAGGTTGTCCTTTTTCATTTAATTGAGTGATTTATGAAAAATGGATTTTGAAGAATGTGAATCAAAAGATGCGATATAGTATTAAGaaa                                                                <  1:490690/141‑1 (MQ=255)

                                                                             ataaaaaATCGCATAAATAATTGATGTGAAGCGGACAATCTTAATTTAGTTTAAGGTTGTCCTTTTTCATTTAATTGAGTGATTTATGAAAAATGGATTTTGAAGAATGTGAATCAAAAGATGCGATATAGTATTAAGaaa                                                                <  4:300051/141‑1 (MQ=255)

                                                                             ataaaaaATCGCATAAATAATTGATGTGAAGCGGACAATCTTAATTTAGTTAAAGGTTGTTCTTTGGCACTGAATTGAGGGACGGAGGAAAAAGGGATTTTGAAGAATGTGAATCAAAAGATGCGATATAGGATTAAGaaa                                                                >  1:328289/1‑141 (MQ=255)

                                                                                 aaaaTCGCATAAATAATTGATGTGAAGCGGACAATCTTAATTTAGTTTAAGGTTGTCCTTTTTCATTTAATTGAGTGATTTATGAAAAATGGATTTTGAAGAATGTGAATCAAAAGATGCGATATAGTATTAAGAAAAtgt                                                            <  4:412346/141‑1 (MQ=255)

                                                                                   aaTCGCATAAATAATTGATGTGAAGCGGACAATCTTAATTTAGTTTAAGGTTGTCCTTTTTCATTTAATTGAGTGATTTATGAAAAATGGATTTTGAAGAATGTGAATCAAAAGATGCGATATAGTATTAAGAAAATGTGc                                                          >  1:1080974/1‑141 (MQ=255)

                                                                                     tCGCATAAATAATTGATGTGAAGCGGACAATCTTAATTTAGTTTAAGGTTGTCCTTTTTCATTTAATTGAGTGATTTATGAAAAATGGATTTTGAAGAATGTGAATCAAAAGATGCGATATAGTATTAAGAAAATGTGCCt                                                        >  1:1137474/1‑141 (MQ=255)

                                                                                     tCGCATAAATAATTGATGTGAAGCGGACAATCTTAATTTAGTTTAAGGTTGTCCTTTTTCATTTAATTGAGTGATTTATGAAAAATGGATTTTGAAGAATGTGAATCAAAAGATGCGATATAGTATTAAGAAAATGTGCCt                                                        >  2:1019302/1‑141 (MQ=255)

                                                                                      cGCATAAATAATTGATGTGAAGCGGACAATCTTAATTTAGTTTAAGGTTGTCCTTTTTCATTTAATTGAGTGATTTATGAAAAATGGATTTTGAAGAATGTGAATCAAAAGATGCGATATAGTATTAAGAAAATGTGCCtt                                                       >  3:326888/1‑141 (MQ=255)

                                                                                       gCATAAATAATTGATGTGAAGCGGACAATCTTAATTTAGTTTAAGGTTGTCCTTTTTCATTTAATTGAGTGATTTATGAAAAATGGATTTTGAAGAATGTGAATCAAAAGATGCGATATAGTATTAAGAAAATGTGCCttt                                                      <  2:205568/141‑1 (MQ=255)

                                                                                             ataatTGATGTGAAGCGGACAATCTTAATTTAGTTTAAGGTTGTCCTTTTTCATTTAATTGAGTGATTTATGAAAAATGGATTTTGAAGAATGTGAATCAAAAGATGCGATATAGTATTAAGAAAATGTGCCTTTTATAtt                                                <  2:1460218/141‑1 (MQ=255)

                                                                                              taatTGATGTGAAGCGGACAATCTTAATTTAGTTTAAGGTTGTCCTTTTTCATTTAATTGAGTGATTTATGAAAAATGGATTTTGAAGAATGTGAATCAAAAGATGCGATATAGTATTAAGAAAATGTGCCTTTTATAttt                                               >  1:724459/1‑141 (MQ=255)

                                                                                                attaaatgaaaaaGGACAACCTTAAACTAAATTAAGATTGTCCTTTTTCATTTAATTGAGTGATTTATGAAAAATGGATTTTGAAGAATGTGAATCAAAAGATGCGATATAGTATTa                                                                     <  4:374226‑M1/104‑1 (MQ=255)

                                                                                                atTGATGTGAAGCGGACAATCTTAATTTAGTTTAAGGTTGTCCTTTTTCATTTAATTGAGTGATTTATGAAAAATGGATTTTGAAGAATGTGAATCAAAAGATGCGATATAGTATTAAGAAAATGTGCCTTTTATATTTAg                                             >  1:927884/1‑141 (MQ=255)

                                                                                                 ttGATGTGAAGCGGACAATCTTAATTTAGTTTAAGGTTGTCCTTTTTCATTTAATTGAGTGATTTATGAAAAATGGATTTTGAAGAATGTGAATCAAAAGATGCGATATAGTATTAAGAAAATGTGCCTTTTATATTTAGc                                            <  1:406448/141‑1 (MQ=255)

                                                                                                   gATGTGAAGCGGACAATCTTAATTTAGTTTAAGGTTGTCCTTTTTCATTTAATTGAGTGATTTATGAAAAATGGATTTTGAAGAATGTGAATCAAAAGATGCGATATAGTATTAAGAAAATGTGCCTTTTATATTTAGCAt                                          <  2:587891/141‑1 (MQ=255)

                                                                                                    aTGTGAAGCGGACAATCTTAATTTAGTTTAAGGTTGTCCTTTTTCATTTAATTGAGTGATTTATGAAAAATGGATTTTGAAGAATGTGAATCAAAAGATGCGATATAGTATTAAGAAAATGTGCCTTTTATATTTAGCAtt                                         <  2:295456/141‑1 (MQ=255)

                                                                                                    aTGTGAAGCGGACAATCTTAATTTAGTTTAAGGTTGTCCTTTTTCATTTAATTGAGTGATTTATGAAAAATGGATTTTGAAGAATGTGAATCAAAAGATGCGATATAGTATTAAGAAAATGTGCCTTTTATATTTAGCAtt                                         >  2:1609683/1‑141 (MQ=255)

                                                                                                    aTGTGAAGCGGACAATCTTAATTTAGTTTAAGGTTGTCCTTTTTCATTTAATTGAGTGATTTATGAAAAATGGATTTTGAAGAATGTGAATCAAAAGATGCGATATAGTATTAAGAAAATGTGCCTTTTATATTTAGCAtt                                         <  2:405333/141‑1 (MQ=255)

                                                                                                     tgtgAAGCGGACAATCTTAATTTAGTTTAAGGTTGTCCTTTTTCATTTAATTGAGTGATTTATGAAAAATGGATTTTga                                                                                                      <  2:121184/79‑1 (MQ=255)

                                                                                                     tgtgAAGCGGACAATCTTAATTTAGTTTAAGGTTGTCCTTTTTCATTTAATTGAGTGATTTATGAAAAATGGATTTTGAAGAATGTGAATCAAAAGATGCGATATAGTATTAAGAAAATGTGCCTTTTATATTTAGCAttt                                        >  2:1450006/1‑141 (MQ=255)

                                                                                                       tgAAGCGGACAATCTTAATTTAGTTTAAGGTTGTCCTTTTTCATTTAATTGAGTGATTTATGAAAAATGGATTTTGAAGAATGTGAATCAAAAGATGCGATATAGTATTAAGAAAATGTGCCTTTTATATTTAGCAttttt                                      >  1:174205/1‑141 (MQ=255)

                                                                                                            cGGACAATCTTAATTTAGTTTAAGGTTGTCCTTTTTCATTTAATTGAGTGATTTATGAAAAATGGATTTTGAAGAATGTGAATCAAAAGATGCGATATAGTATTAAGAAAATGTGCCTTTTATATTTAGCATTTTTTCAAt                                 <  2:1286698/141‑1 (MQ=255)

                                                                                                              gacaaccttaaactaaattaagattgtccTTTTTCATTTAATTGAGTGATTTATGAAAAATGGATTTTGAAGAATGTGAATCAAAAGATGCGATATAGTATTAAGAAAATGTGCCTTTTATATTTAGCATTTTTTCAATAg                               >  2:1114246‑M2/30‑141 (MQ=255)

                                                                                                               acattgttAATTTATTTTAAGTTTGTCCTTTTTCTTTTAATTGAGTGATTTATGAAAAATGGATTGTGAAGAATGTGAATCAAAAGATGCGATACAGTATTAAGAGAATGTGCCTTTTATATTTAGCATTTTTTCAATAGa                              <  2:638191/135‑1 (MQ=255)

                                                                                                               acaaccttaaactaaattaagattgtccTTTTTCATTTAATTGAGTGATTTATGAAAAATGGATTTTGAAGAATGTGAATCAAAAGATGCGATATAGTATTAAGAAAATGTGCCTTTTATATTTAGCATTTTTTCAATAGa                              >  2:1531489‑M2/29‑141 (MQ=255)

                                                                                                               ACAATCTTAATTTAGTTTAAGGTTGTCCTTTTTCATTTAATTGAGTGATTTATGAAAAATGGATTTTGAAGAATGTGAATCAAAAGATGCGATATAGTATTAAGAAAATGTGCCTTTTATATTTAGCATTTTTTCAATAGa                              <  2:1612949‑M1/141‑1 (MQ=255)

                                                                                                                caaccttaaactaaattaagattgtccTTTTTCATTTAATTGAGTGATTTATGAAAAATGGATTTTGAAGAATGTGAATCAAAAGATGCGATATAGTATTAAGAAAATGTGCCTTTTATATTTAGCATTTTTTCAATAGaa                             >  1:1436318‑M2/28‑141 (MQ=255)

                                                                                                                 AATCTTAATTTAGTTTAAGGTTGTCCTTTTTTATTTTTTTTAGTGATTTATGAAAAATGGATTTTGAAGAATGTGAATCAAAAGATGCGATATAGTATTAAGAAAATGTGCCTTTTATATTTAGCATTTTTTCAATAGaaa                            <  2:1054110‑M1/141‑1 (MQ=255)

                                                                                                                 AATCTTAATTTAGTTTAAGGTTGTCCTTTTTCATTTAATTGAGTGATTTATGAAAAATGGATTTTGAAGAATGTGAATCAAAAGATGCGATATAGTATTAAGAAAATGTGCCTTTTATATTTAGCATTTTTTCAATAGaaa                            <  3:656815‑M1/141‑1 (MQ=255)

                                                                                                                  ATCTTAATTTAGTTTAAGGTTGTCCTTTTTCATTTAATTGAGTGATTTATGAAAAATGGATTTTGAAGAATGTGAATCAAAAGATGCGATATAGTATTAAGAAAATGTGCCTTTTATATTTAGCATTTTTTCAATAGAAAt                           <  2:3567‑M1/141‑1 (MQ=255)

                                                                                                                    cTTAATTTAGTTTAAGGTTGTCCTTTTTCATTTAATTGAGTGATTTATGAAAAATGGATTTTGAAGAATGTGAATCAAAAGATGCGATATAGTATTAAGAAAATGTGCCTTTTATATTTAGCATTTTTTCAATAGAAATta                         <  4:320701/141‑1 (MQ=255)

                                                                                                                       tatgatgTTTAAGGTTGTCCTTTTTCATTTAATTGAGTGATTTATGAAAAATGGATTTTGAAGAATGTGAATCAAAAGATGCGATATAGTATTAAGAAAATGTGCCTTTTATATTTAGCATTTTTTCAATAGAAATtatat                      <  1:4399/135‑1 (MQ=255)

                                                                                                                       aaTTTAGTTTAAGGTTGTCCTTTTTCATTTAATTGAGTGATTTATGAAAAATGGATTTTGAAGAATGTGAATCAAAAGATGCGATATAGTATTAAGAAAATGTGCCTTTTATATTTAGCATTTTTTCAATAGAAATtataa                      >  3:87332/1‑140 (MQ=255)

                                                                                                                        aTTTAGTTTAAGGTTGTCCTTTTTCATTTAATTGAGTGATTTATGAAAAATGGATTTTGAAGAATGTGAATCAAAAGATGCGATATAGTATTAAGAAAATGTGCCTTTTATATTTAGCATTTTTTCAATAGAAATtatata                     <  1:972495/141‑1 (MQ=255)

                                                                                                                        aTTTAGTTTAAGGTTGTCCTTTTTCATTTAATTGAGTGATTTATGAAAAATGGATTTTGAAGAATGTGAATCAAAAGATGCGATATAGTATTAAGAAAATGTGCCTTTTATATTTAGCATTTTTTCAATAGAAATtatata                     <  1:86644/141‑1 (MQ=255)

                                                                                                                        aTTTAGTTTAAGGTTGTCCTTTTTCATTTAATTGAGTGATTTATGAAAAATGGATTTTGAAGAATGTGAATCAAAAGATGCGATATAGTATTAAGAAAATGTGCCTTTTATATTTAGCATTTTTTCAATAGAAATtatata                     <  1:586759/141‑1 (MQ=255)

                                                                                                                         tttAGTTTAAGGTTGTCCTTCTTCATTTAATTGAGTGATTTATGAAAAATGGATTTTGAAGAATGTGAATCAAAAGATGCGATATAGTATTAAGAAAATGTGCCTTTTATATTTAGCATTTTTTCAATAGAAATTATATAg                    <  2:1161165/141‑1 (MQ=255)

                                                                                                                          ttAGTTTAAGGTTGTCCTTTTTCATTTAATTGAGTGATTTATGAAAAATGGATTTTGAAGAATGTGAATCAAAAGATGCGATATAGTATTAAGAAAATGTGCCTTTTATATTTAGCATTTTTTCAATAGAAATTATATAGa                   <  2:771038/141‑1 (MQ=255)

                                                                                                                              tttAAGGTTGTCCTTTTTCATTTAATTGAGTGATTTATGAAAAATGGATTTTGAAGAATGTGAATCAAAAGATGCGATATAGTATTAAGAAAATGTGCCTTTTATATTTAGCATTTTTTCAATAGAAATTATATAGAtttt               <  2:15071/141‑1 (MQ=255)

                                                                                                                              tttAAGGTTGTCCTTTTTCATTTAATTGAGTGATTTATGAAAAATGGATTTTGAAGAATGTGAATCAAAAGATGCGATATAGTATTAAGAAAATGTGCCTTTTATATTTAGCATTTTTTCAATAGAAATTATATAGAtttt               >  1:300176/1‑141 (MQ=255)

                                                                                                                                     ttgtccTTTTTCATTTAATTGAGTGATTTATGAAAAATGGATTTTGAAGAATGTGAATCAAAAGATGCGATATAGTATTAAGAAAATGTGCCTTTTATATTTAGCATTTTTTCAATAGAAATTATATAGATTTTAAAGCaa        <  2:1581611‑M2/135‑1 (MQ=255)

                                                                                                                                      tgtccTTTTTCATTTAATTGAGTGATTTATGAAAAATGGATTTTGAAGAATGTGAATCAAAAGATGCGATATAGTATTAAGAAAATGTGCCTTTTATATTTAGCATTTTTTCAATAGAAATTATATAGATTTTAAAGCaaa       <  1:856782‑M2/136‑1 (MQ=255)

                                                                                                                                         cgtttttCATTTAATTGAGTGATTTATGAAAAATGGATTTTGAAGAATGTGAATCAAAAGATGCGATATAGTATTAAGAAAATGTGCCTTTTATATTTAGCATTTTTTCAATAGAAATTATATAGATTTTAAAGCAAATTa    <  2:1620051/139‑1 (MQ=255)

                                                                                                                                         ccTTTTTCATTTAATTGAGTGATTTATGAAAAATGGATTTTGAAGAATGTGAATCAAAAGATGCGATATAGTATTAAGAAAATGTGCCTTTTATATTTAGCATTTTTTCAATAGAAATTATATAGATTTTAAAGCAAATTa    <  2:1483392‑M2/139‑1 (MQ=255)

                                                                                                                                         ccTTTTTCATTTAATTGAGTGATTTATGAAAAATGGATTTTGAAGAATGTGAATCAAAAGATGCGATATAGTATTAAGAAAATGTGCCTTTTATATTTAGCATTTTTTCAATAGAAATTATATAGATTTTAAAGCAAATTa    <  2:214282‑M2/139‑1 (MQ=255)

CGTATTATGGCAATCTATTTTCTGGACAGTACTAATTGGATTAGTAATTATCGGTTGGTTAGGTTCAGTTGTTAAAAATAAAAAATCGCATAAATAATTGATGTGAAGCGGACAATCTTAATTTAGTTTAAGGTTGTCCTTTTTCATTTAATTGAGTGATTTATGAAAAATGGATTTTGAAGAATGTGAATCAAAAGATGCGATATAGTATTAAGAAAATGTGCCTTTTATATTTAGCATTTTTTCAATAGAAATTATATAGATTTTAAAGCAAATTAGG  >  USA300TCH1516_ALE/1026863‑1027142

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.