New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE = 2525589316 (0.870)6 (0.020) 4/230 NT 2.1% intergenic (‑161/+69) sirB/ytmI Sirohydrochlorin ferrochelatase/putative N‑acetyltransferase YtmI
?USA300TCH1516_ALE = 2525624 289 (0.900)intergenic (‑196/+34) sirB/ytmI Sirohydrochlorin ferrochelatase/putative N‑acetyltransferase YtmI
Rejected: Frequency below/above cutoff threshold.

Only 100 of 111 total aligned reads displayed.

CAACCCTTTCACACGTATTGTATACCAAATCATTTTGTTTTTGTGAAAAGAATCACATTATAATGTAAAATCAGGGAATTCCCTGATGCCTGTAGTCATGCATATTCCTTATACATTTTCCCTTTTTGTTAAATCAAAAAAAGCGACCGATATAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  USA300TCH1516_ALE/2525435‑2525589
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagcgaccgatatatTAATGCTTGCTCAAATAAATGTTGAGTAGGGATTCATATATCGGTCGCTTTTTTTGATTTAACAAAAAGGGAAAATGTATAAGGAATATGCATGACTACAGGCATCAGGGAATTCCCTGATTTTACATTATAATGTGATT  <  USA300TCH1516_ALE/2525624‑2525485
                                                                                                                                                                                                                                                                                                       
CAACCCTTTCACACGTATTGTATACCAAATCATTTTGTTTTTGTGAAAAGAATCACATTATAATGTAAAATCAGGGAATTCCCTGATGCCTGTAGTCATGCATATTCCTTATACATTTTCCCTTTTTGTTAAATCAAAAAA                                                                                                                                                            <  2:2982704/141‑1
CAACCCTTTCACACGTATTGTATACCAAATCATTTTGTTTTTGTGAAAAGAATCACATTATAATGTAAAATCAGGGAATTCCCTGATGCCTGTAGTCATGCATATTCCTTATACATTTTCCCTTTTTGTTAAATCAAAAAA                                                                                                                                                            >  1:3847989/1‑141
CAACCCTTTCACACGTATTGTATACCAAATCATTTTGTTTTTGTGAAAAGAATCACATTATAATGTAAAATCAAGGAATTCCCTGATGCCTGTAGTCATGCATATTCCTTATACATTTTCCCTTTTTGTTAACTCAAAAAA                                                                                                                                                            >  1:1459146/1‑141
 AACCCTTTCACACGTATTGTATCCCAAATCATTTTGTTTTTGTGAAAAGAATCACATTATAATGTAAAATCAGGGAATTCCCTGATGCCTGTAGTCATGCATATTCCTTATACATTTTCCCTTTTTGTTAAATCAAAAAAA                                                                                                                                                           <  1:2260012/141‑1
 AACCCTTTCACACGTATTGTATACCAAATCATTTTGTTTTTGTGAAAAGAATCACATTATAATGTAAAATCAGGGAATTCCCTGATGCCTGAAGTCATGCATATTCCTTATACATTTTCCCTTTTTGTTAAATCAAAAAAA                                                                                                                                                           >  1:3877585/1‑141
 AACCCTTTCACACGTATTGTATACCAAATCATTTTGTTTTTGTGAAAAGAATCACAATATAATGTAAAATCAGGGAATTCCCTGATGCCTGTAGTCATGCATATTCCTTATACATTTTCCCTTTTTGTTAAATCAAAAAAA                                                                                                                                                           >  1:2247367/1‑141
  ACCCTTTCACACGTATTGTATACCAAATCATTTTGTTTTTGTGAAAAGAATCACATTATAATGTAAAATCAGGGAATTCCCTGATGCCTGTAGTCATGCATATTCCTTATACATTTTCCCTTTTTGTTAAATCAAAAAAAG                                                                                                                                                          <  1:1177465/141‑1
  ACCCTTTCACACGTATTGTATACCAAATCATTGTGTTTTTGTGAAAAGAATCACATTATAATGTAAAATCAGGTAATTCCCTGATACCTGTAGTCATGCATATTCCTTATACATTTTCCCTTTTTGTTAAATCAAAAAAAG                                                                                                                                                          <  2:595918/141‑1
   CCCTTTCACACGTATTGTATACCAAATCATTTTGTTTTTGTGAAAAGAATCACATTATAATGTAAAATCAGGGAATTCCCTGATGCCTGTAGTCATGCATATTCCTTATACATTTTCCCTTTTTGTTAAATCAAAAAAAGC                                                                                                                                                         >  1:573715/1‑141
   CCCTTTCACACGTATTGTATACCAAATCATTTTGTTTTTGTGAAAAGAATCACATTATAATGTAAAATCAGGGAATTCCCTGATGCCTGTAGTCATGCATATTCCTTATACATTTTCCCTTTTTGTTAAATCAAAAAAAGC                                                                                                                                                         <  1:1163259/141‑1
    CCTTTCACACGTATTGTATTCCAAAGCATTTTATTTTTGTGTAAAGAATCACATTATAATGGAAAATCAGCGAATTCCCTGATTCCTGTAGTCATGCATATTCCTTATACATTTTCCCTCTTTGTTAAATCAAAAAAAGCG                                                                                                                                                        <  2:714185/141‑1
     ctgTCACACGTATTGTATACCAAATCATTTTGTTTTTGTGAAAAGAATCACATTATAATGTAAAATCAGGGAATTCCCTGATGCCTGTAGTCATGCATATTCCTTATACATTTTCCCTTTTTGTTAAATCAAAAAAAGCGA                                                                                                                                                       <  1:2394985/138‑1
     CTTTCACAGGTAGTGTATAATAAATCATTTTGTTTTTGTGAAAAGAATCACATTATAATGTAAAATCAGGGAATTCCCTGATGCCTGTAGTCATGCATATTCCTTATACATTTTCCCTTTTTGTTAAATCAAAAAAAGCGA                                                                                                                                                       <  2:3053860/141‑1
      TTTCACACGTATTGTATACCAAATCATTTTGTTTTTGTGAAAAGAATCACATTATAATGTAAAATCAGGGAATTCCCTGATGCCTGTAGTCATGCATATTCCTTATACATTTTCCCTTTTTGTTAAATCAAAAAAAGCGtc                                                                                                                                                      >  2:771710/1‑139
      TTTCACACGTATTGTATACCAAATCATTTTGTTTTTGTAAAAAGAATCATATTATAATGTAAAATCAGGTCATTCCCTGATGCCAGTAGTCATTTATATTCCTTATACATTTTCCCTTTTTTTTCAATTAAAAAAAGTGAC                                                                                                                                                      >  2:2118072/1‑141
       TTCACACGTATTGTATACCAAATCATTTTGTTTTTGTGAAAAGAATCACATTATAATGTAAAATCAGGGAATTCCCTGATGCCTGTAGTCATGCATATTCCTTATACATTTTCCCTTTTTGTTAAATCAAAAAATGCTACC                                                                                                                                                     >  2:2269035/1‑141
       TTCACACGTATTGTATACCAAATCATTTTGTTTTTGTGAAAAGAATCACATTATAATGTAAAATCAGGGAATTCCCTGATGCCTGTAGTCATGCATATTCCTTATACATTTTCCCTTTTTGTTAAATCAAAAAAAGCGACC                                                                                                                                                     >  1:4315928/1‑141
        TCACACGTATTGTATACCAAATCATTTTGTTTTTGTGAAAAGAATCACATTATAATGTAAAATCATGTAATTCCCTGATGCCTGTAGTCATGCATATTCCTTATACATTTTCCCTTTTTGTTAAATCAAAAAAAGCTACCt                                                                                                                                                    >  2:2174664/1‑140
         tgcagGTATTGTATAACAAAGGATTTGAGTTTTGTTAAAAGAATCACATTATAATGTAAAATCAGAGAATTCCATGATGCATGTAGTCATGCATATTCCGTATACATTTTCCCTTTTTGTTAAATCAAAAAAAGCGACCGA                                                                                                                                                   <  2:2551967/136‑1
         CACACGTATTGTATACCAAATCATTTTGTTTTTGTGAAAAGAATCACATTATAATGTAAAATCAGGGAATTCCCTGATGCCTGTAGTCATGCATATTCCTTATCCATTTTCCCTTTTTGTTAAATCAAAAAAATCGACCGA                                                                                                                                                   >  1:1341195/1‑141
         CACACGTATTGTATACCAAATCATTTTGTTTTTGTGAAAAGAATCACATTATAATGTAAAATCAGGGAATTCCCTGATGCCTGTAGTCATGCATATTCCTTATACATTTTCCCTTTTTGTTAAATCAAAAAAATCGACCGA                                                                                                                                                   >  2:3879265/1‑141
         CACACGTATTGTATACCAAATCATTTTGTTTTTGTGAAAAGAATCACATTATAATGTAAAATCAGGGAATTCCCTGATGCCTGTAGTCATGCATATTCCTTATACATTTTCCCTTTTTGTTAAATCAAAAAAAGCGACCGA                                                                                                                                                   <  1:79249/141‑1
         CACACGTATTGTATACCAAATCATTTTGTTTTTGTGAAAAGAATCACATTATAATGTAAAATCAGGGAATTCCCTGATGCCTGTAGTCATGCATATGCCTTATACATTTTCCCTTTTTGTTAAATCAAAAAAAACGACCGA                                                                                                                                                   >  1:897004/1‑141
         CACACGTATTGTATACCAAATCATTTTGGTTTTGTGAAAAGAATCACATTATAATGTAAAATCAGGGAATTCCCTGATGCCTGTAGTCATGCATATTCCTTATATATTTTCCCTTTTTATTAAATCAAAAAAAGCGAACGA                                                                                                                                                   >  2:2217290/1‑141
         CACACGTATTGTATACCAAATCATGTTGTTTTTGTGAAAAGAATCACATTATAATGTAAAATCAGGGAATTCCCTGATGCCTGTAGTCATGCATATTCTTTATACATGTTCCCTTTTTGTTAAATCAAAAAAAGCGACCGA                                                                                                                                                   <  2:1372539/141‑1
          ACACGTATTGTATACCAAATCATTTTGTTTTTGTGAAAAGAATCACATTATAATGTAAAATCAGGGAATTCCCTGATGCCTGTAGTCATGCATATTCCTTATACATTTTCCCTTTTTGTTAAATCAAAAAAAGCGACCGAT                                                                                                                                                  >  1:2130983/1‑141
            ACGTATTTTATACCAAATCATTTTGTGTTTGTGAAAAGAAGCACATTATAATATAAAAGCAGGGAATTCAATGATGCCTGTAGTAATGCATATTGCTTATACATTTTCCCTTTTTGTTAAATCAAAAAAAGCGACCGATAT                                                                                                                                                <  2:4060863/141‑1
            ACGTATTGTATACCAAATCATTTTGTTTTTGTGAAAAGAATCACATTATAATGTAAAATCAGGGAATTCCCTGATGCCTGTAGTCATGCATATTCCTTATACATTTTCCCTTTTTGTTAAATCAAAAAAAGCGACCGATAT                                                                                                                                                <  2:184209/141‑1
            ACGTATTGTATACCAAATCATTTTGTTTTTGTGAAAAGAATCACATTATAATGTAAAATCAGGGAATTCCCTGATGCCTGTAGTCATGCATATTCCTTATACATTTTCCCTTTTTGTTAAATCAAAAAAAGCGACCGATAT                                                                                                                                                <  1:1851599/141‑1
            ACGTATTGTATACCAAATCATTTTGTTTTTGTGAAAAGAATCACATTATAATGTAAAATCAGGGAATTCCCTGATGCCTGTAGTCATGCATATTCCTTATACATTTTCCCTTTTTGTTAAATCAAAAAAAGCGACCGATAT                                                                                                                                                <  1:1722811/141‑1
             CGTATTGTATACCAAATCATTTTGTTTTTGTGAAAAGAATCACATTATAATGTAAAATCAGGGAATTCCCTGATGCCTGTAGTCATGCATATTCCTTATACCTTTTCCCTTTTTGTTAAATCAAAAAAAGCGCCCGttttt                                                                                                                                               >  2:276471/1‑136
             CGTATTGTATACCAAATCATTTTGTTTTTGTGAAAAGAATCACATTATAATGTAAAATCAGGGAATTCCCTGATGCCTGTAGTCATGCATATTCCTTATACATTTTCCCTTTTTGTTAAATCAAAAAAAGCGACCGATATA                                                                                                                                               >  1:1406958/1‑141
               TATTGTATACCAAATCATTTTGTTTTTCAGCACAGAATCCCATTCTAATGTAAAATCAGGGAATTCCCTGATCCCTGTAGTCATGCATATTCCTTATACATTTTCCCTTTTTGTTACATCTAAAACAGCAACCGCTATATT                                                                                                                                             >  2:753664/1‑141
                  TGTATACCAAATCATTTTGTTTTTGTGAAAAGAATCACATTATAATGTAAAATCAGGGAATTCCCTGATGCCTGTAGTCATGCATATTCCTTATACATTTTCCCTTTTTTTTAAATCAAAATAATCGCACGATATGTTAct                                                                                                                                          >  2:2957415/1‑139
                   GTATACCAAATCATTTTGTTTTTGTGAAAAGAATCACATTATAATGTAAAATCAGGGAATTCCCTGATGCCTTTAGTCATGCATATTCCTTATACATTTTCCCTTTTTGTTAAATCAAAAAATTCGACAGATTTATTAATc                                                                                                                                         >  2:4392836/1‑140
                     ATACCAAATCATTTTGTTTTTGTGAAAAGAATCACATTATAATGTAAAATCATGGAATTCCCTGATGCCTGTAGTCATGCATATTCCTTATACATTTTCCCTTTTTGTTAAATCAATACAAGCGACTTATATATTAATccc                                                                                                                                       >  2:3671729/1‑138
                                                   ATCACATTATAATGTAAAATCAGGGAATTCCCTGATGCCTGTAGTCATGCATATTCCTTATACATTTTCTCTTTTTGTTAAATCAAAAAAAGCGACCGATATATTAATGCTTGCTCAAATAAATGTTGAGTAGGGATTCAT                                                                                                         <  1:973467/141‑1
                                                            TAATGTAAAATCAGTGAATTCCCTGATGCCTGTAGTCATGCATATTCCTTATACATTTTCCCTTTTTGTTAAATCAAAAAAAGCGACCGATATATTAATGCTTGCTCAAATAAATGTTGAGTAGGGATTCATATATCGGTC                                                                                                <  2:2045990/141‑1
                                                            TAATGTAAAATCAGGGAATTCCCTGATGCCTGTAGTCATGCATATTCCTTATACATTTTCCCTTTTTGTTAAATCAAAAAAAGCGACCGATATATTAATGCTTGCTCAAATAAATGTTGAGTAGGGATTCATATATCGGTC                                                                                                <  2:3544772/141‑1
                                                              ATGTAAAATCAGGGAATTCCCTGATTTCTGTAGTCATGCATATTCCTTATACATTTTCCCTTTTTGTTAAATCAAAAAAAGCGACCGATATATTAATGCTTGCTCAAATAAATGTTGAGTAGGGATTCATATATCGGTCGC                                                                                              <  2:225986/141‑1
                                                              ATGTAAAATCAGGGAAGTCCCTGATGCCTGTAGTCATGCATATTCCTTATACATTTTCCCTTTTTGTTAAATCAAAAAAAGCGACCGATATATTAATGCTTGCTCAAATAAATGTTGAGTAGGGATTCATATATCGGTCGC                                                                                              <  1:1327119/141‑1
                                                                                                                                      cactaggAGCGACCGATATATTAATGCGTACTATAATAAATGTTGAGTAGGTATTGATATATCGGTCGCTTTTTTTGATTTAACAAAAAGGGAAAATGTATAAGGAATATGCATGACTACAGGCATCAGGGAATTCCCTGA                      <  2:3700153/134‑1
                                                                                                                                            AAGCGACCGATATATTAATGCTTGTCTATATATATGTTGAGTAGGGATTCATATATCGGTCGCTTTTTTTGATTTAACAAAAAGGGAAAATGTATAAGGAATATGCATGACTACAGGCATCAGGGAATTCCCTGATTTTAC                <  2:4026147/141‑1
                                                                                                                                            AAGCGACCGATATATTAATGCTTGCTCAAATAAATGTTGAGTAGGGATTCATATATCGGTCGCTTTTTTTGATTTAACAAAAAGGGAAAATGTATAAGGAATATGCATGACTACAGGCATCAGGGAATTCCCTGATTTTAC                >  2:2223862/1‑141
                                                                                                                                            AAGCGACCGATATATTAATGCTTGCTCAAATAAATGTTGAGTAGGGATTCATATATCGGTCGCTTTTTTTGATTTAACAAAAAGGGAAAATGTATAAGGAATATGCATGACTACAGGCATCAGGGAATTCCCTGATTTTAC                >  1:3613638/1‑141
                                                                                                                                            AAGCGACCGATATATTAATGCTTGCTCAAATAAATGTTGAGTAGGGATTCATATATCGGTCGCTTTTTTTGATTTAACAAAAAGGGAAAATGTATAAGGAATATGCATGACTACAGGCATCAGGGAATTCCCTGATTTTAC                >  2:2666740/1‑141
                                                                                                                                            AAGCGACCGATATATTAATGCTTGCTCAAATAAAGGTTGAGTAGGGATTCATATATCGGTCGCTTTTTTTGATTTAACAAAAAGGGAAAATGTATAAGGAATATGCATGACTACAGGCATCAGGGAATTCCCTGATTTTAC                >  1:3270583/1‑141
                                                                                                                                             agtGACCTATATATTAATGGTTGGTCAAATATTTGTTGAGTAGGGATTCATATATCGGTCGCTTTTTTTGATTTAACAAAAAGGGAAAATGTATAAGGAATATGAGTGACTACAGGCATCAGGGAATTCCCTGATTTTACA               <  2:2346016/138‑1
                                                                                                                                             agccatCGATATATTAATGCTTGCTCAAATAAATGTTGAGTAGGGATTCATATATCGGTCGCTTTTTTTGATTTAACAAAAAGGGAAAATGTATAAGGAATATGCATGACTACAGGCATCAGGGAATTCCCTGATTTTACA               <  1:1853123/135‑1
                                                                                                                                             AGCGACCGATATATTAATGCTTGCTCAAATAAATGTTGAGTAGGGATTCATATATCGGTCGCTTTTTTTGATTTAACCAAACGGAGAAATGTATAAGGAATATACATGACTACAGGCATCAGAGAATTCCATAATTTTACA               >  2:47461/1‑141
                                                                                                                                             AGCGACCGATATATTAATGCTTGCTCAAATAAATGTTGAGTAGGGATTCATATATCGGTCGCTTTTTTTGATTTAACAAAAAGGGAAAATGTATAAGGAATATGCATGACTACAGGCATCAGGGAATTCCCTGATTTTACA               <  2:3619345/141‑1
                                                                                                                                             AGCGACCGATATATTAATGCTTGCTCAAATAAATGTTGAGTAGGGATTCATATATCGGTCGCTTTTTTTGATTTAACAAAAAGGGAAAATGTATAAGGAATATGCATGACTACAGGCATCAGGGAATTCCCTGATTTTACA               >  1:343986/1‑141
                                                                                                                                             AGCGACCGATATATTAATGCTTGCTCAAATAAATGTTGAGTAGGGATTCATATATCGGTCGCTTTTTTTGATTTAACAAAAAGGGAAAATGTATAAGGAATATGCATGACTACAGGCATCAGGGAATTCCCTGATTTTACA               >  1:2029918/1‑141
                                                                                                                                             AGCGACCGATATATTAATGCTTGCTCAAATAAATGTTGAGTAGGGATTCATATATCGGTCGCTTTTTTTGATTTAACAAAAAGGGAAAATGTATAAGGAATATGCATGACTACAGGCATCAGGGAATTCCCTGATTTTACA               >  2:3689219/1‑141
                                                                                                                                             AGCGACCGATATATTAATGCTTGCTCAAATAAATGTTGAGTAGGGATTCATATATCGGTCGCTTTTTTTGATTTAACAAAAAGGGAAAATGTATAAGGAATATGCATGACTACAGGCATCAGGGAATTCCCTGATTTTACA               >  2:1014859/1‑141
                                                                                                                                             AGCGACCGATATATTAATGCTTGCTCAAATAAATGTTGAGTAGGGATTCATATATCGGTCGCTTTTTTTGATTTAACAAAAAGGGAAAATGTATAAGGAATATGCATGACTACAGGCACCCGGGGATTCCCTGATATTACA               >  2:6146/1‑141
                                                                                                                                             AGCGACCGATATATTAATGCTTGCTCAAATAAATGTTGAGTAGGGATTCATATATCGGTCGCTTTTTTTGATTTAACAAAAAGACAACTTACATAAGGTTTATGCATTACTACATGCATCAGGGAATTCACTGATTTTACA               >  2:3802624/1‑141
                                                                                                                                             AGCGACCGATATATTAATGCTTGATCAAAGAAATGTTGAGTAGGGATTCATATATCGGTCGCTTTTTTTGATTTAACAAAAAGGGAAAATGTATAAGGAATATGCATGACTACAGGCATCAGGGAATTCCCTGATTTTACc               >  2:3366192/1‑140
                                                                                                                                              GCGACCGATATATTAATGCTTGCTCAAATAAATGTTGAGTAGGGATTCATATATCGGTCGCTTTTTTTGATTTAAGAAAGGGGGAAAATGTATAAGGAATATGCATGACTACAGGCATCAGGGAATTCCCTGATTTTACAT              >  1:161099/1‑141
                                                                                                                                              GCGACCGATATATTAATGCTTGCTCAAATAAATGTTGAGTAGGGATTCATATATCGGTCGCTTTTTTTGATTTAACAAAAAGGGAAAATGTATCAGGAATATGCATGCCTACAGGCATCAAGGACTTCCCTGATTTTcttt              >  2:1034507/1‑137
                                                                                                                                              GCGACCGATATATTAATGCTTGCTCAAATAAATGTTGAGTAGGGATTCATATATCGGTCGCTTTTTTTGATTTAACAAAAAGGGAAAATGTATAAGGAATATGCATGACTACAGGCATCAGGGAATTCCCTGATTTTACAg              >  1:3035838/1‑140
                                                                                                                                              GCGACCGATATATTAATGCTTGCTCAAATAAATGTTGAGTAGGGATTCATATATCGGTCGCTTTTTTTGATTTAACAAAAAGGGAAAATGTATAAGGAATATGCATGACTACAGGCATCAGGGAATTCCCTGATTTTACAT              >  1:3605312/1‑141
                                                                                                                                              GCGACCGATATATTAATGCTTGCTCAAATAAATGTTGAGTAGGGATTCATATATCGGTCGCTTTTTTTGATTTAACAAAAAGGGAAAATGTATAAGGAATATGCATGACTACAGGCATCAGGGAATTCCCTGATTTTACAT              >  2:733118/1‑141
                                                                                                                                              GCGACCGATATATTAATGCTTGCTCAAATAAATGTTGAGTAGGGATTCATATATCGGTCGCTTTTTTTGATTTAACAAAAAGGGAAAATGTATAAGGAATATGCATGACTACAGGCATCAGGGAATTCCCTGATTTTACAT              >  1:3569732/1‑141
                                                                                                                                              GCGACCGATATATTAATGCTTGCTCAAATAAATGTTGAGTAGGGATTCATATATCGGTCGCTTTTTTTGATTTAACAAAAAGGGAAAATGTATAAGGAATATGCATGACTACAGGCATCAGGGAATTCCCTGAGTTTACtt              >  1:3391302/1‑139
                                                                                                                                              GCGACCGATATATTAATGCTTGCTCAAATAAATGTTGAGTAGGGATTCATATATCGGTCGCTTTTTTTGATTTAACAAAAAGGGAAAATGTATAAGGAATATGCATGACTACAGGCATCAGGGAATTACCTGATTTTCCAT              >  1:105791/1‑141
                                                                                                                                              GCGACCGATATATTAATGCTTGCTCAAATAAATGTTGAGTAGGGATTCATATATCGGTCGCTTTTTTTGATTTAACAAAAAGGGAAAATGTATAAGGAATATGCATGAATACAGGCATCAGGCAATTCCCTGATTTTACAT              >  2:3837434/1‑141
                                                                                                                                              GCGACCGATATATTAATGCTTGCGCAAATAAATGTTGAGTAGGGATTCATATATCGGTCGCTTTTTTTGATTTAACAAAAAGGGAAAATGTATAAGGAATATGCATGACTACAGGCATCAGGGAATTCCCTGATTTTACAT              >  1:910205/1‑141
                                                                                                                                               CGACCGATATATTAATGCTTGCTCAAATAAATGTTGAGTAGGGATTCATATATCGGTCGCTTTTTTTTATTTAACAAAAAGGGAAAATGTATAAGGAATATGCATGACTACAGACATCAGGGAATTACGTGATTTTACATT             >  2:837887/1‑141
                                                                                                                                               CGACCGATATATTAATGCTTGCTCAAATAAATGTTGAGTAGGGATTCATATATCGGTCGCTTTTTTTGATTTAACATTTTGGGAAAACCGACAAGGAATATGCATGACTACAGGCATCAGGGAATTCCCTGATTTTACATT             >  1:4176585/1‑141
                                                                                                                                               CGACCGATATATTAATGCTTGCTCAAATAAATGTTGAGTAGGGATTCATATATCGGTCGCTTTTTTTGATTTAACAAAAAGGGAAAATGTATACGGAATATGCATGACTACAGACATCAGCGCATTCCCTACTTTTACATT             >  2:107490/1‑141
                                                                                                                                               CGACCGATATATTAATGCTTGCTCAAATAAATGTTGAGTAGGGATTCATATATCGGTCGCTTTTTTTGATTTAACAAAAAGGGAAAATGTATAAGGAATATGCATGACTACAGGCATCAGGTAATTACCTGATTTTACATT             >  2:2086547/1‑141
                                                                                                                                               CGACCGATATATTAATGCTTGCTCAAATAAATGTTGAGTAGGGATTCATATATCGGTCGCTTTTTTTGATTTAACAAAAAGGGAAAATGTATAAGGAATATGCATGACTACAGGCATCAGGGAATTCCCTGATTTTACATT             >  2:3053846/1‑141
                                                                                                                                               CGACCGATATATTAATGCTTGCTCAAATAAATGTTGAGTAGGGATTCATATATCGGTCGCTTTTTTTGATTTAACAAAAAGGGAAAATGTATAAGGAATATGCATGACTACAGGCATCAGGGAATTCCCTGATTTTACATT             >  1:3941218/1‑141
                                                                                                                                               CGACCGATATATTAATGCTTGCTCAAATAAATGTTGAGTAGGGATTCATATATCGGTCGCTTTTTTTGATTTAACAAAAAGGGAAAATGTATAAGGAATATGCATGACTACAGGCATCAGGGAATTCCCTGATTTTACATT             >  1:4070824/1‑141
                                                                                                                                               CGACCGATATATTAATGCTTGCTCAAATAAATGTTGAGTAGGGATTCATATATCGGTCGCTTTTTTTGATTTAACAAAAAGGGAAAATGTATAAGGAATATGCATGACTACAGGCATCAGGGAATTCCCTGATTTTACATT             >  2:3412414/1‑141
                                                                                                                                               CGACCGATATATTAATGCTTGCTCAAATAAATGTTGAGTAGGGATTCATATATCGGTCGCTTTTTTTGATTTAACAAAAAGGGAAAATGTATAAGGAATATGCATGACTACAGGCATCAGGGAATTCCCTGATTTTACATT             >  2:49069/1‑141
                                                                                                                                               CGAACGATATATTAATGCTTGCTCAAATAAATGTTGAGTAGGGATTCAGATATCGGTCGCTGTTTTTGATTTAACAAAAAGGGAAAATGTATAAGGAATATGCATGACTACAGGCATCAGGGAATTCCCTGATTTTACATT             <  1:1841843/141‑1
                                                                                                                                                GACCGATATATTAATGCTTGCTCAAATAAATGTTGAGTAGGGATTCATATATCGGTCGCTTTTTTTGATTTAACAAAAAGGGAAAATGTATAAGGAATATGCATGACTACAGGCATCAGGGAATTCCCTGATTTTACATTA            >  1:1037591/1‑141
                                                                                                                                                 ACCGATATATTAATGCTTGGTCAAATAAATGTTGAGTATGGATTCATATATCGGTCGCTTTTTTTGATTTAACAAAAAGGGAAAATGTATAAGGAATATGCATGACTACAGGCATCAGGGAATTCCCTGATTTTACATTAT           <  1:4264728/141‑1
                                                                                                                                                 ACCGATATATTAATGCTTGCTCAAATAAATGTTGAGTAGGGATTCATATATCGGTCGCTTTTTTTGATTTAACAAAAAGGGAAAATGTATAAGGAATATGCATGACTACAGGCATCAGGGAATTCCCTGATTTTACATTAT           <  2:3018445/141‑1
                                                                                                                                                  ccaaaATATAAATGATTGGTCAAATAAATGTTGAGTAAGAATTCATATATCGGTCGCTTTTTTTGATTTAACAAAAAGGGAAAATGTATAAGGAATATGCATGACTACAGGCATCAGGGAATTCCCTGATTTTACATTATA          <  2:1659361/136‑1
                                                                                                                                                  aCGATATATTAATGTTTGCTTAAATAAATGTTGAGTAGGGATTTATATATTTGTCAATTTTTTTGATTTAACAAAAAGGGAAAATGTATAAGGAATATGTATGACTACAGGCATCAGGGAATTCCCTGATTTTACATTATA          <  2:1407072/140‑1
                                                                                                                                                  CCGATATATTAATGCTTGCTCAAATAAATGTTGAGTAGGGATTCATATATCGGTCGCTTTTTTTGATTTAACAAAAAGGGAAAATGTATAAGGAATATGCATGACTACAGGCATCAGGGAATTCCCTGATTTTACATTATA          >  2:3580771/1‑141
                                                                                                                                                  CCGATATATTAATGCTTGCTCAAATAAATGTTGAGTAGGGATTCATATATCGGTCGCTTTTTTTGATTTAACAAAAAGGGAAAATGTATAAGGAATATGCATGACTACAGGCATCAGGGAATTCCCTGATTTTACATTATA          <  1:4140507/141‑1
                                                                                                                                                  CCGATATATTAATGCTTGCTAAAATAAATGTTGAGTAGGGATTCATATATCGGTCGCTTTTTTTGATTTAACAAAAAGGGAAAATGTATAAGGAATATGCATGACTACAGGCATCAGGGAATTCCCTGACTTTACATTATA          <  1:2531697/141‑1
                                                                                                                                                   CGATATATTAATGCTTGCTCAAATAAATGTTGAGTAGGGATTCATATATCGGTCGCTTTTTTTGATTTAACAAAAAGGGAAAATGTATAAGGAATATGCATGACTACAGGCATCAGGGAATTCCCTGATTTTACATTATAA         >  1:4126285/1‑141
                                                                                                                                                    GATATATTAATGCTTGCTCAAATAAATGTTGAGTAGGGATTCATATATCGGTCGCTTTTTTTGATTTAACAAAAAGGGAAAATGTATAAGGAATATGCATGACTACAGGCATCAGGGAATTGCCTCATTTTACATTATAct        >  2:3908358/1‑139
                                                                                                                                                     gTATATTAATGCTTGGTCAAATAAATGTTGAGTAGGGATTCAGATATCGGTCGCTTTTTTTGATTTAACAAAAAGGGAAAATGTATAAGGAATATGCATGACTACAGGCATCAGGGAATTCCCTGATTTTACATTATAATG       <  2:1873961/140‑1
                                                                                                                                                     ATATATTAATGCTTGCTCAAATAAATGTTGAGTAGGGATTCATATATCGGTCGCTTTTTTTGATTTAACAAAAAGGTAAAATGTATAAGGAATATGCATGACTATAATCATTAGGGCATTCACTGATTTTAACTTATAATG       >  2:4338885/1‑141
                                                                                                                                                     ATATATTAATGCTTGCTCAAATAAATGTTGAGTAGGGATTCATATATCGGTCGCTTTTTTTGATTTAACAAAAAGGGAAAATGTATAAGGAATATGCATGACTACAGGCATCAGGGAATTCCCTGATTTTACATTATAATG       >  2:2439131/1‑141
                                                                                                                                                      TATATTAATGCTTGTGCAAATAAATGTTGAGTAGTGATTCATATATCGGTCGCTTTTTTTGATTTAACAAAAAGGGAAAATGTATAAGGAATATGCATGACTACAGGCATCAGGGAATTCCCTGATTTTACATTATAATGT      <  2:1935208/141‑1
                                                                                                                                                      TATATTAATGCTTGCTCAAATAAATGTTGAGTAGGGATTCATATATCGGTCGCTTTTTTTGATTTAACAAAAAGGGAAAATGTATAAGGAATGTGCATGACTACAGGCACCAGGGAATTCCCTGATTTTACATTATAATGT      <  1:2319028/141‑1
                                                                                                                                                      TATATTAATGCTTGCTCAAATAAATGTTGAGTAGGGATTCATATATCGGTCGCTTTTTTTGATTTAACAAAAAGGGAAAATGTATAAGGAATATGCATGACTACAGGCATCAGGGAATTCCCTGATTTTACATTATAATGT      >  1:2504442/1‑141
                                                                                                                                                      TATATTAATGCTTGCTCAAATAAATGTTGAGTAGGGATTCATATATCGGTCGCTTTTTTTGATTTAACAAAAAGGGAAAATGTATAAGGAATATGCATGACTACAGGCATCAGGGAATTCCCTGATTTTACATTATAATGT      <  2:1767677/141‑1
                                                                                                                                                       ATATTAATGCTTGCTCAAATAAATGTTGAGTAGGGATTCATATATCGGTCGCTTTTTTTGATTTAACAAAAAGGGAAAATGTATAAGGAATATGCATGACTACAGGCATCAGGGAATTCCCTGATTTTACATTATAATGTG     <  2:322339/141‑1
                                                                                                                                                       ATATTAATGCTTGCTCAAATAAATGTTGAGTAGGGATTCATATATCGGTCGCTTTTTTTGATTTAACAAAAAGGGAAAATGTATAAGGAATATGCATGACTACAGACATCAGGGAATTGCCTGATTTTATATTATAATGga     >  2:4181987/1‑139
                                                                                                                                                       ATATTAATGATTGCTCAAATAACTGATGAGCAGGGATTCATATATCGGTCGCTTTTTTTGATTTAACAAAAAGGGAAAATGTATAAGGCATATGCATGACTACATGCATGAGGGAATTCACTGATTTTCCAGTATCATGTc     >  2:4317043/1‑140
                                                                                                                                                         ATTAATGCTTGCTCAAATAAATGTTGAGTAGGGATTCATATATCGGTCGCTTTTTTTGATTTAACAAAAAGGGAAAATGTATAAGGAATATGCATGACTACAGGCATCAGGGAATTCCCTGATTTTACATTATAATGTGAT   <  2:2632712/141‑1
                                                                                                                                                          TTAATGCTTGCTCAAATAAATGTTGAGTAGGGATTCATATATCGGTCGCTTTTTTTGATTTAACAAAAAGGGAAAATGTATAAGGAATATGCATGACTACAGGCATCAGGGAATTCCCTGATTTTACATTATAATGTGATT  >  2:2266943/1‑141
                                                                                                                                                                                                                                                                                                       
CAACCCTTTCACACGTATTGTATACCAAATCATTTTGTTTTTGTGAAAAGAATCACATTATAATGTAAAATCAGGGAATTCCCTGATGCCTGTAGTCATGCATATTCCTTATACATTTTCCCTTTTTGTTAAATCAAAAAAAGCGACCGATATAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  USA300TCH1516_ALE/2525435‑2525589
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagcgaccgatatatTAATGCTTGCTCAAATAAATGTTGAGTAGGGATTCATATATCGGTCGCTTTTTTTGATTTAACAAAAAGGGAAAATGTATAAGGAATATGCATGACTACAGGCATCAGGGAATTCCCTGATTTTACATTATAATGTGATT  <  USA300TCH1516_ALE/2525624‑2525485

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.