BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1533866 =	173 (0.950)	9 (0.050)	9/232	NT	5.7%	coding (219/588 nt)	USA300HOU_RS07480	hypothetical protein
*	?	USA300TCH1516_ALE	1533900 =	138 (0.830)	9 (0.050)	9/232	NT	5.7%	coding (185/588 nt)	USA300HOU_RS07480	hypothetical protein

Only 100 of 193 total aligned reads displayed.

ACACGTTTGCGAAGTGAATTTGAATATCAAAAGCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCAATACGCGACTTAAATCGATATTGAAAAAGTAAATATTCAATAAA  >  USA300TCH1516_ALE/1533760‑1534039

acacGTTTGCGAAGTGAATTTGAATATCAAAAGCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAAttt                                                                                                                                              >  3:555387/1‑141 (MQ=255)

 cacGTTTGCGAAGTGAATTTGAATATCAAAAGCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTc                                                                                                                                             <  1:36874/141‑1 (MQ=255)

 cacGTTTGCGAAGTGAATTTGAATATCAAAAGCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTc                                                                                                                                             <  2:580032/141‑1 (MQ=255)

 cacGTTTGCGAAGTGAATTTGAATATCAAAAGCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTc                                                                                                                                             >  2:1069096/1‑141 (MQ=255)

  acGTTTGCGAAGTGAATTTGAATATCAAAAGCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCt                                                                                                                                            <  1:459623/141‑1 (MQ=255)

     tttGCGACGTGAATTTGAATATCAAAAGCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCCTTCACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAAt                                                                                                                                         <  3:420836/141‑1 (MQ=255)

      ttGCGAAGTGAATTTGAATATCAAAAGCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATg                                                                                                                                        <  2:911784/141‑1 (MQ=255)

       tGCGAAGTGAATTTGAATATCAAAAGCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGt                                                                                                                                       >  4:403279/1‑141 (MQ=255)

        gCGAAGTGAATTTGAATATCAAAAGCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTattatt                                                                                                                                      >  2:372795/1‑136 (MQ=255)

         cGAAGTGAATTTGAATATCAAAAGCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGttt                                                                                                                                     >  2:973339/1‑141 (MQ=255)

         cGAAGTGAATTTGAATATCAAAAGCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGttt                                                                                                                                     >  1:609303/1‑141 (MQ=255)

           aaGTGAATTTGAATATCAAAAGCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑Ca                                                                                                                                  >  2:116081/1‑141 (MQ=255)

               gAATTTGAATATCAAAAGCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑Catgat                                                                                                                              <  1:347957/141‑1 (MQ=255)

                 aTTTGAATATCAAAAGCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CAtgatga                                                                                                                            <  1:1144252/141‑1 (MQ=255)

                   ttGAATATCAAAAGCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGAATTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGAtt                                                                                                                          >  4:320998/1‑141 (MQ=255)

                       atatCAAAAGCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAAtt                                                                                                                      <  2:1016138/141‑1 (MQ=255)

                       atatCAAAAGCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAAtt                                                                                                                      >  3:482507/1‑141 (MQ=255)

                       atatCAAAAGCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAAtt                                                                                                                      >  1:1659149/1‑141 (MQ=255)

                         atCAAAAGCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAAtttt                                                                                                                    >  3:689042/1‑141 (MQ=255)

                           cAAAAGCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTg                                                                                                                  <  1:381575/141‑1 (MQ=255)

                           cAAAAGCAAAGATATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTg                                                                                                                  >  2:332936/1‑141 (MQ=255)

                              aaGCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTAt                                                                                                               >  2:1641123/1‑141 (MQ=255)

                              aaGCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTAt                                                                                                               >  3:243633/1‑141 (MQ=255)

                               aGCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAAt                                                                                                                                         >  1:1111167/1‑115 (MQ=255)

                                   caGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACa                                                                                                          >  1:1517633/1‑141 (MQ=255)

                                    aGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACaa                                                                                                         >  2:284911/1‑141 (MQ=255)

                                     gTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACaaa                                                                                                        >  2:1110667/1‑141 (MQ=255)

                                       tATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAaat                                                                                                      <  1:1435117/141‑1 (MQ=255)

                                        aTGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAaatg                                                                                                     <  2:425904/141‑1 (MQ=255)

                                           aTTAGCGATATAATCAAATATTTCCTTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGGAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAACTTTTGTATCTACAAaatgaat                                                                                                  <  2:1169557/141‑1 (MQ=255)

                                           aTTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTACTGTTTCCATG‑TCACTAATTTTTGTATCTACAAaatgaat                                                                                                  <  2:73834/141‑1 (MQ=255)

                                               gCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGttt                                                                                              >  4:452678/1‑141 (MQ=255)

                                               gCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGttt                                                                                              >  2:825789/1‑141 (MQ=255)

                                               gCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGttt                                                                                              >  2:825435/1‑141 (MQ=255)

                                                  atatAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGcc                                                                                           <  1:1536965/141‑1 (MQ=255)

                                                        tCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTCGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCGAATTTc                                                                                     >  2:407675/1‑141 (MQ=255)

                                                           aacattcattttgtagatacaaaaattaatcatcatgaaacattagaaattgcagaagcgtgacttcccacttctgcaattTCTAATGTTT‑CAtgatga                                                                                                                            >  1:951776‑M2/82‑99 (MQ=255)

                                                           aacattcattttgtagatacaaaaattaatcatcatgaaacattagaaattgcagaagcgtgacttcccacttctgcaattTCTAATGTTT‑CAtgatga                                                                                                                            <  2:951776‑M2/18‑1 (MQ=255)

                                                           aaTATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGcc                                                                                  <  1:821920/141‑1 (MQ=255)

                                                                ttCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCAtt                                                                             >  1:1501712/1‑141 (MQ=255)

                                                                ttCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCAtt                                                                             <  2:779075/141‑1 (MQ=255)

                                                                 tCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTGATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTc                                                                            <  1:1641517/141‑1 (MQ=255)

                                                                 tCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCAttt                                                                            >  1:766239/1‑140 (MQ=255)

                                                                 tCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTc                                                                            <  4:260004/141‑1 (MQ=255)

                                                                 tCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTc                                                                            >  2:801175/1‑141 (MQ=255)

                                                                  cATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCa                                                                           <  4:547305/141‑1 (MQ=255)

                                                                   aTTTGTATTCATTAACTTTATATTACTCTTAGTAAATTGAATTGCAGAAGCGTGACTTCTCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATTTTTGCCAATTTCGCCTCATTCAc                                                                          >  2:419666/1‑141 (MQ=255)

                                                                   aTTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCAc                                                                          >  1:779387/1‑141 (MQ=255)

                                                                   aTTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCAc                                                                          <  3:645440/141‑1 (MQ=255)

                                                                     ttGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACtt                                                                        <  3:293417/141‑1 (MQ=255)

                                                                           atacaaaaattaatcatcatgaaacattagaAATTGCAGAAGTGGGAAGTCACGCTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTtatat                                                                  <  2:447119‑M1/110‑1 (MQ=255)

                                                                            cATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGCCTTCCCACTTCTGCAATTTCTAATGTTT‑CAAGATGATTAATTTTTGTATTTACAAAATGAATGTTTGCCAATTTCGCGTCATTCACTTTattata                                                                 >  1:890459/1‑141 (MQ=255)

                                                                             aTTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAg                                                                >  4:653175/1‑141 (MQ=255)

                                                                              ttAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTACCAATTTCGCCTCATTCACTTTTATATAGt                                                               >  3:580295/1‑141 (MQ=255)

                                                                               tAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGtt                                                              >  2:400477/1‑141 (MQ=255)

                                                                               tAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGtt                                                              >  2:485467/1‑141 (MQ=255)

                                                                                 aCTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTaa                                                            <  1:794836/141‑1 (MQ=255)

                                                                                    ttATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCa                                                         <  1:1205729/141‑1 (MQ=255)

                                                                                    ttATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCa                                                         <  2:1641968/141‑1 (MQ=255)

                                                                                    ttATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCa                                                         <  1:939410/141‑1 (MQ=255)

                                                                                      atatTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCTCCTCATTCACTTTTATATAGTTATGCAcc                                                       >  2:250267/1‑141 (MQ=255)

                                                                                      atatTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCa                                                         <  1:80933/139‑1 (MQ=255)

                                                                                       tatTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCAccc                                                      <  1:1065737/141‑1 (MQ=255)

                                                                                       tatTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCAccc                                                      >  1:512856/1‑141 (MQ=255)

                                                                                        atTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCa                                                     <  4:221002/141‑1 (MQ=255)

                                                                                           aCGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAAc                                                  >  1:1266758/1‑141 (MQ=255)

                                                                                            cGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACt                                                 >  2:177207/1‑141 (MQ=255)

                                                                                              cTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGc                                               <  2:1266758/141‑1 (MQ=255)

                                                                                              cTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGc                                               <  3:36638/141‑1 (MQ=255)

                                                                                                tAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCaa                                             <  1:187580/141‑1 (MQ=255)

                                                                                                        tgaattgCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCAATACGCGAc                                     >  2:65720/1‑141 (MQ=255)

                                                                                                         gaattgCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCAATAcgc                                        >  1:1500158/1‑137 (MQ=255)

                                                                                                         gaattgCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCAATAcgc                                        <  2:1500158/137‑1 (MQ=255)

                                                                                                         gaattgCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCAATACGCGACt                                    >  1:231949/1‑141 (MQ=255)

                                                                                                            TTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACt                                                 <  4:503358‑M1/125‑1 (MQ=255)

                                                                                                            TTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCAATACGCGACTTaa                                 <  1:1156524‑M1/141‑1 (MQ=255)

                                                                                                             tgcagaagtgggaagtcacgcttctgcaattTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCAATACGCGACTTaaa                                >  1:1466294‑M2/32‑141 (MQ=255)

                                                                                                              GCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGACTGTTTGCCAATTTCGCCACATTCACTTTTATATAGTTAAGCACCCAAACTGCAATACGCGACTTAAAt                               <  4:607531‑M1/141‑1 (MQ=255)

                                                                                                              GCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAg                                                                <  2:1263090‑M1/108‑1 (MQ=255)

                                                                                                              GCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTACCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCAATACGCGACTTAAAt                               <  2:276200‑M1/141‑1 (MQ=255)

                                                                                                                AGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAGCTGCAATACGCGACTTAAATCg                             >  1:346348‑M1/1‑141 (MQ=255)

                                                                                                                 GAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCAATACGCGacttaaaaaaa                            >  2:609303‑M1/1‑137 (MQ=255)

                                                                                                                      gggaagtcacgcttctgcaattTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCAATACGCGACTTAAATCGATATTg                       >  2:79689‑M2/23‑141 (MQ=255)

                                                                                                                        gACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCAATACGCGACTTAAATCGATATTGaa                     >  3:409160/1‑141 (MQ=255)

                                                                                                                        gACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCAATACGCGACTTAAATCGATATTGaa                     >  2:1382099/1‑141 (MQ=255)

                                                                                                                         aagtcacgcttctgcaattTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCAAAACGCGACTTAAATCGATATTGaaa                    >  3:507660‑M2/20‑141 (MQ=255)

                                                                                                                         aCTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCa                                                         >  1:251081/1‑104 (MQ=255)

                                                                                                                         aCTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCAATACGCGACTTAAATCGATATTGaaa                    >  4:572906/1‑141 (MQ=255)

                                                                                                                         aCTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCAATACGCGACTTAAATCGATATTGaaa                    >  2:523706/1‑141 (MQ=255)

                                                                                                                             cccACTTCTGCAATTTCTAATGTTA‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTATATATAGTTAAGCACCCAAACTGCAATACGCGACTTAAATCGATATGGAAAAAGt                >  4:190592/1‑141 (MQ=255)

                                                                                                                               cACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTAACTTTTCTATAGTTAAGCACCCACACTGCAATACGCGACTTAAATCGATATTGAAAAAGTaa              >  1:152363/1‑141 (MQ=255)

                                                                                                                                    ctgcaattTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCAATACGCGACTTAAATCGATATTGAAAAAGTAAATAtt         >  2:1124103‑M2/9‑141 (MQ=255)

                                                                                                                                    ctgcaattTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCAATACGCGACTTAAATCGATATTGAAAAAGTAAATAtt         >  3:137850‑M2/9‑141 (MQ=255)

                                                                                                                                     tgcaattTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCAATACGCGACTTAAATCGATATTGAAAAAGTAAATATTc        >  1:1414222‑M2/8‑141 (MQ=255)

                                                                                                                                     tgcaattTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCAATACGCGACTTAAATCGATATTGAAAAAGTAAATATTc        >  1:588458‑M2/8‑141 (MQ=255)

                                                                                                                                       caattTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCAATACGCGACTTAAATCGATATTGAAAAAGTAAATATTCaa      <  1:6980‑M2/136‑1 (MQ=255)

                                                                                                                                       caattTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCAATACGCGACTTAAATCGATATTGAAAAAGTAAATATTCaa      <  1:284911‑M2/136‑1 (MQ=255)

                                                                                                                                        aattTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCAATACGCGACTTAAATCGATATTGAAAAAGTAAATATTCAAt     <  1:1629226‑M2/137‑1 (MQ=255)

                                                                                                                                          ttTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCAATACGCGACTTAAATCGATATTGAAAAAGTAAATATTCAATaa   >  1:1614231‑M2/3‑141 (MQ=255)

                                                                                                                                           tTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCAATACGCGACTTAAATCGATATTGAAAAAGTAACTATTCAATaaa  >  2:946704‑M2/2‑141 (MQ=255)

ACACGTTTGCGAAGTGAATTTGAATATCAAAAGCACAGTTATGATTAGCGATATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT‑CATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAAACTGCAATACGCGACTTAAATCGATATTGAAAAAGTAAATATTCAATAAA  >  USA300TCH1516_ALE/1533760‑1534039

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.