| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1855105 = | 305 (0.840) | 4 (0.010) +GTAAT |
4/250 | NT | 1.3% | intergenic (‑421/+119) | ccpA/aroF | Catabolite control protein A/Phospho‑2‑dehydro‑3‑deoxyheptonate aldolase |
| ? | USA300TCH1516_ALE | 1855145 = | 333 (0.910) | intergenic (‑461/+79) | ccpA/aroF | Catabolite control protein A/Phospho‑2‑dehydro‑3‑deoxyheptonate aldolase | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CAAGGAAACTATAGACTACTTAACTAATATGTCATGTTGAAGTAGAATATTATCTTTGAATCGACAATTTTAAACTTACAGCCATTCTAAGAGTATATTACTTTTAGAGTGGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1855218‑1855105‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTAAAATTGTCGATTCAAAGATAATATTCTACTTCAACATGACATATTAGTTAAGTAGTCTATAGTTTCCTT > USA300TCH1516_ALE/1855145‑1855217 ||||| CAAGGAAACTATAGACTACTTAACTAATATGTCATGTTGAAGTAGAATATTATCTTTGAATAGACAATTTTAAAATTACAGCCACTCTAAAAGTAATATACTCTTAGAATGACTGTAAGTTTAAAATTGTCGATTCACAGA > 2:2247394/1‑141CAAGGAAACTATAGACTACTTAACTAATATGTCATGTTGAAGTAGAATATTATCTTGGAATCGACAATTTTAAACTTACAGCCATTCTAAGAGTATATTACTTTTAGAGTGGCTGAAAGTTTAAAATTGTCGATTCAAAGA > 1:2247394/1‑141 AAGGAAACTATAGACTACTTAACTAATATGTCATGTTGAAGTAGAATATTATCTTTGAATCGACAATTTTAAACTTACGGCCATTCTGAGAGTATATTGCTTTTAGAGTGGCTGTAAGTGTAAAATTGTCGATTCAAAGAT > 1:1376641/1‑141 ATCTTTGAATCGATAATTTTAAACTTACAGCTATTATAAGAGTATATTACTTTTAGAGTGGCTGTAATTTTAAAATTGTCGATTCAAAGATAATATTCTTCTTCAATATTACATATTAGTTAAGTAGTCTATAGTTTCCTT < 2:1376641/141‑1 ||||| CAAGGAAACTATAGACTACTTAACTAATATGTCATGTTGAAGTAGAATATTATCTTTGAATCGACAATTTTAAACTTACAGCCATTCTAAGAGTATATTACTTTTAGAGTGGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1855218‑1855105‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTAAAATTGTCGATTCAAAGATAATATTCTACTTCAACATGACATATTAGTTAAGTAGTCTATAGTTTCCTT > USA300TCH1516_ALE/1855145‑1855217 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |