| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2762148 = | 367 (1.010) | 5 (0.010) | 3/252 | NT | 1.3% | intergenic (‑52/+11) | sirC/cysJ | Precorrin‑2 dehydrogenase/Sulfite reductase [NADPH] flavoprotein alpha‑component |
| ? | USA300TCH1516_ALE | 2762191 = | 380 (1.080) | coding (1849/1881 nt) | cysJ | Sulfite reductase [NADPH] flavoprotein alpha‑component | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ATGTATGGCGAAAGATGTCCATCAAGCCATTAAAGATGTATTGGTAAAAGAACGTCATATTTCTCAAGAAGAAGCAGAGTTATTATTGCGACAAATGAAACAACAACAACGCTATCAACGTGATGTTTATTAGCGATTGGTGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2762291‑2762148‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgttGTTTCATTTGTCGCAATAATAACTCTGCTTCTTCTTGAGAAATATGACGTTCTTTTACCAATACATCTTTAATGGCTTGATGGACATCTTTCGCCATACATTTTTCATCGCCACAAATATAGATTGCTGCGCCTTGCTCA > USA300TCH1516_ALE/2762191‑2762330 ATGTATGGCGAAAGATGTCCATCAAGCCATTAAAGATGTATTGGTAAAAGAACGTCATATTTCTCAAGAAGAAGCAGAGTTATTATTGCGACAAATGAAACAACAACAACGCTATCAACGTGATGTTTATTAGCGATTGGT < 1:3777325/141‑1 TGTATGTCGAAAGATGTCCATCAAGCCATTAAAGATGTATTGGTAAAAGAACGTCATATTTCTCAAGAAGAAGCAGAGTTATTATTGCGACAAATGAAACAACAACAACGCTATCAACGTGATGTTTATTAGCGATTGGTG < 1:2115674/141‑1 TGTATGGCGAAAGATGTCCATCAAGCCATTAAAGATGTATTGGTAAAAGAACGTCATATTTCTCAAGAAGAAGCAGAGTTATTATTGCGACAAATGAAACAACAACAACGCTATCAACGTGATGTTTATTAGCGATTGGTG > 1:1508846/1‑141 TGTATGGCGAAAGATGTCCATCAAGCCATTAAAGATGTATTGGTAAAAGAACGTCATATTTCTCAAGAAGAAGCAGAGTTATTATTGCGACAAATGAAACAACAACAACGCTATCAACGTGATGTTTATTAGCGATTGGTG < 1:3510198/141‑1 TGTATGGCGAAAGATGTCCATCAAGCCATTAAAGATGTATTGGTAAAAGAACGTCATATTTCTCAAGAAGAAGCAGAGTTATTATTGCGACAAATGAAACAACAACAACGCTATCAACGTGATGTTTATTAGCGATTGGTG > 1:3484118/1‑141 TGTATGGCGAAAGATGTCCATCAAGCCATTAAAGATGTATTGGTAAAAGAACGTCATATTTCTCAAGAAGAAGCAGAGTTATTATTGCGACAAATGAAACAACAACAACGCTATCAACGTGAGGGTGATGAGCGATTGGTG > 1:2754599/1‑141 TGTATGGCGAAAGATGTCCATCAAGCCATTAAAGATGTATTGGTAAAAGAACGTCATATTTCTCAAGAAGAAGCAGAGTTATTATTGCGACAAATGAAACAACAACAACGATATCAACGTGATGTTTATTAGTGATTGGTG > 2:4173172/1‑141 TGTATGGCGAAAGATGTCCATCAAGCCATTAAAGATGTACTGGTAAAAGAACGTCATATTTCTCAAGAAGAAGCAGAGTTATTATTGCGACAAATGAAACAACAACAACGCTATCAACGTGATGTTTATTAGCGGTTGGTG > 1:630280/1‑141 TGTATGGCGAAAGATGTCCATCAAGCCATTAAAGACGTATTCGTAAAAGAACGTCATATTTCTCAAGAAGAAGCAGAGTTATTATTGCGACAAATGAAACAACAACAACGCTATCAACGTGATGTTTATTAGCGATTGGTG < 1:147904/141‑1 ggaaGGCGAAAGATGTCGATCAATCCATGAAAGATGTATTGGTAAAAGAACGTCATATTTCTCAAGAAGAAGCAGAGTTATTATTGCGACAAATGAAACAACAACAACGCTATCAACGTGATGTTTATTAGCGATTGGTGT < 2:4006685/137‑1 GTATGGCGAAAGATGTCCATCAAGCCATTAAAGATGTATTGGTAAAAGAACGTCATATTTCTCAAGAAGAAGCAGAGTTATTATTGCGACAAATGAAACAACAACAACGCTATCAACGTGATGTTTATTAGCGATTGGTGT > 1:1761478/1‑141 GTATGGCGAAAGATGTCCATCAAGCCATTAAAGATGTATTGGTAAAAGAACGTCATATTTCTCAAGAAGAAGCAGAGTTATTATTGCGACAAATGAAACAACAACAACGCTATCAACGTGATGTTTATTAGCGATTGGTGT < 1:2877502/141‑1 GTATGGCGAAAGATGTCCATCAAGCCATTAAAGATATATTGGTAAAATAACGTCATATTTCTCAAGAAGAAGCAGAGTTATTATTGCGACAAATGAAACAACAACAACGCTATCAACGTGATGTTTATTAGCGATTGGTGT < 2:4357897/141‑1 GTAGGGCGAAAGATGTCCATCAAGCCATTAAAGATGTATTGGTAAAAGAACGTAATATTTCTCAAGAAGAAGCAGATTTATTATTGCGAAAAATGAAACAACAACAACGCTATCAACGTGATGTTTATTAGCGATTGGTGT < 1:1233626/141‑1 TATTGGTAAAAGAACGTCATATTTCTCAAGAAGAAGCAGAGTTATTATTGCGACAAATGAAACAACAACAACGCTATCAACGTGATGATTATTAGCGATTGGAGTAGTTGCATTTGTCGCAATGATAACACTGCTTCTACT > 1:3805517/1‑141 TATTGGTAAAAGAACGTCATATTTCTCAAGAAGAAGCAGAGTTATTATTACGACAAATGAAACAACAACAACGCTATCAACGTGATGTTTATTAGCGATTGGTGTTGTTTCATTTGTCGCAATAATAAGTCTGCTTCTTCT > 1:1519482/1‑141 AGAAGAAGCAGAGTTATTATTGCGATAAATGAAACAACGACAACGCTTTCAAGGTGATATTTATTAGCGATTGGTGTTGTTTCATTTGTCGCAATAATAACTCTGCTTCTTCTTGAGAAATATGACGTTCTTTTACCAATA < 2:3805517/141‑1 AGAAGAAGCAGAGTTATTATTGCGACAAATGAAACAACAACAACGCTATCAACGTGATGTTTATTAGCGATTGGTGTTGTTTCATTTGTCGCAATAATAACTCTGCTTCTTCTTGAGAAATATGACGTTCTTTTACCAATA < 2:1519482/141‑1 AACGCTATCAACGTGATGTTTATTAGCGATTGGTGTTGTTTCATTTGTCGCAATAATAACTCTGCTTCTTCTTGAGAAATATGACGTTCTTTTACCAATACATCTTTAATGTCTTGATGCATATCTTTCGCCATACCTTTT > 2:3517750/1‑141 gTGGTGTTGTTGCATTTGTCGCAATAATAACTCTGCTTCTTCTTGAGAAATATGACGTTCTTTTACCAATACATCTTTAATGGCTTGATGGACATCTTTCGCCATACATTTTTCATCGCCACAAATATAGATTGCTGCGCC < 2:1515504/140‑1 TGTTGTTTCATTTGTCGCAATAATAACTCTGCTTCTTCTTGAGAAATATGACGTTCTTTTACCAATACATCTTTAATGGCTTGATGGACATCTTTCTCCATACATTTTTCATCTCCACAAATATAGATTGCTGCGCCTCGC > 2:1408521/1‑141 TGTTGTTTCATTTGTCGCAATAATAACTCTGCTTCTTCTTGAGAAATATGACGTTCTTTTACCAATACATCTTTAATGGCTTGATGGACATCTTTCGCCATACATTTTTCATCGCCACAAATATAGATTGCTGCGCCTTGC > 1:3135109/1‑141 TGTTGTTTCATTTGTCGCAATAATAACTCTGCTTCTTCTTGAGAAATATGACGTTCTTTTACCAATACATCTTTAATGGCTTGATGGACATCTTTCGCCATACATTTTTCATCGCCACAAATATAGATTGCTGCGCCTTGC > 1:1255572/1‑141 TGTTGTTTCATTTGTCGCAATAATAACTCTGCTTCTTCTTGAGAAATATGACGTTCTTTTACCAATACATCTTTAATGGCTTGATGGACATCTTTCGCCATACATTTTTCATCGCCACAAATATAGATTGCTGCGCCTTGC < 1:1082791/141‑1 TTGTTTCATTTGTTGCAATAATAACTCTGCTTCTTCTTGAGAAATATGACGTTCTTTTACCAATACATCTTTAATGGCTTGATGGACATCTTTCGCCATACATTTTTCATCGCCACAAATATAGATTGCTGCGCCTTGCTC < 2:2964930/141‑1 TTGTTTCATTTGTCGCAATAATAACTCTGCTTCTTCTTGAGAAATATGACGTTCTTTTACCAATACATCTTTAATGGCTTGATGGACATCTTTCGCCATACATTTTTCATCGCCACAAATATAGATTGCTGCGCCTTGCTC < 2:1026240/141‑1 TTGTTTCATTTGTCGCAATAATAACTCTGCTTCTTCTTGAGAAATATGACGTTCTTTTACCAATACATCTTTAATGGCTTGATGGACATCTTTCGCCATACATTTTTCATCGCCACAAATATAGATTGCTGCGCCTTGCTC < 1:1951068/141‑1 TTGTTTCATTTGTCGCAATAATAACTCTGCTTCTTCTTGAGAAATATGACGTTCTTTTACCAATACATCTTTAATGGCTTGATGGACATCTTTCGCCATACATTTTTCATCGCCACAAATATAGATTGCTGCGCCTTGCTC < 1:320426/141‑1 TTGTTTCATTTGGCGCAATAATAACTCTGCTTCTTCTTGAGAAATATGACGTTCTTTTACCAATACATCTTTAATGGCTTGATGGACATCTTTCGCCATACATTTTTCATCGCCACAAATATAGATTGCTGCGCCTTGCTC < 2:1209927/141‑1 TTGTTTCATGTGTCGCAATAATAACTCTGCTTCTTCTTGAGAAATATGACGTTCTTTTACCAATACATCTTTAATTGCTGGATGGACATCTTTCGCCATACATTTTTCATCGCCACAAATATAGATTGCTGCGCCTTGCTC < 2:1189301/141‑1 TGTTTCATTTGTCGCAATAATAACTCTGCTTCTTCTTGAGAAATATGACGTTCTTTTACCAATACATCTTTAATGGCTTGATGGACATCTTTCGCCATACATTTTTCATCGCCACAAATATAGATTGCTGCGCCTTGCTCA < 1:2773571/141‑1 TGTTTCATTTGTCGCAATAATAACTCTGCTTCTTCTTGAGAAATATGACGTTCTTTTACCAATACATCTTTAATGGCTTGATGGACATCTTTCGCCATACATTTTTCATCGCCACAAATATAGATTGCTGCGCCTTGCTCA < 1:3882211/141‑1 TGTTTCATTTGTCGCAATAATAACTCTGCTTCTTCTTCAGAAATATGACGTTCTTTTACCAATACATCTTTAATGGCTTGATGGACATCTTTCGCCATACATTTTTCATCGCCACAAATATAGATTGCTGCGCCTTGCTCA < 2:2248156/141‑1 TGTTTCATGTGTCGCAATAATAACTCTGCTTCTTCTTGAGAAATATGACGTTCTTTTACCAATACATCTTTAATGGCTTGATGGACATCTTTCGCCATACATTTTTCATCGCCACAAATATAGATTGCTGCGCCTTGCTCA < 2:683158/141‑1 TGTGTCATTTGTATGAATAATTACTTTGCTTTTTCTTACGAAATATGAAACTCTTTTACCAATACATCTTTAATGGCTTGATGGACATCTTTCTCCATACATTTTTCATCGCCACAAATATAGATTGCTGCGCCTTGCTCA < 2:107176/141‑1 ATGTATGGCGAAAGATGTCCATCAAGCCATTAAAGATGTATTGGTAAAAGAACGTCATATTTCTCAAGAAGAAGCAGAGTTATTATTGCGACAAATGAAACAACAACAACGCTATCAACGTGATGTTTATTAGCGATTGGTGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2762291‑2762148‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgttGTTTCATTTGTCGCAATAATAACTCTGCTTCTTCTTGAGAAATATGACGTTCTTTTACCAATACATCTTTAATGGCTTGATGGACATCTTTCGCCATACATTTTTCATCGCCACAAATATAGATTGCTGCGCCTTGCTCA > USA300TCH1516_ALE/2762191‑2762330 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |