| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2660570 = | 361 (0.990) | 5 (0.020) | 5/236 | NT | 1.6% | intergenic (+12/+237) | ldhD_1/ybiV | D‑lactate dehydrogenase/Sugar phosphatase YbiV |
| ? | USA300TCH1516_ALE | 2660603 = | 281 (0.850) | intergenic (+45/+204) | ldhD_1/ybiV | D‑lactate dehydrogenase/Sugar phosphatase YbiV | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TATCTCAAACAGGTTAGGCAATAATGCCATAGTAAAATAAGCGCACTAAAATCATTTGAATAGATGATAAAATAAAGCGGATTTTAATCAAATCGATTTTGATACAGATATACAAA‑ATAAAAAGCAAAGGCACATGGCGCGCCTTTGCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2660721‑2660570‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctttgcttttTATTTTGTATATCTGTATCAAAATCGATTTGATTAAAATCCGCTTTATTTTATCATCTATTCAAATGATTTTAGTGCGCTTATTTTACTATGGCATTATTGCCTAACCTGTTTGAGATATATTAATATTTGATGATTCGT > USA300TCH1516_ALE/2660603‑2660742 TATCTCAAACATGTTAGGCAATATAAATATATTAAAATAAGCGCACTAAAATCATTTGAAGAGATGATAAAATAAAGCGGATTTTAATCAAATCGATTTTGATACAGTTATACAAA‑ATAAAAAGCAAAGGCACATGGCGCG < 2:2883945/141‑1TATCTCAAACAGGTTAGGCAATAATGCCATAGTAAAATAAGCGCACTAAAATCATTTGAATAGATGATAAAATAAAGCGGATTTTAATCAAATCGATTTTGATACAGATATACAAA‑ATAAAAAGCAAAGGCACATGGCGCG < 1:3712662/141‑1 agcgCAAACCGGTAAGGCAATAAGGCCATAGTAAAATAGGCGCACTAAAATCATTTGAATAGATGATAAAATAAAGCGGATTTTAATCAAATCGATTTTGATACAGATATACAAA‑ATAAAAAGCAAAGGCACATGGCGCGC < 1:588411/137‑1 ATCTCAAACAGGTTAGGCACTAATGCCATAGTAAAATAAGCGCACTAAAATCATTTGAATAGATGATAAAATAAAGCGGATTTTAATCAAATCGATTTTGATACAGATATACAAA‑ATAAAAAGCAAAGGCACATGGCGCGC < 1:2457729/141‑1 ATCTCAAACAGGTTAGGCAATAATGCCATAGTAAAATAAGCGCACTAAAATCATTTGAATAGATGATAAAATAAAGCGGATTTTAATCAAATCGATTTTGATACAGATATACAAA‑CTAAAAAGCAAAGGCACATGGCGCGC < 2:546984/141‑1 ATCTCAAACAGGTTAGGCAATAATGCCATAGTAAAATAAGCGCACTAAAATCATTTGAATAGATGATAAAATAAAGCGGATTTTAATCAAATCGATTTTGATACAGATATACAAA‑ATAAAAAGCAAAGGCACATGGCGCGC < 2:3448860/141‑1 ATCTCAAACAGGTTAGGCAATAATGCCATAGTAAAATAAGCGCACTAAAATCATTTGAATAGATGATAAAATAAAGCGGATTTTAATCAAATCGATTTTGATACAGATATACAAA‑ATAAAAAGCAAAGGCACATGGCGCGC < 1:3572546/141‑1 TCTCAAACAGGTTAGGCAATAATGCCATAGTAAAATAAGCGCACTAAAATCATTTGAATAGATGATAAAATAAAGCGGATTTTAATCAAATCGATTTTGATACAGATATACAAA‑ATAAAAAGCAAAGGCACATGGCGCGCC > 1:106577/1‑141 CTCAAACAGGTTAGGCAATAATGCCATAGTAAAATAATCGCACTAAAATCATTTGAATATATGATAAAATAAAGCAGATTTTAATCAAATCGATTTTGATAAAGATATACAAATATAAAAA‑CAAATAAACATAGCGCGCCT > 2:314083/1‑141 CTCAAACAGGTTAGGCAATAATGCCATAGTAAAATAAGCGCACTAAAATCATTTGAATAGATGATAAAATAAAGCGGATTTTAATCAAATCGATTTTGATACAGATATACAAA‑ATAAAAAGCAAAGGCACATGGCGCGCCT > 2:3528019/1‑141 CTCAAACAGGTTAGGCAATAATGCCATAGTAAAATAAGCGCACTAAAATCATTTGAATAGATGATAAAATAAAGCGGATTTTAATCAAATCGATTTTGATACAGATATACAAA‑ATAAAAAGCAAAGGCACATGGCGCGCCT < 1:91226/141‑1 CTCAAACAGGTTAGGCAATAATGCCATAGTAAAATAAGCGCACTAAAATCATTTGAATAGATGATAAAATAAAGCGGATTTTAATCAAATCGATTTTGATACAGATATACAAA‑ATAAAAAGCAAAGGCACATGGCGCGCCT < 1:3269192/141‑1 cgacCAGGTTAGGCAATAATGCCATAGTAACATACGCGCACTAAAATCATTTGAATAGATGATAAAATAAAGCGGATTTTAATCAAATCGATTTTGATACAGATATACAAA‑ATAAAAAGCAAAGGCACATGGCGCGCCTTT < 1:770541/137‑1 cagACAGGTTAGGCAATAATGCCATAGTAAAATAAGCGCACTGAAATCATTTGAATAGATGATAAAATAAAGCGGATTTTAATCAAAGCGATGTTGAGACAGATATACAAA‑ATAAAAAGCAAAGGCACATGGCGCGCCTTT < 2:1864359/138‑1 CAAACAGTTTAGGCAATAATGCCATAGTAAAATAAGCGCACTAAAATCATTTGAATAGATGATAAAATAAAGCGGATTTTAATCAAATCGATTTTGATACAGATATACAAA‑ATAAAAAGCAAAGGCACATGGCGCGCCTTT < 2:3402731/141‑1 CAAACAGGTTAGGCAATAATGCCATAGTAAAATAAGCGCACTAAAATCATTTGAATAGATGATAAAATAAAGCGGATTTTAATCAAATCGATTTTGATACAGATATACAAA‑ATAAAAAGCAAGGACACATGGCGCGCCTTT > 1:3019681/1‑141 CAAACAGGTTAGGCAATAATGCCATAGTAAAATAAGCGCACTAAAATCATTTGAATAGATGATAAAATAAAGCGGATTTTAATCAAATCGATTTTGATACAGATATACAAA‑ATAAAAAGCAAAGGCACATGGCGCGCCTTT < 1:1868332/141‑1 CAAACAGGTTAGGCAATAATGCCATAGTAAAATAAGCGCACTAAAATCATTTGAATAGATGATAAAATAAAGCGGATTTTAATCAAATCGATTTTGATACAGATATACAAA‑ATAAAAAGCAAAGGCACATGGCGCGCCTTT < 2:2311003/141‑1 CAAACAGGTTAGGCAATAATGCCATAGTAAAATAAGCGCACTAAAATCATTTGAATAGATGATAAAATAAAGCGGATTTTAATCAAATCGATTTTGATACAGATATACAAA‑ATAAAAAGCAAAGGCACATGGCGCGCCTTT < 1:3344112/141‑1 CAAACAGGTTAGGCAATAATGCCATAGTAAAATAAGCGCACTAAAATCATTTGAATAGATGATAAAATAAAGCGGATTTTAATCAAATCGATTTTGATACAGATATACAAA‑ATAAAAAGCAAAGGCACATGGCGCGCCTTT < 1:1980178/141‑1 AAACAGGTTAGGCAATAATGCCATAGTAAAATAAGCGCACTAAAATCATTTGAATAGATGATAAAATAAAGCGGATTTTAATCAAATCGATTTTGATACAGATATACAAA‑ATAAAAAGCAAAGGCACATGGCGCGCCTTTG > 1:1011608/1‑141 AAACAGGTTAGGCAATAATGCCATAGTAAAATAAGCGCACTAAAATCATTTGAATAGATGATAAAATAAAGCGGATTTTAATCAAATCGATTTTGATACAGATATACAAA‑ATAAAAAGCAAAGGCACATGGCGCGCCTTTG < 1:519052/141‑1 AAACAGGTTAGGCAATAATGCCATAGTAAAATAAGCGCACTAAAATCATTTGAATAGATGATAAAATAAAGCGGATTTTAATCAAATCGATTTTGATACAGATATACAAA‑ATAAAAAGCAAAGGCACATGGCGCGCCTTTG > 1:2835529/1‑141 aagAGGTTAGGCAATAATGCCATAGTAAAATAAGCGCACTAAAATCATTTGAATAGATGATAAAATAAAGCGGATTTTAATCAAATCGATTTTGATACAGATATACAAA‑ATAAAAAGCAAAGGCACATGGCGCGCCTTTGC < 1:3402714/138‑1 AACAGGTTAGGCAATAATGCCATAGTAAAATAAGCGCACTAAAATCATTTGAATAGATGATAAAATAAAGCGGATTTTAATCAAATCGATTTTGATACAGATATACAAA‑ATAAAAAGCAAAGGCACATGGCGCGCCTTTGC < 1:3873816/141‑1 AACAGGTTAGGCAATAATGCCATAGTAAAATAAGCGCACTAAAATCATTTGAATAGATGATAAAATAAAGCGGATTTTAATCAAATCGATTTTGATACAGATATACAAA‑ATAAAAAGCAAAGGCACATGGCGCGCCTTTGC > 2:3280992/1‑141 ACAGGTTAGGCAATAATGCCATAGTAAAATAAGCGCACTAAAATCATTTGAATAGATGATAAAATAAAGCGGATTTTAATCAAATCGATTTTGATACAGATATACAAA‑ATAAAAAGCAAAGGCACATGGCGCGCCTTTGCT > 1:2174167/1‑141 ACAGGTTAGGCAATAATGCCATAGTAAAATAAGCGCACTAAAATCATTTGAATAGATGATAAAATAAAGCGGATTTTAATCAAATCGATTTTGATACAGATATACAAA‑ATAAAAAGCAAAGGCACATGGCGCGCCTTTGCT < 2:284775/141‑1 ACAGGTAAGGCAATAATGCAATAGTAAAATAAGCGCACTAAAATCATTTGAATAGATGATAAAATAAAGCGGATTTTAATCAAATCGATTTTGATACAGATATACAAA‑ATAAAAAGCAAAGGCACATGGCGCGCCTTTGCT < 2:3005426/141‑1 caagaaAGGAAATAATGACAAAGTAAAATAAACGCACTAAAAACATATGAATAGATGATAAAATAAAGCGGATTTTAATCAAATCGATTTTGATACAGATATACAAA‑ATAAAAAGCAAAGGCACATGGCGCGCCTTTGCTT < 2:658066/135‑1 CAGGTTAGGCAATAATGCCATAGTAAAATAAGCGCACTAAAATCATTTGAATAGATGATAAAATAAAGCGGATTTTAATCAAATCGATTTTGATACAGATATACAAA‑ATAAAAAGCAAAGGCACATGGCGCGCCTTTGCTT > 1:1605452/1‑141 CAGGTTAGGCAATAATGCCATAGTAAAATAAGCGCACTAAAATCATTTGAATAGATGATAAAATAAAGCGGATTTTAATCAAATCGATTTTGATACAGATATACAAA‑ATAAAAAGCAAAGGCACATGGCGCGCCTTTGCTT > 1:599262/1‑141 CAGGTTAGGCAATAATGCCATAGTAAAATAAGCGCACTAAAATCATTTGAATAGATGATAAAATAAAGCGGATTTTAATCAAATCGATTTTGATACAGATATACAAA‑ATAAAAAGCAAAGGCACATGGCGCGCCTTTGCTT < 1:2609562/141‑1 CAGGTTAGGCAATAATGCCATAGTAAAATAAGCGCACTAAAATCATTTGAATAGATGATAAAATAAAGCGGATTTTAATCAAATCGATTTTGATACAGATATACAAA‑ATAAAAAGCAAAGGCACATGGCGCGCCTTTGCTT > 2:339572/1‑141 CAGGTTAGGCAATAATGCCATAGTAAAATAAGCGCACTAAAATCATTTGAATAGATGATAAAATAAAGCGGATTTTAATCAAATCGATTTTGATACAGATATACAAA‑ATAAAAAGCAAAGGCACATGGCGCGCCTTTGCTT > 1:1799000/1‑141 CAGGTTAGGCAATAATGCCATAGTAAAATAAGCGCACTAAAATCATTTGAATAGATGATAAAATAAAGCGGATTTTAATCAAATCGATTTTGATACAGATATACAAA‑ATAAAAAGCAAAGGCACATGGCGCGCCTTTACTT > 2:3752911/1‑141 CAGGTTAGGCAATAATGCCATAGTAAAATAAGCGCACTAAAATCATTTGAATAGATGATAAAATAAAGCGGATTTTAATCAAATCGATTTTGATACAAATATACAAA‑ATAAAAAACAAAGGCACATGGCGCACCTTTGCTT > 2:1328935/1‑141 CAGGTTAGGCAATAATGCCATAGTAAAATAAGCGCACTAAAATCATTTGAATAGATGATAAAATAAAGCGGATTTTAATCAAATCGATTTTAGCACACAAATACAAA‑ATAAAAAGCAAAGACACATGGCGCGCCTTTACTT > 2:4273617/1‑141 CAGGTTAGGCAATAATGACATATTAAAATAAGCGCACTAAAATCATTTGAATAGATGATAAAATAAAGCGGATTTTAATCAAATCGATTTTGATAAAGATAAACAAA‑ATAAAAAGCAAAAGCACATGGCGCGACTTTacct > 2:2710757/1‑137 AGGTTAGGCAATAATGCCATAGTAAAATAAGCGCACTAAAATCATTTGAATAGATGATAAAATAAAGCGGATTTTAATCAAATCGATTTTGATACAGATATACAAA‑ATAAAAAGCAAAGGCACATGGCGCGCCTTTGCTTT < 1:2313186/141‑1 AGGTTAGGCAATAATGCCATAGTAAAATAAGCGCACTAAAATCATTTGAATAGATGATAAAATAAAGCGGATTTTAATCAAATCGATTTTGATACAGATATACAAA‑ATAAAAAGCAAAGGCACATGGCGCGCCTTTGCTTT < 2:3569323/141‑1 AGGTTAGGCAATAATGCCATAGTAAAATAAGCGCACTAAAATCATTTGAATAGATGATAAAATAAAGCGGATTTTAATCAAATCGATTTTGATACAGATATACAAA‑ATAAAAAGCAAAGGCACATGGCGCGCCTTTGCTTT > 1:4286042/1‑141 AGGTTAGGCAATAATGCCATAGTAAAATAAGCGCACTAAAATCATTTGAATAGATGATAAAATAAAGCGGATTTTAATCAAATCGATTTTGATACAGATATACAAA‑ATAAAAAGCAAAGGCACATGGCGCGCCTTTGCTTT < 2:2478416/141‑1 GGTTAGGCAATAATGCCATAGTAAAATAAGCGCACTGAAATCATTTGAATAGATGATAAAATAAAGCGGATTTTAATCAAATCGATTTTGATACAGATATACAAA‑ATAAAAAGCAAAGACAGATGGCGAGCAATTGCTTTT > 2:3856608/1‑141 GGTTAGGCAATAATGCCATAGTAAAATAAGCGCACTAAAATCATTTGAATAGATGATAAAATAAAGCGGCTTTTAATCAAATCGATTTTGATACAGATATACAAA‑ATAAAAAGCAAAGGCACATGGCGCGCCTTTGCTTTT > 2:2673981/1‑141 GGTTAGGCAATAATGCCATAGTAAAATAAGCGCACTAAAATCATTTGAATAGATGATAAAATAAAGCGGATTTTAATCAAGTCGAATTTGATACAGATATACAAA‑AGAAAAAGCAAAGGCACATGGCGCGCCGTTGCTTTT > 1:873952/1‑141 GGTTAGGCAATAATGCCATAGTAAAATAAGCGCACTAAAATCATTTGAATAGATGATAAAATAAAGCGGATTTTAATCAAATCGATTTTGATACAGATATACAAA‑ATAAAAAGCAAAGGCACATGGCGCGCCTTTGCTTTT > 2:1776984/1‑141 GGTTAGGCAATAATGCCATAGTAAAATAAGCGCACTAAAATCATTTGAATAGATGATAAAATAAAGCGGATTTTAATCAAATCGATTTTGATACAGATATACAAA‑ATAAAAAGCAAAGGCACATGGCGCGCCTTTGCTTTT > 1:2439424/1‑141 GGTTAGGCAATAATGCCATAGTAAAATAAGCGCACTAAAATCATTTGAATAGATGATAAAATAAAGCGGATTTTAATCAAATCGATTTTGATACAGATATACAAA‑ATAAAAAGCAAAGGCACATGGCGCGCCTTTGCTTTT > 2:3941122/1‑141 GGTTAGGCAATAATGCCATAGTAAAATAAGCGCACTAAAATCATTTGAATAGATGATAAAATAAAGCGGATTTTAATCAAATCGATTTTGATACAGATATACAAA‑ATAAAAAGCAAAGGCACATGGCGCGCCTTTGCTTTT > 1:576312/1‑141 GGTTAGGCAATAATGCCATAGTAAAATAAGCGCACTAAAATCATTTGAATAGATGATAAAATAAAGCGGATTTTAATCAAATCGATTTTGATACAGATATACAAA‑ATAAAAAGCAAAGGCACATGACGCGACTTTGCTTTT > 2:2741574/1‑141 GGTTAGGCAATAATGCCATAGTAAAATAAGCGCACTAAAATCATTTGAATAGATGATAAAATAAAGCGGATTTTAATCAAATCGATTTTAATACAGATATACAAA‑ATAAAAAGCAAAGACACATGGCGCGCCTTTGCTTTT > 2:1572473/1‑141 TAGTAAAATAAGCGCACTAAAATCATTTGAATAGATGATAAAATAAAGCGGATTTTAATCAAATCGATTTTGATACAGATATACAAA‑ATAAAAAGCAAAGGCGCGCCATGTGCCTTTGCTTTTTATTTTGTATATCTGTAT < 1:3281617/141‑1 TTGATACAGATATACAAA‑ATAAAAAGCAAAGGCACATGGCGCGCATGTGCTATTTATATTGTATAGCTGTATCAAAATCGATTTGATTAACATCCTCTTTATTTTATCATACATTCATATGATTTAAGTGCGTCTCTTTTA > 2:3700173/1‑141 GCACATGGCGCGCCTTTGCTTTTTATTTTGTATATCTGTATCAAAATCGATTTGATTAAAATCCGCTTTATTTTATCATCTATTCAAATGATTTTAGTGCGCTTATTTTACTATGGCATTATTGCCTAACCTGTTTGAGAT > 1:395034/1‑141 ACATGGCGCGCCTTTGCTTTTTATTTTGTATATCTGTATCAAAATCGATTTGATTAAAATCCGCTTTATTTTATCATCTATTCAAATGATTTTAGTGCGCTTATTTTACTATGGCATTATTGCCTAACCTGTTTGAGATAT > 1:2503774/1‑141 ATGGCGCGCCTTTGCTTTTTATTTTGTATATCTGTATCAAAATCGATTTGATTAAAATCCGCTTTATTTTATCATCTATTCAAATGATTTTAGTGCGCTCATTTTTGTATGGCATTATTGCCTAACCTGTTTGAGATATAT > 1:4156521/1‑141 GCCTTTGCTTTTTGTTTTGTATATCTGTATCAAAATCGATTTGATTAAAATCCGCTTTATTTTATCATCTATTCAAATGATTTTAGTGCGCTTATTTTACTATGGCATTATTGCCTAACCTGTTTGAGATATATTAATATT < 1:3987638/141‑1 GCCTTTGCTTTTTATTTTGTATATCTGTATCAAAATCGATTTGATTAAAATCCGCTTTATTTTATCATCTATTCAAATGATTTTAGTGCGCTTATTTTACTATGGCATTATTGCCTAACCTGTTTGAGATATATTAATATT < 1:2879155/141‑1 GCCTTTGCTTTTTATTTTGTATATCTGTATCAAAATCGATTTGATTAAAATCCGCTTTATTTTATCATCTATTCAAATGATTTTAGTGCGCTTATTTTACTATGGCATTATTGCCTAACCTGTTTGAGATATATTAATATT < 1:2745693/141‑1 GCCTTTGCTTTTTATTTTGTATATCTGTATCAAAATCGATTTGATTAAAATCCGCTTTATTTTATCATCTATTCAAATGATTTTAGTGCGCTTATTTTACTATGGCATTATTGCCTAACCTGTTTGAGATATATTAATATT < 1:488807/141‑1 TTTGCTTTTTATTTTGTATATCTGTATCAAAATCGATTTGATTAAAATCCGCTTTATTTTATCATCTATTCAAATGATTTTAGTGCGCTTATTTTACTATGGCATTATTGCCTAACCTGTTTGAGATATATTAATATTTGA < 2:2457729/141‑1 tttCTTTTTATTTTGTATATCTGTATCAAAATCGATTTGATTAAAATCCGCTTTATTTTATCATCTATTCAAATGATTTTAGTGCGCTTATTTTACTATGGCATTATTGCCTAACCTGTTTGAGATATATTAATATTTGAT < 2:4389447/138‑1 TTGCTTTTTATTTTGTATATCTGTATCAAAATCGATTTGATTAAAATCCGCTTTATTTTATCATCTATTCAAATGATTTTAGTGCGCTTATTTTACTATGGCATTATTGCCTAACCTGTTTGAGATATATTAATATTTGAT < 1:2888621/141‑1 TTGCTTTTTATTTTGTATATCTGTATCAAAATCGATTTGATTAAAATCCGCTTTATTTTATCATCTATTCAAATGATTTTAGTGCGCTTATTTTACTATGGCATTATTGCCTAACCTGTTTGAGATATATTAATATTTGAT < 1:324523/141‑1 TTGCTTTTTATTTTGTATATCTGTATCAAAATCGATTTGATTAAAATCCGCTTTATTTTATCATCTATTCAAATGATTTTAGTGCGCTTATTTTACTATGGCATTATTGCCTAACCTGTTTGAGATATATTAATATTTGAT < 2:2568506/141‑1 TTGCTTTTTATTTCGTATATCTGTATCAAAATCGATTTGATTAAAATCCGCTTTATTTTATCATCTATTCAAATGATTTTAGTGCGCTTATTTTACTATGGCATTATTGCCTAACCTGTTTGAGATATATTAATATTTGAT < 1:2685851/141‑1 TGCTTTTTATTTTGTATATCTGTATCAAAATCGATTTGATTAAAATCCGCTTTATTTTATCATCTATTCAAATGATTTTAGTGCGCTTATTTTACTATGGCATTATTGCCTAACCTGTTTGAGATATATTAATATTTGATG < 1:1397065/141‑1 GCTTTTTTTTTTTTTTATCTGTATCAAAATCGATTTGATTAAAATCCGCTTTATTTTATCATCTATTCAAATGATTTTAGTGCGCTTATTTTACTATGGCATTATTGCTTTTCTTTTTTGAGTTATATTAATATTTTATGA > 2:3305082/1‑141 GCTTTTTATTTTGTATATCTGTATCAAAATCGATTTTATTAAAATTCGCTTTATTTTATCATCTATTCAAATGATTTTAGTGCGCTTATTTTACTATGGCATTATTGCCTAACCTGTTTGAGATATATTAATATTTGATGA < 1:439626/141‑1 GCTTTTTATTTTGTATATCTGTATCAAAATCGAGTTGATTAAAATCCGCTTTATTTTATCATCTATTCAAATGATTTTAGTGCGCTAAATTTACTATGGCATTATTGCCTAACCTGTTTGAGATATCTTAATATataaaga > 2:898772/1‑134 GCTTTTTATTTTGGATATCTGTATCAAAATCGATTTGATTAAAATCCGCTTTATTTTATCATCTATTCAAATGATTTTAGTGCGCTTATTTTACTATGGCATTATTGCCTAACCTGTTTGAGATATATTAATATTTGATGA < 1:683375/141‑1 CTTTTTATTTTGTATATCTGTATCAAAATCGATTTGATTAAAATCCGCTTTATTTTATCATCTATTCAAATGATTTTAGTGCGCTTATTTTACTATGGCATTATTGCCTAACCTGTTTGTGATATATTAATATTTGATGAT > 2:3036527/1‑141 CTTTTTATTTTGTATATCTGTATCAAAATCGATTTGATTAAAATCCGCTTTATTTTATCATCTATTCAAATGATTTTAGTGCGCTTATTTTACTATGGCATTATTGCCTAACCTGTTTGAGATATATTAGTATTTGATGAT > 1:2104199/1‑141 CTTTTTATTTTGTATATCTGTATCAAAATCGATTTGATTAAAATCCGCTTTATTTTATCATCTATTCAAATGATTTTAGTGCGCTTATTTTACTATGGCATTATTGCCTAACCTGTTTGAGATATATTAATATTTGATGAT < 1:1924384/141‑1 CTTTTTATTTTGTATATCTGTATCAAAATCGATTTGATTAAAATCCGCTTTATTTTATCATCTATTCAAATGATTTTAGTGCGCTTATTTTACTATGGCATTATTGCCTAACCTGTTTGAGATATATTAATATTTGATGAT < 2:4102945/141‑1 TTTTTATTTTGTATATCTGTATCAAAATCGATTTGATTTAAATCCGCTTTATTTTATCATCTCTTCAAATGATTTTAGTGCGTTTATTTTATTATTTCATTATTGCTTAACCTGTTTGTTATATATTAATATTTGATGATT > 2:3064238/1‑141 TTTTTATTTTGTATATCTGTATCAAAATCGATTTGATTAAAATCCGCTTTATTTTATCATCTATTCAAATGATTTTAGTGCGCTTATTTTACTATGGCATTATTGCCTAACCTGTTTGAGATATGTGAGTATTTGATGATT > 1:2754912/1‑141 TTTTTATTTTGTATATCTGTATCAAAATCGATTTGATTAAAATCCGCTTTATTTTATCATCTATTCAAATGATTTTAGTGCGCTTATTTTACTATGGCATTATTGCCTAACCTGTTTGAGATATATTAATATTTGATGATT > 1:2049448/1‑141 TTTTATTTTGTATATCTGTATCAAAATCGATTTGATTAAAATCCGCTTTATTTTATCATCTATTCAAATGATTTTAGTGCGCTTATTTTACTATGGCATTATTGCCTAACCTGTTTGAGATATATTAATATTTGATGATTC > 1:273794/1‑141 TTTTATTTTGTATATCTGTATCAAAATCGATTTGATTAAAATCCGCTTTATTTTATCATCTATTCAAATGATTTTAGTGCGCTTATTTTACTATGGCATTATTGCCTAACCTGTTTGAGATATATTAATATTTGATGATTC < 2:3671051/141‑1 TTTTATTTTGTATATCTGTATCAAAATCGATTTGATTAAAATCCGCTTTATTTTATCATCTATTCAAATGATTTTAGTGCGCTTATTTTACTATGGCATTATTGCCTAACCTGTTTGAGATATATTAATATTTGATGATTC < 1:2202112/141‑1 TTTTATTTTGTATATCTGTATCAAAATCGATTTGATTAAAATCCGCTTTATTTTATCATCTATTCAAATGATTTTAGTGCGCTTATTTTACTATGGCATTATTGCCTAACCTGTTTGAGATATATTAATATTTGATGATTC < 1:2440617/141‑1 TTTTATTTTGTATATCTGTATCAAAATCGATTTGATTAAAATCCGCTTTATTTTATCATCTATTCAAATGATTTTAGTGCGCTTATTTTACTATGGCATTATTGCCTAACCTGTTTGAGATATATTAATATTTGATGATTC < 2:112284/141‑1 TTTTATTTTGTATATCTGTATCAAAATCGATTTGATCAAAATCCGCTTTATTTTATCATCTATTCAAATGATTTTAGTGCGCTTATTTTACTATGGCATTATTGCCTAACCTGTTTGAGATATATTAATATTTGATGATTC < 1:3398611/141‑1 TTTATTTTGTATATCTGTATCAAAATCGATTTGATTAAAATCCGCTTTATTTTATCATCTATTCAAATGATTTTAGTGCGCTTATTTTACTATGGCATTATTGCCTAACCTTTTTGAGATATATTAATATTTGATGATTag > 2:4194523/1‑139 TTTATTTTGTATATCTGTATCAAAATCGATTTGATTAAAATCCGCTTTATTTTATCATCTATTCAAATGATTTTAGTGCGCTTATTTTACTATGGCATTATTGCCTAACCTGTTTGCGCTATATTAATATTTGATGATTCG > 1:588949/1‑141 TTTATTTTGTATATCTGTATCAAAATCGATTTGATTAAAATCCGCTTTATTTTATCATCTATTCAAATGATTTTAGTGCGCTTATTTTACTATGGCATTATTGCCTAACCTGTTTGAGATATATTAATATTTGATGATTCG > 1:1537673/1‑141 TTTATTTTGTATATCTGTATCAAAATCGATTTGATTAAAATCCGCTTTATTTTATCATCTATTCAAATGATTTTAGTGCGATTATTTTACTGTGGACTTATTGCCTCACCTGTTTGAGTTCTCTTAATATTTTATGATTCt > 1:128910/1‑140 TTTATTTTGTATATATTTATTAAATTCGATTTGATTAATATTCGCTTTATTTTATCATTTATTCAAATGATTTTATTGTGCTTATTTTACTATGGCATTATTGCCTAACCTGTTTGAGATATATTAATATTTGATGATTCG < 2:3225874/141‑1 TTTATTTTGTATAGATGTATAAAAATCGATATGATTAAAATCCGTTTTATTTTATCATCTATTCAAATGATTTTAGTGCGCTTATTTTACTATGGCATTATTGCCTAACCTGTTTGAGATATATTAATATTTGATGATTCG < 2:2761334/141‑1 TTATTTTGTATATCTGTATCAAAATCGATTTGATTAAAATCCGCTTTATTTTATCATCTATTCAAATGATTTTAGTGCGCTTATTTTACTATGGCATTATTGCCTAACCTGTTTGAGATATATTAATATTTGATGATTTGT > 1:113628/1‑141 TTATTTTGTATATCTGTATCAAAATCGATTTGATTAAAATCCGCTTTATTTTATCATCTATTCAAATGATTTTAGTGCGCTTATTTTACTATGGCATTATTGCCTAACCTGTTTGAGATATATTAATATTTGATGATTCGT < 1:2856908/141‑1 TTATTTTGTATATCTGTATCAAAATCGATTTGATTAAAATCCGCTTTATTTTATCATCTATTCAAATGATTTTAGTGCGCTTATTTTACTATGGCATTATTGCCTAACCTGTTTGAGATATATTAATATTTGATGATTCGT < 2:259077/141‑1 TTATTTTGTATATCTGTAGCAAAATCGATTTGATTAAAATCCGCTTTATTTTATCATCTATTCAAATGATTTTAGTGCGCTTATTTTACTATGTCATTATTGCCTAACCTGTTTGAGATATATTAATATTTGATGATTCGT < 2:4194701/141‑1 TTATTTTGTATATATGTATCAAAATCGATTTGATTAAAATCCGCTTTATTTTATCATCTATTCAAATGATTTTAGTGCGCTTATTTTACTATGGCATTATTGCCTAACCTGTTTGAGATATATTAATATTTGATGATTCGT < 1:1723043/141‑1 TATCTCAAACAGGTTAGGCAATAATGCCATAGTAAAATAAGCGCACTAAAATCATTTGAATAGATGATAAAATAAAGCGGATTTTAATCAAATCGATTTTGATACAGATATACAAA‑ATAAAAAGCAAAGGCACATGGCGCGCCTTTGCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2660721‑2660570‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctttgcttttTATTTTGTATATCTGTATCAAAATCGATTTGATTAAAATCCGCTTTATTTTATCATCTATTCAAATGATTTTAGTGCGCTTATTTTACTATGGCATTATTGCCTAACCTGTTTGAGATATATTAATATTTGATGATTCGT > USA300TCH1516_ALE/2660603‑2660742 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |